Showing : BioCParallel • reset
2
votes
5
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3.6k
views
Issue with BiocParallel
purecn biocparallel
7.3 years ago milos-91 • 0
6
votes
8
replies
2.8k
views
BioParallel::BatchtoolsParam() - how to pass customized resource variables to batchtool's "slurm-simple" template using BatchtoolsParam()?
biocparallel BatchtoolsParam
updated 7.3 years ago by ★ 6.6k • written 7.3 years ago by ▴ 40
4
votes
2
replies
1.4k
views
bpaggregate with formula returns strange error message
biocparallel bpaggregate aggregate
updated 7.6 years ago by 25k • written 7.6 years ago by ▴ 180
5
votes
6
replies
3.6k
views
BiocParallel: database disk image is malformed
biocparallel databases
updated 7.6 years ago by 25k • written 7.6 years ago by ▴ 470
1
vote
1
reply
2.3k
views
Installing package BiocParallel failed
biocparallel
updated 7.6 years ago by 25k • written 7.6 years ago by ★ 1.3k
1
vote
5
replies
1.8k
views
Help using 'handler' function with bptry()
biocparallel error handling
updated 7.7 years ago by 25k • written 7.7 years ago by ▴ 760
12
votes
15
replies
5.1k
views
error with HDF5Array
hdf5array biocparallel
updated 7.7 years ago by ★ 6.6k • written 7.8 years ago by ▴ 30
0
votes
1
reply
1.9k
views
Write gds in parallel
gds SNPRelate BiocParallel
updated 7.8 years ago by ▴ 30 • written 7.8 years ago by ▴ 40
1
vote
6
replies
2.4k
views
Disable messages for bplapply when in parallel
biocparallel bplapply
updated 7.9 years ago by 25k • written 7.9 years ago by ▴ 30
0
votes
3
replies
2.6k
views
BiocParallel NULL value passed as symbol address
BiocParallel Rcpp
updated 7.9 years ago by 25k • written 7.9 years ago by ▴ 30
1
vote
2
replies
1.8k
views
bplapply with ShortRead functions
shortread biocparallel
updated 8.0 years ago by 25k • written 8.0 years ago by ▴ 100
1
vote
1
reply
1.9k
views
Error: BiocParallel errors; first error: invalid 'times' value
MBASED biocparallel
updated 8.0 years ago by 25k • written 8.1 years ago by ▴ 10
1
vote
5
replies
3.3k
views
DiffBind does not run in parallel
diffbind parallel biocparallel
updated 8.0 years ago by ★ 5.3k • written 8.1 years ago by • 0
2
votes
1
reply
1.8k
views
Build error: could not find function "bplapply"
biocparallel build report
updated 8.1 years ago by 25k • written 8.1 years ago by ▴ 180
3
votes
3
replies
2.1k
views
BiocParallel: zombie processes on FORK cluster
biocparallel parallel
updated 8.1 years ago by 25k • written 8.1 years ago by ▴ 280
1
vote
0
replies
2.0k
views
Problems running oligo functions in parallel on a linux computer
biocparallel oligo rma linux parallel
8.1 years ago s.munster ▴ 40
0
votes
4
replies
1.9k
views
DESeq2 Different Results when using different foreach parallel backends
deseq2 biocparallel
8.2 years ago brnleehng • 0
2
votes
2
replies
1.7k
views
bplapply slow to decide number of cores
biocparallel
updated 8.3 years ago by 25k • written 8.3 years ago by ▴ 180
0
votes
0
replies
1.6k
views
Problem with BiocParallel::bpiterate
biocparallel bpiterate readGAlignmentPairs GenomicFiles::reduceByYield
8.3 years ago ioannis.vardaxis ▴ 30
3
votes
2
replies
1.6k
views
Getting data/objects to workers in bplapply inside a function
biocparallel
updated 8.3 years ago by 25k • written 8.3 years ago by ▴ 190
2
votes
4
replies
4.2k
views
defaults in BiocParallel
biocparallel
updated 8.4 years ago by ★ 2.4k • written 11.4 years ago by ★ 6.5k
2
votes
10
replies
2.9k
views
Correct way to load a package inside bplapply function
parallel biocparallel
8.5 years ago felix.ernst • 0
1
vote
2
replies
2.3k
views
BiocParallel and CopywriteR Error
bioconductor biocparallel copywriter
updated 8.6 years ago by 25k • written 8.6 years ago by ▴ 10
3
votes
3
replies
1.6k
views
Parallel reading of Vcfs using VcfStack/RangedVcfStack
GenomicFiles BiocParallel
updated 8.6 years ago by 4.3k • written 8.7 years ago by ▴ 20
4
votes
7
replies
7.0k
views
BiocParallel/scater warning after move to R 3.4.0
biocparallel scater
updated 8.6 years ago by ▴ 40 • written 8.8 years ago by • 0
1
vote
4
replies
2.3k
views
TarSeqQC TargetExperiment() Error- failed to stop SOCKcluster cluster-error writing to connection
TarSeqQC R ngs biocparallel
updated 8.7 years ago by 25k • written 8.7 years ago by ▴ 10
5
votes
5
replies
2.1k
views
BiocParallel: messages shown only when processes finished
biocparallel
updated 8.7 years ago by 25k • written 8.7 years ago by ★ 2.1k
2
votes
3
replies
3.6k
views
BiocParallel::bplapply() performance with MulticoreParam() is worse than mclapply()
biocparallel parallel
8.7 years ago davide risso ▴ 980
0
votes
0
replies
915
views
Parallel version of viewApply?
viewApply biocparallel
8.8 years ago maltethodberg ▴ 180
0
votes
1
reply
1.5k
views
BiocParallel on Windows: how should I pass (not exported) setReplace functions to bplapply?
snowparam biocparallel
updated 9.0 years ago by 25k • written 9.0 years ago by ▴ 20
4
votes
5
replies
6.4k
views
BiocParallel on Windows : cannot find my functions when using SnowParam
BiocParallel SnowParam
updated 9.0 years ago by 25k • written 9.0 years ago by ▴ 60
4
votes
1
reply
1.8k
views
Parallel Join Excessively Slow
biocparallel curatedmetagenomicdata parallel dplyr
updated 9.2 years ago by 25k • written 9.2 years ago by ▴ 240
0
votes
8
replies
2.5k
views
`bplapply` breaks down (BiocParallel_1.6.6, R 3.3.1, openSUSE Leap)
biocparallel bplapply Suse error process
updated 9.2 years ago by • 0 • written 9.2 years ago by • 0
2
votes
9
replies
5.0k
views
Unable to calculate in parallel what can be calculated on a for loop
biocparallel foreach org.hs.eg.db gostats
updated 9.2 years ago by 25k • written 9.3 years ago by ▴ 760
5
votes
2
replies
1.9k
views
seeking idea for proper output representation for multiple GRanges overlapping
r grangeslist biocparallel findoverlaps
9.6 years ago • updated 9.2 years ago Jurat Shahidin ▴ 80
0
votes
1
reply
1.7k
views
BiocParallel and variable scope in child processes
parallel variable scope fork BiocParallel
updated 9.2 years ago by 25k • written 9.2 years ago by • 0
0
votes
1
reply
1.6k
views
Question about sumbition process and biocviews
biocviews biocparallel github package submission
updated 9.3 years ago by 25k • written 9.3 years ago by ▴ 30
0
votes
3
replies
2.4k
views
BiocParallel exporting function?
biocparallel
9.3 years ago ioannis.vardaxis ▴ 30
4
votes
3
replies
3.0k
views
BiocParallel: object export issue
BiocParallel DOSE
updated 9.3 years ago by 25k • written 9.3 years ago by ★ 4.1k
2
votes
7
replies
3.3k
views
DESeq(): Forking of R Process even though parallel=FALSE
DESeq2 biocparallel
updated 9.4 years ago by 43k • written 9.4 years ago by • 0
1
vote
1
reply
2.6k
views
Error in summarizeOverlaps: Error in names(res) <- nms; 'names' attribute [15] must be the same length as the vector [2]
software error summarizeoverlaps biocParallel
9.4 years ago chriad ▴ 10
0
votes
1
reply
1.5k
views
cant download biocparallel
biocparallel
updated 9.5 years ago by 25k • written 9.5 years ago by • 0
3
votes
4
replies
1.7k
views
bplapply stalling upon error with large data objects
biocparallel bplapply multicore
updated 9.5 years ago by 25k • written 9.5 years ago by ★ 29k
4
votes
5
replies
1.8k
views
parRapply in BiocParallel ?
biocparallel variantannotation
updated 9.7 years ago by ★ 11k • written 9.7 years ago by ▴ 350
1
vote
16
replies
3.2k
views
BiocParallel 1.5.20: Another error following example 4.2.1: all "remote" workers on localhost
biocparallel
updated 9.9 years ago by 25k • written 9.9 years ago by ▴ 20
1
vote
4
replies
1.8k
views
BiocParallel 1.4.3: Error following example 4.2.1 - "Error in 0.4 * nx/tasks : non-numeric argument to binary operator"
biocparallel
9.9 years ago lee.tibbert ▴ 20
3
votes
1
reply
1.1k
views
passing submitJobs parameters from BatchJobsParam
biocparallel
updated 10.0 years ago by 25k • written 10.0 years ago by ★ 1.9k
1
vote
2
replies
1.6k
views
Can bplapply timeout when waiting for long jobs?
biocparallel
updated 10.0 years ago by 25k • written 10.0 years ago by • 0
4
votes
4
replies
2.1k
views
Load balancing using BiocParallel
biocparallel
10.0 years ago t.kuilman ▴ 170
1
vote
2
replies
2.2k
views
BiocParallel::bplapply() performance issue
BiocParallel
updated 10.1 years ago by 25k • written 10.2 years ago by ▴ 30
115 results • Page 2 of 3
Recent ...
Replies
Comment: soGGi error by shepherl 4.3k
We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…
Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k
No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.
Comment: Questions about bacon QC and correction on EWAS results by Tikaaa2sahaaaq2c • 0
In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …
Comment: using limma trend workflow in CAMERA by A.Barden ▴ 20
Do you need to set trend.var=TRUE when using camera in the limma-voom pipeline with RNA-Seq data (as apposed to limma-trend pipeline)?
Comment: Upcoming Ensembl API and data access changes - new blog post available by Tikaaa2sahaaaq2c • 0
Just as the Ensembl team transitions to a new platform for streamlined data access, diners can benefit from a digital newks menu prices con…
Votes
Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
C: Why limma, edgeR, and DESeq did not implement fold change moderation first?
Comment: using limma trend workflow in CAMERA
C: z-score with DESeq2?
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