Showing : Bioconductor • reset
5
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2
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3.1k
views
ComBat_seq function in sva package does not return a matrix
sva ComBat ComBat-seq Bioconductor ComBat_seq
2.4 years ago Federico ▴ 10
0
votes
2
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2.5k
views
For R version 4.0.2 and Biconductor version 3.11, clusterProfiler is not working
Bioconductor clusterProfiler
updated 2.4 years ago by 68k • written 2.4 years ago by • 0
0
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2
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3.0k
views
Bioconductor version cannot be validated
Bioconductor
updated 2.3 years ago by • 0 • written 2.4 years ago by • 0
0
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2
replies
2.5k
views
MACS2 not installing
Bioconductor
2.4 years ago alia.sinqua • 0
0
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0
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1.1k
views
NAs in tabular output from DNAcopy
Bioconductor DNAcopy
2.4 years ago NewtoBioconductor • 0
1
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4
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1.4k
views
running Bioconductor Docker images only works with versions <= 3.15
Bioconductor
2.5 years ago patrick.turko • 0
0
votes
1
reply
892
views
Package "Netboost" is an Unix-only package, how can I install it in R?
Bioconductor netboost
updated 2.5 years ago by ★ 5.0k • written 2.5 years ago by • 0
1
vote
2
replies
1.6k
views
unable to retrieve certain packages from bioconductor 3.15
Bioconductor biocondu
updated 2.5 years ago by 68k • written 2.5 years ago by ▴ 10
1
vote
13
replies
19k
views
unable to access index for repository
Bioconductor ConsensusClusterPlus
updated 2.5 years ago by • 0 • written 3.1 years ago by • 0
0
votes
0
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911
views
News: Bioconductor.org website new design - We Need Your Input!
Bioconductor Community Website
2.5 years ago Maria Doyle ▴ 110
0
votes
18
replies
4.2k
views
problem installing ENmix package
ENmix Bioconductor rtracklayer
written 4.9 years ago by • 0
0
votes
2
replies
4.4k
views
vmatchPattern on DNAstring set
Bioconductor
2.5 years ago Avner • 0
0
votes
1
reply
1.4k
views
Read methylation data from tar files on GEO (GSE73303)
GeneExpression Bioconductor GEOquery MethylationArrayData
2.5 years ago Arianna • 0
0
votes
1
reply
1.5k
views
bioconductor - rhdf5 is not avbauloable for bioconductor version "3.14"
Bioconductor Install
updated 2.6 years ago by ★ 6.6k • written 2.6 years ago by • 0
3
votes
5
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2.6k
views
why is downloading the .tar.gz file for a given bioconductor package, then installing with R CMD INSTALL so much more effective than BiocManager::ins…
Bioconductor Install library biocmanager
updated 2.5 years ago by 6.7k • written 2.6 years ago by ▴ 20
0
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0
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944
views
News: Reminder: BioC2023 in-person registration closes 19th July!
Bioconductor BioC2023 Conference
2.6 years ago Maria Doyle ▴ 110
0
votes
0
replies
1.1k
views
News: Course - Network Analysis in Systems Biology with R/Bioconductor
Bioconductor Network RNASeqData SystemsBiology
2.6 years ago info ▴ 10
0
votes
5
replies
1.9k
views
What to whitelist in Firewall to allow downloading packages
Bioconductor NetworkInference
updated 2.6 years ago by 4.3k • written 2.6 years ago by • 0
1
vote
0
replies
757
views
News: Bioconductor Website Redesign - We Need Your Input!
Bioconductor Website
2.6 years ago shepherl 4.3k
0
votes
1
reply
847
views
BiocManager Package installs
Bioconductor
updated 2.7 years ago by 4.3k • written 2.7 years ago by • 0
0
votes
2
replies
1.6k
views
News: List of Deprecated Packages for Bioc3.17
Bioconductor Deprecation Devel devel
2.8 years ago • updated 2.7 years ago shepherl 4.3k
0
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0
replies
685
views
News: May 31st is the last day to nominate for Bioc2023 Awards!
Bioconductor Awards Bioc2023 Recognition
2.7 years ago shepherl 4.3k
0
votes
6
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1.6k
views
Merge 2 accounts, or delete 1 account.
Bioconductor ALL
2.7 years ago • updated 2.6 years ago simone.tiberi • 0
0
votes
0
replies
888
views
News: Reminder: BioC2023, Awards, TAB Deadline approaching - May 31st!
Bioconductor Community BioC2023
2.7 years ago Maria Doyle ▴ 110
0
votes
4
replies
1.4k
views
problem while retriving the genes by using p value and log2fc as conditions
Bioconductor Transcriptomics DifferentialExpression DESeq2
2.7 years ago sreeshmaraj72 • 0
1
vote
0
replies
1.0k
views
News: Last Week to Nominate for Bioc2023 Awards!
Bioconductor Bioc2023 Recognition Awards
2.7 years ago shepherl 4.3k
0
votes
0
replies
916
views
News: Junior Developer or New Package Developer Award
Bioconductor Recognition Bioc2023 Awards
2.7 years ago shepherl 4.3k
0
votes
0
replies
1.0k
views
News: Bioconductor Community Engagement, Outreach, and Diversity Award
Awards Bioconductor Bioc2023 Recognition
2.8 years ago • updated 2.7 years ago shepherl 4.3k
0
votes
0
replies
1.0k
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News: Bioconductor Long-term Contribution Award
Bioc2023 Bioconductor Awards Recognition
2.8 years ago • updated 2.7 years ago shepherl 4.3k
0
votes
0
replies
908
views
News: Nominations for Bioconductor 2023 Awards!
Awards Bioconductor Bioc2023 Recognition
2.8 years ago • updated 2.7 years ago shepherl 4.3k
0
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0
replies
1.5k
views
News: Join the Technical Advisory Board
Bioconductor News Organization
2.7 years ago Maria Doyle ▴ 110
0
votes
1
reply
1.7k
views
Potential segfault bug in featureCounts using long read data
Bioconductor Rsubread featureCounts
updated 2.7 years ago by ★ 3.6k • written 2.8 years ago by • 0
0
votes
0
replies
1.1k
views
News: RNA-seq analysis with Bioconductor Carpentries workshop, Boston, Jul 31-Aug 1
Bioconductor Event Community Training
2.8 years ago Maria Doyle ▴ 110
0
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0
replies
1.2k
views
package ‘riboSeqR’ is not available for this version of R
Bioconductor riboSeqR
2.8 years ago Javier • 0
0
votes
0
replies
1.0k
views
News: Include your Bioconductor tutorial in Smörgåsbord 2023, May 22-26!
Training Bioconductor Event Community Tutorial
2.8 years ago Maria Doyle ▴ 110
0
votes
0
replies
1.3k
views
News: Bioconductor 3.17 is Released!
Packages Release Bioconductor Software
2.8 years ago shepherl 4.3k
1
vote
0
replies
980
views
News: Bioconductor joins GTN Smörgåsbord online training event, May 22-26, 2023!
Training Bioconductor Event Community News
2.8 years ago Maria Doyle ▴ 110
0
votes
2
replies
1.5k
views
GenomicRanges coult not be loaded after R upgrade
DESeq2 Bioconductor GenomicRanges
updated 2.8 years ago by • 0 • written 2.8 years ago by • 0
0
votes
1
reply
5.8k
views
package ‘Bioconductor’ is not available for Bioconductor version '3.16'
Bioconductor Install
updated 2.8 years ago by ★ 5.0k • written 2.8 years ago by • 0
0
votes
0
replies
879
views
How to extract the counts for non-split reads from paired end RNA-seq data?
rsubread featurecounts Bioconductor countsextraction
2.8 years ago barrypraveen • 0
0
votes
0
replies
911
views
News: Bioconductor Release 3.16 Code Freeze
release Release Bioconductor
2.8 years ago shepherl 4.3k
1
vote
3
replies
2.6k
views
how to add an enrichment score to a kegg pathway enrichment analysis?
KEGG clusterProfiler Bioconductor
updated 2.8 years ago by ★ 4.1k • written 2.8 years ago by ▴ 10
0
votes
1
reply
1.6k
views
Specific versions of packages
Bioconductor
updated 2.9 years ago by ★ 6.6k • written 2.9 years ago by ▴ 90
0
votes
1
reply
1.9k
views
News: BioC2023 abstract submission is now open!
presentation BioC2023 Conference community Bioconductor
updated 17 months ago by • 0 • written 3.0 years ago by ▴ 110
0
votes
0
replies
1.2k
views
News: Bioconductor 3.17 Release Schedule
Softwar Release Bioconductor release Software
2.9 years ago shepherl 4.3k
3
votes
6
replies
1.9k
views
News: Bioconductor will rename the default branch on `git.bioconductor.org` to `devel`
Software Bioconductor Devel devel
updated 2.9 years ago by • 0 • written 2.9 years ago by 4.3k
2
votes
5
replies
2.8k
views
edgeR Help: Getting no DGEs with an FDR < 0.05
edgeR RNASeq RNASeqData Bioconductor
written 2.9 years ago by • 0
0
votes
0
replies
1.1k
views
News: Course - R/BIOCONDUCTOR FOR MASS SPECTROMETRY AND PROTEOMICS
Proteomics R Bioconductor MassSpectrometry
2.9 years ago info ▴ 10
0
votes
0
replies
868
views
News: Bioconductor call for events!
Bioconductor events community
2.9 years ago Maria Doyle ▴ 110
0
votes
2
replies
4.9k
views
Conducting pair-wise comparison in DESeq2?
DESeq2 deseq2 biocondu Bioconductor RNASeq
written 3.0 years ago by • 0
919 results • Page 4 of 19
Recent ...
Replies
Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k
No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.
Comment: Questions about bacon QC and correction on EWAS results by Tikaaa2sahaaaq2c • 0
In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …
Comment: using limma trend workflow in CAMERA by A.Barden ▴ 20
Do you need to set trend.var=TRUE when using camera in the limma-voom pipeline with RNA-Seq data (as apposed to limma-trend pipeline)?
Comment: Upcoming Ensembl API and data access changes - new blog post available by Tikaaa2sahaaaq2c • 0
Just as the Ensembl team transitions to a new platform for streamlined data access, diners can benefit from a digital newks menu prices con…
Comment: Error message that there is no package called Biobase by DamionLedner99 • 0
thanks for sharing!!! https://cran.r-project.org/
Votes
Answer: What happens to genes with low dispersion during dispersion shrinkage in DESeq2
Comment: Are transformed values from rlog /vst log2 normalized counts?
Answer: Are transformed values from rlog /vst log2 normalized counts?
A: DESeq2 normalization vs VST vs rlog
Answer: How to directly decet the outlier samples (libraries) in EdgeR pipeline
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