Showing : ATACSeqQC • reset
1
vote
2
replies
9.3k
views
Interpreting TSS Enrichment Score Summary
atacseq atacseqqc tss enrichment
updated 3.7 years ago by ★ 1.3k • written 3.7 years ago by • 0
11
votes
21
replies
5.0k
views
How about our ATAC-Seq data quality analyzed by ATACseqQC
ATACseqQC ATAC-Seq quality analysis fragment size distribution library complexity
updated 5.2 years ago by ★ 4.3k • written 5.2 years ago by ▴ 20
5
votes
9
replies
3.8k
views
mm10 phastCons data for use with ATACseqQC
ATACseqQC bsgenome phastcons rtracklayer
updated 7.0 years ago by ★ 1.3k • written 7.0 years ago by ▴ 10
0
votes
9
replies
3.5k
views
No peak corresponding to the nucleosome-free regions is observed in Fragment size distribution of ATAC-seq
ATACseqQC Fragmentsizedistribution ATAC-seq
3.0 years ago Xiaojie Cheng • 0
1
vote
11
replies
2.3k
views
ATAC-QC shiftGAlignmentsList function
ATAC-seq ATACseqQC
updated 4.8 years ago by ★ 4.3k • written 4.8 years ago by • 0
0
votes
7
replies
2.2k
views
ATACseqQC memory overflow issue
atac-seq software error atacseqqc
updated 6.2 years ago by • 0 • written 6.2 years ago by ▴ 10
0
votes
4
replies
1.9k
views
ATACseqQC R package for QC scores (TSS, FRIP, NFR, IDR)
ATACseqQC atacseq R
updated 3.7 years ago by ★ 1.3k • written 3.7 years ago by • 0
0
votes
6
replies
1.9k
views
atacseqQC error while splittin the bamfile
ATACseqQC ATAC-seq error split bam file
updated 5.0 years ago by • 0 • written 5.0 years ago by ▴ 10
0
votes
7
replies
1.8k
views
ATACseqQC shiftGAlignmentsList leads to (all(elementNROWS)>3) is not TRUE error
ATACseqQC ATAC ATACseq software error Tutorial
updated 4.9 years ago by ★ 13k • written 4.9 years ago by • 0
0
votes
5
replies
1.7k
views
ATACseqQC installation fails at shiny step
ATACseqQC
updated 4.7 years ago by 65k • written 4.7 years ago by • 0
0
votes
1
reply
1.7k
views
Issue installing packages ATACseqQC and GO.db
GO.db biocinstaller package installation atacseqqc
updated 6.1 years ago by ★ 1.3k • written 6.1 years ago by • 0
0
votes
7
replies
1.6k
views
ATACseqQC splitGAlignmentsByCut: strand values must be in '+' '-' '*'
ATACseqQC R
updated 4.8 years ago by ★ 4.3k • written 4.8 years ago by • 0
0
votes
9
replies
1.5k
views
use factorFootprints function in ATACseqQC to get DNA footprinting for certain gene region
ATACseqQC
updated 5.8 years ago by ★ 4.3k • written 5.8 years ago by ▴ 10
2
votes
5
replies
1.5k
views
The meaning of results produced by the bamQC function implemented in the ATACseqQC
ATACseqQC bamQC ATAC-Seq totalQNAMEs MAPQ
updated 5.2 years ago by ★ 4.3k • written 5.2 years ago by ▴ 20
0
votes
5
replies
1.4k
views
ATACSeqQC - error when splitting files using mm10
atacseqqc atac-seq R bioconductor rsamtools
updated 4.0 years ago by ★ 3.9k • written 4.0 years ago by • 0
1
vote
7
replies
1.4k
views
TSSEscore function in ATACseqQC package
ATACseqQC
2.3 years ago Liu Yu-Yu • 0
1
vote
2
replies
1.4k
views
ATACseqQC function bamSplit returns error when input .bam is from mouse
ATACseqQC
4.8 years ago beiting ▴ 30
0
votes
2
replies
1.4k
views
*** caught segfault *** address 0xffffffff9a378e20, cause 'memory not mapped'
ATACseqQC
2.9 years ago Nolan • 0
1
vote
4
replies
1.2k
views
How to use a fimo BED output as GRanges object in factorFootprints from ATACseqQC
ATACseqQC
updated 3.7 years ago by ★ 4.3k • written 3.7 years ago by ▴ 10
0
votes
3
replies
1.1k
views
package for ATACseq data analysis
SequencingData ATACSeq ATACseqQC
updated 20 months ago by ★ 5.2k • written 2.6 years ago by ▴ 30
0
votes
2
replies
1.1k
views
ATACseqQC needs too much memory
ATACseqQC
updated 6.4 years ago by ★ 4.3k • written 6.4 years ago by • 0
0
votes
1
reply
1.0k
views
ATACseqQC: a few questions
ATACseqQC
updated 5.8 years ago by ★ 4.3k • written 5.8 years ago by • 0
0
votes
3
replies
1.0k
views
Compare the DNA footprinting between different samples when using ATACseqQC
atacseqqc
updated 5.8 years ago by ★ 1.3k • written 5.8 years ago by ▴ 10
0
votes
2
replies
989
views
factorFootprints, bindingSites and Profile.segmentation
ATACSeqQC factorFootprints
updated 4.8 years ago by ★ 4.3k • written 4.8 years ago by • 0
0
votes
1
reply
976
views
ATAC-QC fragSizeDist function
ATAC-seq ATACseqQC
updated 4.8 years ago by ★ 4.3k • written 4.8 years ago by • 0
1
vote
4
replies
970
views
Subsampling when adjusting the read start sites in the ATACseqQC guide
atacseqqc r
3.8 years ago Arpi Beshlikyan • 0
0
votes
1
reply
913
views
ATACseqQC questions in R language
atacseqqc
updated 5.9 years ago by ★ 1.3k • written 5.9 years ago by • 0
0
votes
0
replies
778
views
Enough cell number or not based on library complexity evaluation by ATACseqQC?
ATACseqQC ATAC-Seq Library complexity estimateLibComplexity
5.1 years ago Gary ▴ 20
0
votes
7
replies
659
views
ATACseqQC shiftGAlignmentsList() problem
ATACseqQC ATACSeq
updated 9 weeks ago by ▴ 10 • written 5 months ago by • 0
0
votes
0
replies
587
views
[ATACseqQC] NA values in sigs makes heatmap not completed
ATACseqQC ATACSeq
2.1 years ago hyjforesight • 0
0
votes
1
reply
567
views
Error in ATACseqQC bamQC analysis
ATACSeq ATACseqQC
updated 16 months ago by ★ 1.3k • written 16 months ago by • 0
0
votes
0
replies
486
views
NAs in TSSE for certain windows
ATACseqQC
2.7 years ago red_bricks ▴ 50
0
votes
0
replies
459
views
ATACseqQC function fragSizeDist returns error
fragSizeDist ATACseqQC
2.7 years ago xuyao15927402897 • 0
1
vote
1
reply
185
views
Error with BSgenome, wanting to analyse non-model species with ATACseqQC
ATACseqQC
updated 8 weeks ago by 65k • written 8 weeks ago by • 0
0
votes
0
replies
117
views
Issue with shiftGAlignmentsList() in ATACseqQC after updating
R ATACseqQC
9 weeks ago danalvoronov ▴ 10
35 results • Page 1 of 1
Recent ...
Replies
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Hervé Pagès 16k
Indeed. Calculations involving floating point arithmetic are architecture-dependent, and testing the results should be done with `all.equal…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0
I will follow what you suggested. I didn't use max gap anywhere. I was following statistic I and regarding the size of features, my small…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k
Oh I see, for the second question, I don't have a great answer. I typically think of one set as the anchor, whose ascertainment is driving …
Comment: Help with running egsea() by James W. MacDonald 65k
Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…
Comment: Help with running egsea() by Chris • 0
Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…
Votes
Answer: minfi support of illumina Infinium methylationEPIC v2.0
Comment: minfi support of illumina Infinium methylationEPIC v2.0
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Help with running egsea()
Answer: Trim/Filter out-of-bounds GRanges
Awards • All
Scholar to Michael Love 41k
Popular Question to Malcolm Cook ★ 1.6k
Teacher to Gordon Smyth 50k
Popular Question to priyanka.m • 0
Popular Question to Vincent J. Carey, Jr. 6.7k
Locations • All
Belgium, 5 minutes ago
Italy, 12 minutes ago
Singapore, 15 minutes ago
France, 17 minutes ago
The city by the bay, 35 minutes ago
Traffic: 646 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6