Showing : Biomart • reset
0
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2.9k
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Error in martCheck(mart, c("ensembl", "ENSEMBL_MART_ENSEMBL")) : No dataset selected, please select a dataset first.
biomart mart ensembl
updated 5.6 years ago by 68k • written 5.6 years ago by • 0
0
votes
2
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788
views
Miss GO accession compare to Gene Ontology website
biomaRt
5.6 years ago antoineclem1207 • 0
0
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3
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1.5k
views
Error in getBM() for Phytozome
biomaRt getBM Phytozome Chlamydomonas
updated 5.6 years ago by ★ 6.6k • written 5.6 years ago by ▴ 10
1
vote
8
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12k
views
BioMart: curl option when using getBM in loop
curl biomart getBM Tutorial
updated 5.6 years ago by 68k • written 5.6 years ago by ▴ 10
0
votes
5
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2.5k
views
biomaRt getBM() returns nothing most of the times
biomaRt getBM
updated 5.6 years ago by ★ 1.4k • written 5.6 years ago by • 0
1
vote
2
replies
924
views
adding gene names with biomaRt hgnc_symbol column <logical> with NA
biomaRt gene annotation
updated 5.6 years ago by 68k • written 5.6 years ago by ▴ 10
1
vote
2
replies
877
views
BiomaRt and phytozome: error in return results
Biomart phytozome
5.7 years ago l.willianpacheco • 0
0
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0
replies
924
views
News: Changes to BioMart in Ensembl release 100 and Ensembl Genomes release 47
biomaRt Ensembl News
5.7 years ago Astrid_Ensembl • 0
4
votes
4
replies
3.0k
views
biomaRt getSequence fails with genomic coordinates
biomart getSequence genomic coordinates ENSEMBL bug report
updated 5.7 years ago by ★ 6.6k • written 5.7 years ago by ▴ 10
3
votes
3
replies
1.4k
views
biomaRt 'cache found' message
biomart suggestion cache message
updated 5.7 years ago by ★ 6.6k • written 5.7 years ago by ▴ 10
0
votes
3
replies
991
views
biomaRt not returning correct lists
biomart annotation
5.7 years ago nkuperwasser • 0
0
votes
2
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1.3k
views
biomart webservice error during makeTxDbFromBiomart in r package GenomicFeatures
biomart txdb makeTxDbFromBiomart GenomicFeatures
updated 5.7 years ago by 68k • written 5.7 years ago by • 0
2
votes
2
replies
1.2k
views
Error in biomaRt::getBM(attributes = c("ensembl_transcript_id", "external_gene_name")
software error biomaRt
updated 5.7 years ago by ★ 6.6k • written 5.7 years ago by • 0
1
vote
1
reply
469
views
BioMart webservice returned an invalid result: biomaRt expected a character string of length 1
biomaRt
5.7 years ago tabbott • 0
0
votes
2
replies
1.2k
views
BioMart webservice returned an invalid result
gviz biomart
5.7 years ago adrian86 • 0
0
votes
0
replies
1.2k
views
News: Ensembl 99 has been released and renaming of species
biomart ensembl e99 mart news News
5.8 years ago Thomas Maurel ▴ 800
0
votes
14
replies
2.8k
views
Error while opening Mart with biomaRt package
software error ensembl biomart
5.9 years ago loicborcard01 • 0
2
votes
2
replies
1.0k
views
biomaRt expected a character string of length 1
biomaRt
updated 5.9 years ago by 68k • written 5.9 years ago by ▴ 20
0
votes
1
reply
1.1k
views
customProDB: function PrepareAnnotationEnsembl() not working (biomart issue?)
customProDB Ensembl connection biomart
6.0 years ago laura.fancello • 0
4
votes
5
replies
3.0k
views
Error in the vignette for biomaRt (when accessing an ensembl archive)
biomaRt vignette
updated 4.6 years ago by ▴ 10 • written 6.0 years ago by ▴ 10
1
vote
2
replies
545
views
BiomaRt Error: "character string of length 1."
biomaRt
updated 6.0 years ago by ★ 1.4k • written 6.0 years ago by ▴ 10
0
votes
6
replies
1.5k
views
Anyone else having trouble with biomaRt (Oct 10, 2019)
ensembl biomaRt
updated 6.0 years ago by ★ 6.6k • written 6.0 years ago by ★ 1.4k
0
votes
7
replies
4.1k
views
BioMart does not find mouse homologs of human genes
biomart homolog ortholog gene conversion ensembl
updated 6.0 years ago by 68k • written 6.0 years ago by ▴ 30
3
votes
1
reply
3.3k
views
biomaRt getBM failing to retrieve entrezgene
biomaRt
updated 6.1 years ago by ★ 6.6k • written 6.1 years ago by • 0
0
votes
0
replies
1.4k
views
News: Ensembl 98 has been released and renaming of species
biomart ensembl e98 mart News
6.1 years ago Thomas Maurel ▴ 800
1
vote
5
replies
3.1k
views
Curl error on ensembl biomaRt access
biomaRt curl
6.1 years ago fca.collin • 0
10
votes
6
replies
4.9k
views
Coding vs Noncoding Genes in Hit List
biomaRt coding vs noncoding high throughput
updated 6.1 years ago by 25k • written 6.1 years ago by ▴ 30
0
votes
2
replies
1.7k
views
How an index is built for each gene set collections using buildCustomIdx() indexing function of EGSEA package?
EGSEA edgeR biomaRt limma RNA-seq
6.2 years ago fgol ▴ 10
2
votes
1
reply
1.4k
views
biomaRt fails to retrieve GO description for some particular gene
biomart go r bioconductor symbol
6.2 years ago foehn ▴ 100
0
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1
reply
1.0k
views
Eliminate redundancy in biomaRt (2.38.0) query
biomaRt Ensembl
updated 6.2 years ago by ★ 6.6k • written 6.2 years ago by • 0
1
vote
2
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1.0k
views
Disagreement between results of two 'getBM' queries
BiomaRt biomart
6.3 years ago matrs ▴ 10
1
vote
4
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1.2k
views
System dependent biomaRt curl ssl error "wrong version number"
biomart
updated 6.3 years ago by ★ 6.6k • written 6.3 years ago by • 0
0
votes
3
replies
2.2k
views
external_gene_id attribute removed from new biomaRt version
biomaRt Ensembl Ensemblplants
6.3 years ago Didi ▴ 10
1
vote
2
replies
846
views
Error in biomaRt query - "biomaRt expected a character string of length 1.
biomart R
updated 6.3 years ago by ▴ 10 • written 6.3 years ago by • 0
1
vote
3
replies
1.4k
views
how to run old scripts using corresponding biomaRt versions from archives
biomaRt Bioconductor
updated 6.3 years ago by ★ 6.6k • written 6.3 years ago by ▴ 10
1
vote
0
replies
1.1k
views
News: Ensembl 97 has been released
biomart ensembl e97 News
6.3 years ago James Allen ▴ 10
10
votes
8
replies
4.6k
views
Best alternative annotation package to BiomaRt
R biomaRt Ensembl rnaseq
6.3 years ago m93 ▴ 10
4
votes
2
replies
1.5k
views
bioMart error - The query to the BioMart webservice returned an invalid result: biomaRt expected a character string of length 1
biomaRt
updated 6.3 years ago by ★ 6.6k • written 6.3 years ago by ▴ 60
7
votes
4
replies
8.3k
views
biomaRt question for GO term search
biomaRt GO term
updated 2.6 years ago by ★ 6.6k • written 6.3 years ago by ▴ 10
0
votes
1
reply
1.4k
views
The query to the BioMart webservice returned an invalid result: biomaRt expected a character string
biomart ensembl R Bioconductor
6.3 years ago lbuo • 0
3
votes
3
replies
955
views
Quiery to biomart returned an invalid result
R biomaRt
updated 6.3 years ago by ★ 6.6k • written 6.3 years ago by ▴ 10
0
votes
4
replies
1.9k
views
Error message: "Request to BioMart web service failed."
BiocManager biomaRt listMarts() ensembl Biomart
updated 6.4 years ago by ★ 6.6k • written 6.4 years ago by • 0
0
votes
3
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1.3k
views
Hello ! does anybody failed to convert id using getBM in biomaRt package?
biomaRt getBM
updated 6.4 years ago by 68k • written 6.4 years ago by ▴ 20
1
vote
2
replies
694
views
BioMart webservice returned an invalid result
software error annotation BioMart
updated 6.4 years ago by ★ 6.6k • written 6.4 years ago by ▴ 20
3
votes
4
replies
1.9k
views
BioMart : Error in getBM, the BioMart webservice returned an invalid result
BioMart getBM webservice
updated 6.4 years ago by ★ 6.6k • written 6.4 years ago by ▴ 20
3
votes
2
replies
1.6k
views
GEO Download - "The query to BioMart webservice returned an invalid result..."
biomart geo software error ensembl
updated 6.4 years ago by ★ 6.6k • written 6.4 years ago by ▴ 10
1
vote
3
replies
1.2k
views
Error in getBM - biomaRt expected a character string of 1
biomaRt
updated 6.4 years ago by ★ 6.6k • written 6.4 years ago by • 0
1
vote
3
replies
2.0k
views
Scan error using biomart getBM with version option and host set
biomart ensembl getbm
6.4 years ago Marc Saric ▴ 70
2
votes
4
replies
8.9k
views
Something wrong with the BioMart server
bioMart
updated 6.4 years ago by ★ 6.6k • written 6.4 years ago by • 0
4
votes
4
replies
4.8k
views
Mouse genes not mapping to Human orthologs
biomaRt
6.4 years ago komal.rathi ▴ 120
1,081 results • Page 5 of 22
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Answer: Using DESeq2 for age prediction by ATpoint ★ 5.0k
The package has no such inbuilt function but you are free to use the vst (or any normalized) counts to train a regression model or classifi…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k
Aaron already answered your question. If you have an HDF5 file, it will be read in as a `TENxMatrix` object, which isn't actually read in -…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0
Very strange. We have the same package versions. I tried adding the mtx.class, type, and delayed arguments, but it's still making the coun…
Comment: DESeq2 for candidate gene analysis by piffelpaff ▴ 20
thank you so much for answering Dr. Love!
Answer: DESeq2 for candidate gene analysis by Michael Love 43k
Your plan 1 is reasonable. Run DESeq2 on the whole dataset to obtain size factors and moderated dispersion estimates and then extract the u…
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Answer: DESeq2 for candidate gene analysis
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