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News: Bioconductor Build System
Builds Bioconductor
written 20 months ago by 4.3k
0
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0
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694
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News: BioC2024 Bioconductor Carpentries RNA-Seq Workshop July 22-23
BioC2024 Conference Bioconductor Community
20 months ago Maria Doyle ▴ 110
0
votes
1
reply
906
views
Problem in execuation of filterAndTrim command in DADA2
Bioconductor dada2
20 months ago • updated 19 months ago abhisek001 • 0
0
votes
6
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1.7k
views
Running ENmix with mouse methylation manifest: readidat error - Error in readmanifest(manifestfile) : length(control.line) == 1 && is.integer(cont…
ENmix Bioconductor
updated 20 months ago by • 0 • written 20 months ago by ▴ 10
3
votes
5
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1.5k
views
Error while installing BiocManager::install("org.Vdahliae.eg.db")
org.vdahlaie.eg.db Bioconductor
20 months ago Patadù ▴ 20
1
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0
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930
views
News: Last Call: Nominations for Bioconductor Awards 2024! Deadline May 15
Recognition Awards Bioconductor Bioc204
22 months ago • updated 20 months ago shepherl 4.3k
0
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1
reply
464
views
Recovering my account credentials on Bioconductor
Bioconductor
updated 21 months ago by 4.3k • written 21 months ago by • 0
4
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0
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1.7k
views
News: Bioconductor 3.19 is Released!
Release Bioconductor Packages Software
21 months ago shepherl 4.3k
0
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0
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598
views
News: BioC2024 deadlines approaching
BioC2024 Bioconductor Community
21 months ago Maria Doyle ▴ 110
1
vote
0
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10.0k
views
Tutorial: Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
bioconductor Install
21 months ago BioinfGuru ▴ 70
3
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18
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5.0k
views
News: List of Deprecated Packages for Bioc3.18
Deprecation devel Bioconductor Devel
2.6 years ago • updated 21 months ago shepherl 4.3k
0
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0
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870
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News: Important Release 3.18 Freeze Announcment
Release release Bioconductor Bioconducto
21 months ago shepherl 4.3k
0
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7
replies
2.5k
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Internet connection for Bioconductor packages in Rstudio in Iran...
No_internet_connection_Packages Proxy Bioconductor GEOquery Internet_connection_problem
22 months ago needNGS • 0
2
votes
4
replies
941
views
bioconductor emailing list
Bioconductor
22 months ago • updated 17 months ago XFWu • 0
0
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1
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1.2k
views
News: Deadline Extended - BioC2024 Abstracts and Sticker Contest - April 1st!
BioC2024 Conference Bioconductor
updated 7 months ago by • 0 • written 22 months ago by ▴ 110
1
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2
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817
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supportedOrganisms() in goseq producing Error in names(trackIds)
goseq Bioconductor rtracklayer
23 months ago thomas • 0
1
vote
0
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723
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News: Nominations for Bioconductor Awards 2024!
Recognition Awards Bioconductor Bioc2024
23 months ago shepherl 4.3k
0
votes
2
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1.1k
views
News: BioC2024 abstract submission is open!
BioC2024 Conference Bioconductor
written 23 months ago by ▴ 110
0
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0
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818
views
News: BioC2024 registration is now open!
BioC2024 Conference Bioconductor Community
23 months ago Maria Doyle ▴ 110
6
votes
12
replies
6.0k
views
Packages don't update, but no error or warning is thrown
Bioconductor
updated 13 months ago by • 0 • written 24 months ago by • 0
2
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0
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645
views
News: Upholding our core values: a reminder of the Bioconductor Code of Conduct
Bioconductor
23 months ago Maria Doyle ▴ 110
0
votes
1
reply
1.3k
views
Bioconductor: Won't Update to 3.18 with Default Command
Bioconductor
updated 23 months ago by ▴ 760 • written 23 months ago by ▴ 30
1
vote
5
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1.4k
views
Can't post a question containing code?
Bioconductor
updated 20 months ago by • 0 • written 23 months ago by ▴ 10
0
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1
reply
727
views
Limitation on single file size and package size when developing Bioc package
packagedevelopment datalimit Bioconductor
updated 24 months ago by 16k • written 24 months ago by • 0
0
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0
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1.3k
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News: Note about packages submitted for Bioconductor 3.19
Release Submission release Bioconductor
2.0 years ago • updated 24 months ago shepherl 4.3k
2
votes
2
replies
775
views
News: "Edit" button not working
Bioconductor Website SupportSite
written 2.0 years ago by 4.3k
2
votes
2
replies
816
views
How to contact Bioconductor's test host?
Bioconductor
updated 2.0 years ago by 16k • written 2.0 years ago by ▴ 30
0
votes
4
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3.0k
views
Bioconductor installation
Bioconductor
written 2.1 years ago by • 0
4
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5
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1.7k
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Bioconductor code browser time out
Bioconductor
updated 7 months ago by ★ 6.6k • written 2.1 years ago by ▴ 30
3
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1
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795
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News: Bioconductor.org has a new look!
Bioconductor Website
written 2.1 years ago by 4.3k
0
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0
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1.2k
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News: Online course - FLOW CYTOMETRY DATA ANALYSIS WITH R/BIOCONDUCTOR
Bioconductor FlowCytometryData FlowCytometry
2.1 years ago info ▴ 10
0
votes
3
replies
2.5k
views
Error in library(oligo) : package or namespace load failed for ‘oligoClasses’
R oligoClasses Oligoclass Bioconductor Oligo
written 4.9 years ago by • 0
1
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5
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2.9k
views
pd.mogene.2.0st Error Installing in R 3.1.2
oligo microarray r bioconductor
written 11.0 years ago by ▴ 10
5
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1
reply
2.0k
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News: Bioconductor 3.18 is Released!
Packages Bioconductor Release Software
written 2.3 years ago by 4.3k
0
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0
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659
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Normalising processed Proteomics data in R
Bioconductor Proteomics
2.2 years ago Joshua • 0
0
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6
replies
3.7k
views
Error when Installing BioConductor Package ('affy')
Bioconductor Install affy
updated 2.2 years ago by ★ 5.0k • written 3.2 years ago by • 0
2
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0
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771
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News: Bioconductor's Transition Away from Twitter/X
Bioconductor
2.2 years ago Maria Doyle ▴ 110
0
votes
0
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741
views
News: CRAN downtime
BiocManager Bioconductor
2.2 years ago shepherl 4.3k
2
votes
4
replies
1.7k
views
Import a Bioconductor package that is only used in a vignette/.Rmd script
Bioconductor PackageType BiocStyle
updated 2.2 years ago by 4.3k • written 2.2 years ago by • 0
0
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2
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1.5k
views
Job: Bioinformatics Laboratory Head in AI or machine learning (WEHI, Australia)
bioconductor artificialintelligence JobPosting machinelearning
written 2.4 years ago by 53k
0
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3
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1.4k
views
Support for installation and usage of TxDb.Hsapiens.UCSC.hg19.knownGene package in R version 4.2.2
Bioconductor BiocPkgTools
2.2 years ago blessybo • 0
0
votes
1
reply
693
views
Advice needed on package using online databases (fails CHECK when database is down)
Bioconductor
updated 2.2 years ago by 4.3k • written 2.2 years ago by ▴ 30
4
votes
10
replies
3.1k
views
Archives prior to 3.15 gone
archive bioconductor
updated 2.3 years ago by 4.3k • written 3.4 years ago by ▴ 30
0
votes
0
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886
views
News: COURSE - Developing R/Bioconductor Packages for Genomics
Bioconductor PackageTypeData PackageType
2.3 years ago info ▴ 10
2
votes
1
reply
1.6k
views
limma::topTable with adjust.method=NULL is not BH corrected (manual is inconsistent with behavior?)
Bioconductor biocon limma
updated 2.3 years ago by 53k • written 2.3 years ago by • 0
2
votes
11
replies
2.2k
views
Error MakeOrgPackagefromNCBI
Bioconductor
updated 24 months ago by ★ 4.1k • written 2.3 years ago by • 0
5
votes
2
replies
3.1k
views
ComBat_seq function in sva package does not return a matrix
sva ComBat ComBat-seq Bioconductor ComBat_seq
2.3 years ago Federico ▴ 10
0
votes
2
replies
2.5k
views
For R version 4.0.2 and Biconductor version 3.11, clusterProfiler is not working
Bioconductor clusterProfiler
updated 2.3 years ago by 68k • written 2.3 years ago by • 0
0
votes
2
replies
3.0k
views
Bioconductor version cannot be validated
Bioconductor
updated 2.2 years ago by • 0 • written 2.4 years ago by • 0
0
votes
2
replies
2.4k
views
MACS2 not installing
Bioconductor
2.4 years ago alia.sinqua • 0
916 results • Page 3 of 19
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Comment: Confirm that OpenStats will not be archived (pryr dependency) by Marina • 0
Thank you!
Comment: AnnotationForge makeOrgPackage rsqlite_send_query error by ansley.r.burtch • 0
Hi! I am sure you are well into your career now and haven't worked on this for a while, but I wanted to let you know this is still helping …
Comment: limpa analysis advice by Gordon Smyth 53k
I prefer for limpa to work on precursor intensities, because my understanding is that precursors are the basic unit of identification and q…
Answer: Confirm that OpenStats will not be archived (pryr dependency) by shepherl 4.3k
As long as OpenStats is building cleanly and all needed stated dependencies are on CRAN or Bioconductor, OpenStats will not be archived. I…
Comment: Lowly expressed genes reported as significant when using lfcThreshold in DESeq by Michael Love 43k
Yes, I find that the LFC shrinkage and its corresponding stat `svalue` if you use lfcShrink with a threshold often returns more reliable ge…
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Comment: limpa analysis advice
C: AnnotationForge makeOrgPackage rsqlite_send_query error
Answer: Limpa Pipeline Order
Answer: Array weights in dpcDE
Answer: Array weights in dpcDE
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