Showing : Bioconductor • reset
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448
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Recovering my account credentials on Bioconductor
Bioconductor
updated 19 months ago by 4.2k • written 19 months ago by • 0
4
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0
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1.6k
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News: Bioconductor 3.19 is Released!
Release Bioconductor Packages Software
19 months ago shepherl 4.2k
0
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0
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570
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News: BioC2024 deadlines approaching
BioC2024 Bioconductor Community
19 months ago Maria Doyle ▴ 110
1
vote
0
replies
8.3k
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Tutorial: Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
bioconductor Install
20 months ago BioinfGuru ▴ 70
3
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18
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4.8k
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News: List of Deprecated Packages for Bioc3.18
Deprecation devel Bioconductor Devel
2.5 years ago • updated 20 months ago shepherl 4.2k
0
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0
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820
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News: Important Release 3.18 Freeze Announcment
Release release Bioconductor Bioconducto
20 months ago shepherl 4.2k
0
votes
7
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2.3k
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Internet connection for Bioconductor packages in Rstudio in Iran...
No_internet_connection_Packages Proxy Bioconductor GEOquery Internet_connection_problem
20 months ago needNGS • 0
2
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4
replies
896
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bioconductor emailing list
Bioconductor
20 months ago • updated 16 months ago XFWu • 0
0
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1
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1.2k
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News: Deadline Extended - BioC2024 Abstracts and Sticker Contest - April 1st!
BioC2024 Conference Bioconductor
updated 6 months ago by • 0 • written 20 months ago by ▴ 110
1
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2
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785
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supportedOrganisms() in goseq producing Error in names(trackIds)
goseq Bioconductor rtracklayer
21 months ago thomas • 0
1
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0
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700
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News: Nominations for Bioconductor Awards 2024!
Recognition Awards Bioconductor Bioc2024
21 months ago shepherl 4.2k
0
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2
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1.1k
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News: BioC2024 abstract submission is open!
BioC2024 Conference Bioconductor
written 22 months ago by ▴ 110
0
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0
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779
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News: BioC2024 registration is now open!
BioC2024 Conference Bioconductor Community
21 months ago Maria Doyle ▴ 110
6
votes
12
replies
5.3k
views
Packages don't update, but no error or warning is thrown
Bioconductor
updated 11 months ago by • 0 • written 22 months ago by • 0
2
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0
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623
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News: Upholding our core values: a reminder of the Bioconductor Code of Conduct
Bioconductor
22 months ago Maria Doyle ▴ 110
0
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1
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1.2k
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Bioconductor: Won't Update to 3.18 with Default Command
Bioconductor
updated 22 months ago by ▴ 760 • written 22 months ago by ▴ 30
1
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5
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1.4k
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Can't post a question containing code?
Bioconductor
updated 19 months ago by • 0 • written 22 months ago by ▴ 10
0
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1
reply
676
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Limitation on single file size and package size when developing Bioc package
packagedevelopment datalimit Bioconductor
updated 22 months ago by 16k • written 22 months ago by • 0
0
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0
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1.3k
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News: Note about packages submitted for Bioconductor 3.19
Release Submission release Bioconductor
22 months ago shepherl 4.2k
2
votes
2
replies
746
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News: "Edit" button not working
Bioconductor Website SupportSite
written 23 months ago by 4.2k
2
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2
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773
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How to contact Bioconductor's test host?
Bioconductor
updated 23 months ago by 16k • written 23 months ago by ▴ 30
0
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4
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2.7k
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Bioconductor installation
Bioconductor
written 23 months ago by • 0
4
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5
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1.6k
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Bioconductor code browser time out
Bioconductor
updated 5 months ago by ★ 6.6k • written 23 months ago by ▴ 30
3
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1
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765
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News: Bioconductor.org has a new look!
Bioconductor Website
written 23 months ago by 4.2k
0
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0
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1.1k
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News: Online course - FLOW CYTOMETRY DATA ANALYSIS WITH R/BIOCONDUCTOR
Bioconductor FlowCytometryData FlowCytometry
24 months ago info ▴ 10
0
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3
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2.4k
views
Error in library(oligo) : package or namespace load failed for ‘oligoClasses’
R oligoClasses Oligoclass Bioconductor Oligo
written 4.8 years ago by • 0
1
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5
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2.8k
views
pd.mogene.2.0st Error Installing in R 3.1.2
oligo microarray r bioconductor
written 10.8 years ago by ▴ 10
5
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1
reply
1.9k
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News: Bioconductor 3.18 is Released!
Packages Bioconductor Release Software
written 2.1 years ago by 4.2k
0
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0
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634
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Normalising processed Proteomics data in R
Bioconductor Proteomics
2.0 years ago Joshua • 0
0
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6
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3.6k
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Error when Installing BioConductor Package ('affy')
Bioconductor Install affy
updated 2.1 years ago by ★ 5.0k • written 3.0 years ago by • 0
2
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0
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748
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News: Bioconductor's Transition Away from Twitter/X
Bioconductor
2.1 years ago Maria Doyle ▴ 110
0
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0
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717
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News: CRAN downtime
BiocManager Bioconductor
2.1 years ago shepherl 4.2k
2
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4
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1.6k
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Import a Bioconductor package that is only used in a vignette/.Rmd script
Bioconductor PackageType BiocStyle
updated 2.1 years ago by 4.2k • written 2.1 years ago by • 0
0
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2
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1.5k
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Job: Bioinformatics Laboratory Head in AI or machine learning (WEHI, Australia)
bioconductor artificialintelligence JobPosting machinelearning
written 2.3 years ago by 53k
0
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3
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1.4k
views
Support for installation and usage of TxDb.Hsapiens.UCSC.hg19.knownGene package in R version 4.2.2
Bioconductor BiocPkgTools
2.1 years ago blessybo • 0
0
votes
1
reply
670
views
Advice needed on package using online databases (fails CHECK when database is down)
Bioconductor
updated 2.1 years ago by 4.2k • written 2.1 years ago by ▴ 30
4
votes
10
replies
2.9k
views
Archives prior to 3.15 gone
archive bioconductor
updated 2.1 years ago by 4.2k • written 3.2 years ago by ▴ 30
0
votes
0
replies
847
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News: COURSE - Developing R/Bioconductor Packages for Genomics
Bioconductor PackageTypeData PackageType
2.1 years ago info ▴ 10
2
votes
1
reply
1.5k
views
limma::topTable with adjust.method=NULL is not BH corrected (manual is inconsistent with behavior?)
Bioconductor biocon limma
updated 2.2 years ago by 53k • written 2.2 years ago by • 0
2
votes
11
replies
2.0k
views
Error MakeOrgPackagefromNCBI
Bioconductor
updated 22 months ago by ★ 4.1k • written 2.2 years ago by • 0
5
votes
2
replies
2.8k
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ComBat_seq function in sva package does not return a matrix
sva ComBat ComBat-seq Bioconductor ComBat_seq
2.2 years ago Federico ▴ 10
0
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2
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2.3k
views
For R version 4.0.2 and Biconductor version 3.11, clusterProfiler is not working
Bioconductor clusterProfiler
updated 2.2 years ago by 68k • written 2.2 years ago by • 0
0
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2
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2.9k
views
Bioconductor version cannot be validated
Bioconductor
updated 2.1 years ago by • 0 • written 2.2 years ago by • 0
0
votes
2
replies
2.3k
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MACS2 not installing
Bioconductor
2.3 years ago alia.sinqua • 0
0
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0
replies
1.0k
views
NAs in tabular output from DNAcopy
Bioconductor DNAcopy
2.3 years ago NewtoBioconductor • 0
1
vote
4
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1.3k
views
running Bioconductor Docker images only works with versions <= 3.15
Bioconductor
2.3 years ago patrick.turko • 0
0
votes
1
reply
861
views
Package "Netboost" is an Unix-only package, how can I install it in R?
Bioconductor netboost
updated 2.3 years ago by ★ 5.0k • written 2.3 years ago by • 0
1
vote
2
replies
1.5k
views
unable to retrieve certain packages from bioconductor 3.15
Bioconductor biocondu
updated 2.3 years ago by 68k • written 2.3 years ago by ▴ 10
1
vote
13
replies
17k
views
unable to access index for repository
Bioconductor ConsensusClusterPlus
updated 2.3 years ago by • 0 • written 3.0 years ago by • 0
0
votes
0
replies
878
views
News: Bioconductor.org website new design - We Need Your Input!
Bioconductor Community Website
2.4 years ago Maria Doyle ▴ 110
910 results • Page 3 of 19
Recent ...
Replies
Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Answer: PTM analysis in LIMPA by Gordon Smyth 53k
For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…
Answer: problem reading bam files into nucleR by James W. MacDonald 68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Awards • All
Popular Question to shepherl 4.2k
Popular Question to James W. MacDonald 68k
Popular Question to Gordon Smyth 53k
Commentator to sina.nassiri ▴ 130
Popular Question to Hervé Pagès 16k
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