Showing : Bioconductor • reset
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Recovering my account credentials on Bioconductor
Bioconductor
updated 1 day ago by 3.9k • written 1 day ago by • 0
1
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0
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235
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News: Nominations for Bioconductor Awards 2024!
Recognition Awards Bioconductor Bioc204
6 weeks ago • updated 2 days ago shepherl 3.9k
3
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0
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91
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News: Bioconductor 3.19 is Released!
Release Bioconductor Packages Software
7 days ago shepherl 3.9k
0
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0
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73
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News: BioC2024 deadlines approaching
BioC2024 Bioconductor Community
8 days ago Maria Doyle ▴ 70
1
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0
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293
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Tutorial: Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
bioconductor Install
19 days ago BioinfGuru ▴ 30
3
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18
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2.9k
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News: List of Deprecated Packages for Bioc3.18
Deprecation devel Bioconductor Devel
10 months ago • updated 21 days ago shepherl 3.9k
0
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0
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87
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News: Important Release 3.18 Freeze Announcment
Release release Bioconductor Bioconducto
26 days ago shepherl 3.9k
0
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7
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410
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Internet connection for Bioconductor packages in Rstudio in Iran...
No_internet_connection_Packages Proxy Bioconductor GEOquery Internet_connection_problem
5 weeks ago needNGS • 0
0
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2
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181
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bioconductor emailing list
Bioconductor
updated 6 weeks ago by 3.9k • written 6 weeks ago by • 0
0
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0
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145
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News: Deadline Extended - BioC2024 Abstracts and Sticker Contest - April 1st!
BioC2024 Conference Bioconductor
6 weeks ago Maria Doyle ▴ 70
1
vote
2
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263
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supportedOrganisms() in goseq producing Error in names(trackIds)
goseq Bioconductor rtracklayer
8 weeks ago thomas • 0
1
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0
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275
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News: Nominations for Bioconductor Awards 2024!
Recognition Awards Bioconductor Bioc2024
11 weeks ago • updated 9 weeks ago shepherl 3.9k
0
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1
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312
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News: BioC2024 abstract submission is open!
BioC2024 Conference Bioconductor
updated 7 weeks ago by • 0 • written 11 weeks ago by ▴ 70
0
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0
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179
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News: BioC2024 registration is now open!
BioC2024 Conference Bioconductor Community
9 weeks ago Maria Doyle ▴ 70
6
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11
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1.0k
views
Packages don't update, but no error or warning is thrown
Bioconductor
3 months ago • updated 11 weeks ago gernophil • 0
0
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0
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178
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News: EuroBioC2024 abstract submission is open!
Conference Bioconductor EuroBioC2024
12 weeks ago Maria Doyle ▴ 70
2
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0
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244
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News: Upholding our core values: a reminder of the Bioconductor Code of Conduct
Bioconductor
12 weeks ago Maria Doyle ▴ 70
0
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1
reply
238
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Bioconductor: Won't Update to 3.18 with Default Command
Bioconductor
updated 12 weeks ago by ▴ 730 • written 12 weeks ago by ▴ 30
1
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4
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439
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Can't post a question containing code?
Bioconductor
updated 12 weeks ago by ▴ 730 • written 12 weeks ago by ▴ 10
0
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1
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205
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Limitation on single file size and package size when developing Bioc package
packagedevelopment datalimit Bioconductor
updated 3 months ago by 16k • written 3 months ago by • 0
0
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0
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240
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News: Note about packages submitted for Bioconductor 3.19
Release Submission release Bioconductor
3 months ago shepherl 3.9k
2
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1
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282
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News: "Edit" button not working
Bioconductor Website SupportSite
updated 3 months ago by • 0 • written 3 months ago by 3.9k
2
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2
replies
314
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How to contact Bioconductor's test host?
Bioconductor
updated 3 months ago by 16k • written 3 months ago by ▴ 30
0
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4
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757
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Bioconductor installation
Bioconductor
written 4 months ago by • 0
4
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3
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343
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Bioconductor code browser time out
Bioconductor
updated 3 months ago by ★ 6.5k • written 3 months ago by ▴ 30
3
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1
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320
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News: Bioconductor.org has a new look!
Bioconductor Website
written 4 months ago by 3.9k
0
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0
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279
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News: Online course - FLOW CYTOMETRY DATA ANALYSIS WITH R/BIOCONDUCTOR
Bioconductor FlowCytometryData FlowCytometry
4 months ago info ▴ 10
0
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3
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1.6k
views
Error in library(oligo) : package or namespace load failed for ‘oligoClasses’
R oligoClasses Oligoclass Bioconductor Oligo
written 3.2 years ago by • 0
1
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5
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2.2k
views
pd.mogene.2.0st Error Installing in R 3.1.2
oligo microarray r bioconductor
written 9.2 years ago by ▴ 10
5
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1
reply
446
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News: Bioconductor 3.18 is Released!
Packages Bioconductor Release Software
written 6 months ago by 3.9k
0
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0
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246
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Normalising processed Proteomics data in R
Bioconductor Proteomics
5 months ago Joshua • 0
0
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6
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2.1k
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Error when Installing BioConductor Package ('affy')
Bioconductor Install affy
updated 5 months ago by ★ 4.1k • written 17 months ago by • 0
2
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0
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486
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News: Bioconductor's Transition Away from Twitter/X
Bioconductor
5 months ago Maria Doyle ▴ 70
0
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0
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288
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News: CRAN downtime
BiocManager Bioconductor
5 months ago shepherl 3.9k
2
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4
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629
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Import a Bioconductor package that is only used in a vignette/.Rmd script
Bioconductor PackageType BiocStyle
updated 6 months ago by 3.9k • written 6 months ago by • 0
0
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2
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799
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Job: Bioinformatics Laboratory Head in AI or machine learning (WEHI, Australia)
bioconductor artificialintelligence JobPosting machinelearning
written 8 months ago by 50k
0
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3
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562
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Support for installation and usage of TxDb.Hsapiens.UCSC.hg19.knownGene package in R version 4.2.2
Bioconductor BiocPkgTools
6 months ago blessybo • 0
0
votes
1
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342
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Advice needed on package using online databases (fails CHECK when database is down)
Bioconductor
updated 6 months ago by 3.9k • written 6 months ago by ▴ 30
4
votes
10
replies
1.8k
views
Archives prior to 3.15 gone
archive bioconductor
updated 6 months ago by 3.9k • written 19 months ago by ▴ 30
0
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0
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369
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News: COURSE - Developing R/Bioconductor Packages for Genomics
Bioconductor PackageTypeData PackageType
6 months ago info ▴ 10
2
votes
1
reply
858
views
limma::topTable with adjust.method=NULL is not BH corrected (manual is inconsistent with behavior?)
Bioconductor biocon limma
updated 7 months ago by 50k • written 7 months ago by • 0
2
votes
11
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942
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Error MakeOrgPackagefromNCBI
Bioconductor
updated 3 months ago by ★ 3.9k • written 7 months ago by • 0
5
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2
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764
views
ComBat_seq function in sva package does not return a matrix
sva ComBat ComBat-seq Bioconductor ComBat_seq
7 months ago Federico ▴ 10
0
votes
2
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655
views
For R version 4.0.2 and Biconductor version 3.11, clusterProfiler is not working
Bioconductor clusterProfiler
updated 7 months ago by 65k • written 7 months ago by • 0
0
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2
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1.1k
views
Bioconductor version cannot be validated
Bioconductor
updated 6 months ago by • 0 • written 7 months ago by • 0
0
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1
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3.5k
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Bioconductor version cannot be validated
Bioconductor Annotation Ann
updated 7 months ago by 65k • written 7 months ago by • 0
0
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2
replies
949
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MACS2 not installing
Bioconductor
8 months ago alia.sinqua • 0
0
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0
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631
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NAs in tabular output from DNAcopy
Bioconductor DNAcopy
8 months ago NewtoBioconductor • 0
1
vote
4
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771
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running Bioconductor Docker images only works with versions <= 3.15
Bioconductor
8 months ago patrick.turko • 0
0
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1
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396
views
Package "Netboost" is an Unix-only package, how can I install it in R?
Bioconductor netboost
updated 8 months ago by ★ 4.1k • written 8 months ago by • 0
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Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k
> Any suggestions for methylation data segmentation? I think the same segmentation can be used.
Comment: deseq2 results by swbarnes2 ★ 1.3k
Cross-posted https://www.biostars.org/p/9594331/#9594458
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Mike Smith ★ 6.5k
The other answers here are all good and demonstrate the issue with floating point comparisons nicely. I'd like to add that your particular…
Comment: More regions in union when increasing DBA$config$mergeOverlap by Ian D. ▴ 70
Nudging my question. I could do with confirmation before proceeding with my current projects. Thank you.
Comment: Extremely small p-values using Limma for proteomic data by Robert Castelo ★ 3.3k
From the point of view of visualization, I find handy the fact that raw p-values give more resolution than adjusted ones, which allows one …
Votes
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
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