Showing : Bioconductor • reset
0
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18
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4.0k
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problem installing ENmix package
ENmix Bioconductor rtracklayer
written 4.8 years ago by • 0
0
votes
2
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4.3k
views
vmatchPattern on DNAstring set
Bioconductor
2.4 years ago Avner • 0
0
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1
reply
1.1k
views
Read methylation data from tar files on GEO (GSE73303)
GeneExpression Bioconductor GEOquery MethylationArrayData
2.4 years ago Arianna • 0
0
votes
1
reply
1.4k
views
bioconductor - rhdf5 is not avbauloable for bioconductor version "3.14"
Bioconductor Install
updated 2.4 years ago by ★ 6.6k • written 2.4 years ago by • 0
3
votes
5
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2.4k
views
why is downloading the .tar.gz file for a given bioconductor package, then installing with R CMD INSTALL so much more effective than BiocManager::ins…
Bioconductor Install library biocmanager
updated 2.4 years ago by 6.7k • written 2.4 years ago by ▴ 20
0
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0
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918
views
News: Reminder: BioC2023 in-person registration closes 19th July!
Bioconductor BioC2023 Conference
2.4 years ago Maria Doyle ▴ 110
0
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0
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1.1k
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News: Course - Network Analysis in Systems Biology with R/Bioconductor
Bioconductor Network RNASeqData SystemsBiology
2.4 years ago info ▴ 10
0
votes
5
replies
1.8k
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What to whitelist in Firewall to allow downloading packages
Bioconductor NetworkInference
updated 2.4 years ago by 4.2k • written 2.4 years ago by • 0
1
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0
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730
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News: Bioconductor Website Redesign - We Need Your Input!
Bioconductor Website
2.5 years ago shepherl 4.2k
0
votes
1
reply
792
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BiocManager Package installs
Bioconductor
updated 2.5 years ago by 4.2k • written 2.5 years ago by • 0
0
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2
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1.6k
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News: List of Deprecated Packages for Bioc3.17
Bioconductor Deprecation Devel devel
2.7 years ago • updated 2.5 years ago shepherl 4.2k
0
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0
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657
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News: May 31st is the last day to nominate for Bioc2023 Awards!
Bioconductor Awards Bioc2023 Recognition
2.5 years ago shepherl 4.2k
0
votes
6
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1.5k
views
Merge 2 accounts, or delete 1 account.
Bioconductor ALL
2.5 years ago simone.tiberi • 0
0
votes
0
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864
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News: Reminder: BioC2023, Awards, TAB Deadline approaching - May 31st!
Bioconductor Community BioC2023
2.6 years ago Maria Doyle ▴ 110
0
votes
4
replies
1.4k
views
problem while retriving the genes by using p value and log2fc as conditions
Bioconductor Transcriptomics DifferentialExpression DESeq2
2.6 years ago sreeshmaraj72 • 0
1
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0
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974
views
News: Last Week to Nominate for Bioc2023 Awards!
Bioconductor Bioc2023 Recognition Awards
2.6 years ago shepherl 4.2k
0
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0
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894
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News: Junior Developer or New Package Developer Award
Bioconductor Recognition Bioc2023 Awards
2.6 years ago shepherl 4.2k
0
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0
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1.0k
views
News: Bioconductor Community Engagement, Outreach, and Diversity Award
Awards Bioconductor Bioc2023 Recognition
2.6 years ago shepherl 4.2k
0
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0
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992
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News: Bioconductor Long-term Contribution Award
Bioc2023 Bioconductor Awards Recognition
2.6 years ago shepherl 4.2k
0
votes
0
replies
878
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News: Nominations for Bioconductor 2023 Awards!
Awards Bioconductor Bioc2023 Recognition
2.7 years ago • updated 2.6 years ago shepherl 4.2k
0
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0
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1.5k
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News: Join the Technical Advisory Board
Bioconductor News Organization
2.6 years ago Maria Doyle ▴ 110
0
votes
1
reply
1.6k
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Potential segfault bug in featureCounts using long read data
Bioconductor Rsubread featureCounts
updated 2.6 years ago by ★ 3.6k • written 2.6 years ago by • 0
0
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0
replies
1.0k
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News: RNA-seq analysis with Bioconductor Carpentries workshop, Boston, Jul 31-Aug 1
Bioconductor Event Community Training
2.6 years ago Maria Doyle ▴ 110
0
votes
0
replies
1.2k
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package ‘riboSeqR’ is not available for this version of R
Bioconductor riboSeqR
2.6 years ago Javier • 0
0
votes
0
replies
977
views
News: Include your Bioconductor tutorial in Smörgåsbord 2023, May 22-26!
Training Bioconductor Event Community Tutorial
2.6 years ago Maria Doyle ▴ 110
0
votes
0
replies
1.2k
views
News: Bioconductor 3.17 is Released!
Packages Release Bioconductor Software
2.6 years ago shepherl 4.2k
1
vote
0
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952
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News: Bioconductor joins GTN Smörgåsbord online training event, May 22-26, 2023!
Training Bioconductor Event Community News
2.6 years ago Maria Doyle ▴ 110
0
votes
2
replies
1.4k
views
GenomicRanges coult not be loaded after R upgrade
DESeq2 Bioconductor GenomicRanges
updated 2.6 years ago by • 0 • written 2.6 years ago by • 0
0
votes
1
reply
5.7k
views
package ‘Bioconductor’ is not available for Bioconductor version '3.16'
Bioconductor Install
updated 2.6 years ago by ★ 5.0k • written 2.6 years ago by • 0
0
votes
0
replies
827
views
How to extract the counts for non-split reads from paired end RNA-seq data?
rsubread featurecounts Bioconductor countsextraction
2.7 years ago barrypraveen • 0
0
votes
0
replies
867
views
News: Bioconductor Release 3.16 Code Freeze
release Release Bioconductor
2.7 years ago shepherl 4.2k
1
vote
3
replies
2.4k
views
how to add an enrichment score to a kegg pathway enrichment analysis?
KEGG clusterProfiler Bioconductor
updated 2.7 years ago by ★ 4.1k • written 2.7 years ago by ▴ 10
0
votes
1
reply
1.5k
views
Specific versions of packages
Bioconductor
updated 2.7 years ago by ★ 6.6k • written 2.7 years ago by ▴ 90
0
votes
1
reply
1.9k
views
News: BioC2023 abstract submission is now open!
presentation BioC2023 Conference community Bioconductor
updated 16 months ago by • 0 • written 2.8 years ago by ▴ 110
0
votes
0
replies
1.1k
views
News: Bioconductor 3.17 Release Schedule
Softwar Release Bioconductor release Software
2.8 years ago • updated 2.7 years ago shepherl 4.2k
3
votes
6
replies
1.8k
views
News: Bioconductor will rename the default branch on `git.bioconductor.org` to `devel`
Software Bioconductor Devel devel
updated 2.7 years ago by • 0 • written 2.8 years ago by 4.2k
2
votes
5
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2.7k
views
edgeR Help: Getting no DGEs with an FDR < 0.05
edgeR RNASeq RNASeqData Bioconductor
written 2.8 years ago by • 0
0
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0
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1.0k
views
News: Course - R/BIOCONDUCTOR FOR MASS SPECTROMETRY AND PROTEOMICS
Proteomics R Bioconductor MassSpectrometry
2.8 years ago info ▴ 10
0
votes
0
replies
841
views
News: Bioconductor call for events!
Bioconductor events community
2.8 years ago Maria Doyle ▴ 110
0
votes
2
replies
4.6k
views
Conducting pair-wise comparison in DESeq2?
DESeq2 deseq2 biocondu Bioconductor RNASeq
written 2.8 years ago by • 0
0
votes
2
replies
1.0k
views
Bioconductor API or dataset
Bioconductor Packages Dataset API
updated 2.8 years ago by 700 • written 2.8 years ago by • 0
2
votes
9
replies
2.2k
views
mas5calls function doesn't work; mirna40cdf problem
R Bioconductor mas5calls
updated 2.9 years ago by 68k • written 2.9 years ago by • 0
0
votes
1
reply
1.0k
views
msPurity::spectralMatching Error in getSmeta(con, pids) : No meta data for spectra available
msPurity Metabolomics Bioconductor xcms spectralMatching
updated 2.9 years ago by • 0 • written 3.2 years ago by ▴ 10
1
vote
1
reply
1.1k
views
News: Join the Community Advisory Board -- upcoming elections -- deadline Today
Bioconductor CAB bioconductoroversight community
written 3.0 years ago by 4.2k
0
votes
0
replies
945
views
News: Seeking members for BioC2023 organizing committee
BioC2023 Bioconductor community
2.9 years ago Maria Doyle ▴ 110
0
votes
0
replies
991
views
News: Seeking Outreachy interns and project proposals
Bioconductor Outreachy community
2.9 years ago Maria Doyle ▴ 110
0
votes
2
replies
6.7k
views
Cannot install packages in R/BiocManager_Warning message: package(s) not installed when version(s) same as or greater than current; use `force = TR…
Bioconductor BioCManager ChIPseeker
updated 3.0 years ago by 68k • written 3.0 years ago by • 0
2
votes
2
replies
1.0k
views
Inccorect group number in DGEList
edgeR Bioconductor Dseq2 dgelist
updated 3.0 years ago by 53k • written 3.0 years ago by • 0
0
votes
1
reply
1.4k
views
DeSeq2 and GenomicRange installation possible conflict with bioconductor version 3.16?
DESeq2 version3.16 installation bioconductor GenomicRange
updated 3.0 years ago by 68k • written 3.0 years ago by • 0
0
votes
2
replies
1.4k
views
abs() error in rstudio
Bioconductor BiocManager abs() Bioinformatics
written 3.0 years ago by • 0
910 results • Page 4 of 19
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Comment: Bioinformatician at the Lausanne University Hospital by eja.ger.m • 0
For individuals looking to improve communication and collaboration in demanding medical or research environments like the Genetic Medicine …
Answer: NUPOP usage by shepherl 4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
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C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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