Showing : DESEQ2 • reset
2
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17
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3.4k
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lfcshrink error DESeq2
DESeq2 lfcshrink DESe
updated 2.5 years ago by 43k • written 2.5 years ago by • 0
0
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2
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845
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Deseq2 design
DESeq2 genes Differential expressed
2.5 years ago Syed Zaheer ▴ 10
0
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2
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1.3k
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DESeq: low p-values for genes with zero counts in all but one sample of the compared groups
DESeq2 DifferentialExpression
2.5 years ago António Miguel de Jesus Domingues ▴ 510
1
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3
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2.2k
views
DESeq2 1.40.0 binary install issue on Mac M1 (Bioconductor 3.17)
DESeq2
written 2.5 years ago by ▴ 10
1
vote
3
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1.9k
views
Can i perform DEseq2 from 2 different rse objects download from RECOUNT database
DESeq2 recount GTEx TCGA recount3
updated 2.5 years ago by ★ 5.0k • written 2.5 years ago by ▴ 20
2
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2
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964
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load failed for ‘DESeq2’
DESeq2
updated 2.5 years ago by 4.2k • written 2.5 years ago by ▴ 10
8
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12
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3.8k
views
DESeq2 1.40.0 binary install issue on macOS x86 (Bioconductor 3.17)
DESeq2
updated 2.5 years ago by 43k • written 2.6 years ago by ▴ 90
0
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2
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2.5k
views
model matrix not full rank
DESeq2 RNASeq
updated 2.5 years ago by • 0 • written 2.6 years ago by • 0
0
votes
2
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791
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ANOVA-like testing for bulkRNAseq with three conditions with Wald test
DESeq2
updated 2.6 years ago by ★ 5.0k • written 2.6 years ago by • 0
0
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1
reply
594
views
calculating effect of condition taking into account patient origin and clone_origin
DESeq2
updated 2.6 years ago by 43k • written 2.6 years ago by • 0
1
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2
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804
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Wondering if DESeq2 is appropriate for PhIP-seq data?
DESeq2 PhIP-seq
2.6 years ago • updated 2.5 years ago Samantha • 0
0
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1
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1.0k
views
What is the correct way to split genex_high and genex_low groups for DE analysis?
DESeq2 RNASeq
updated 2.6 years ago by 43k • written 2.6 years ago by • 0
0
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1
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1.5k
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DESeq2 Results and Alpha questions
DESeq2
updated 2.6 years ago by 43k • written 2.6 years ago by • 0
1
vote
2
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891
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Different regions for normalisation
DESeq2 median-of-ratios normalisation
2.6 years ago msrch • 0
0
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2
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1.2k
views
Why my log2fcs are too high?
DESeq2 SingleCell log2FC
2.6 years ago paria.alipour • 0
0
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1
reply
806
views
Performing pair-wise comparisons for smaller p value analyzing time series data using deseq2
DESeq2
updated 2.6 years ago by ★ 5.0k • written 2.6 years ago by • 0
0
votes
1
reply
950
views
DESeq2 design formula
DESeq2
updated 2.6 years ago by ★ 1.4k • written 2.6 years ago by • 0
1
vote
4
replies
2.2k
views
Merging samples from different sequencing runs
DESeq2
2.7 years ago • updated 2.5 years ago Zainab ▴ 20
0
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2
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1.4k
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GenomicRanges coult not be loaded after R upgrade
DESeq2 Bioconductor GenomicRanges
updated 2.5 years ago by • 0 • written 2.6 years ago by • 0
8
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10
replies
17k
views
GSEA preranked analysis downstream of DEseq2
deseq2 gsea rnaseq
updated 6 months ago by ★ 5.0k • written 9.3 years ago by ▴ 20
1
vote
1
reply
718
views
Using R to measure differential gene expression of one gene due to different treatments using RNASeq counts
DESeq2 edgeR RNAseq
updated 2.6 years ago by 53k • written 2.6 years ago by • 0
1
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1
reply
1.0k
views
RNA-seq data collected at differnt time points
DESeq2
updated 2.6 years ago by ★ 5.0k • written 2.6 years ago by • 0
0
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3
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1.5k
views
remving pseudogenes and lncRNA from deseq2 res
filter deseq2
updated 2.6 years ago by 43k • written 2.6 years ago by • 0
1
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2
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1.3k
views
summarizeToGene in tximeta causing vastly different results
DESeq2 deseq txime tximeta
updated 2.6 years ago by 43k • written 2.6 years ago by • 0
0
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1
reply
733
views
Time change in expression vs time change in phenotype
Transcriptomics ExpressionData DESeq2
updated 2.6 years ago by 43k • written 2.6 years ago by • 0
1
vote
3
replies
1.4k
views
fc value in ggmaplot does not correspond to the real lfc value on the plot
DESeq2 ggmaplot
updated 2.6 years ago by ★ 5.0k • written 2.6 years ago by • 0
2
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4
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2.6k
views
How to get TPM / FPKM after batch correction with DESeq2?
DESeq2 BatchEffect tpm fpkm
2.6 years ago vk • 0
2
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2
replies
1.8k
views
Error in checkFullRank(modelMatrix)
DESeq2 BatchEffect DifferentialExpression
updated 2.6 years ago by ★ 5.0k • written 2.6 years ago by ▴ 30
1
vote
1
reply
3.2k
views
FPKM t-test vs DEseq2
DESeq2 statistics rna-seq
updated 2.6 years ago by ★ 5.0k • written 2.6 years ago by ▴ 10
0
votes
1
reply
857
views
Can I use baseMean (from DESeq2) as part of presenting/ interpreting results
DESeq2 diferentialabundance 16srRNA baseMean
updated 2.6 years ago by 43k • written 2.6 years ago by • 0
0
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4
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1.0k
views
Down weighing an outlier in DESeq2 ?
DESeq2
updated 2.6 years ago by ★ 5.0k • written 2.6 years ago by • 0
6
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6
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5.3k
views
DESeq2 for single cell pseudobulk processing
DESeq2
updated 2.5 years ago by 43k • written 2.6 years ago by ▴ 10
0
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1
reply
759
views
Differential express genes in one group across all time points
DESeq2 edgeR BP4RNAseq ensemblVEP
updated 2.6 years ago by 43k • written 2.6 years ago by • 0
4
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5
replies
2.2k
views
Adding cell population estimates as a covariate in DESeq2 differential gene expression analysis
DESeq2 Dese DifferentialRegulation differe
updated 17 months ago by • 0 • written 2.6 years ago by ▴ 10
0
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3
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1.7k
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Differential Expression Analysis between Clusters
DESeq2
updated 2.6 years ago by • 0 • written 2.6 years ago by • 0
5
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5
replies
4.7k
views
How to combine two DESeq2 objects (dds) for analysis
DESeq2
updated 2.6 years ago by 43k • written 2.6 years ago by ▴ 10
1
vote
5
replies
2.9k
views
How many parameters should be included in the model design for deseq2?
DESeq2 variancePartition
2.6 years ago Weiqian ▴ 10
1
vote
2
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1.5k
views
Removing Unwanted Variations
DESeq2 NanoStringNCTools RUVnormalize RUVSeq DifferentialExpression
2.6 years ago AZ ▴ 30
4
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2
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3.8k
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Normalisation of data using DESeq2 with multi-groups
DEseq2
2.6 years ago Changsuk ▴ 10
0
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2
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817
views
DESeq2 design matrix accounting for high heterogeneity of individuals inside a group
DESeq2
2.6 years ago a.wag • 0
1
vote
1
reply
903
views
Can I run deseq2 on two separate experiments at once?
rnaseq deseq2
updated 2.6 years ago by ★ 5.0k • written 2.6 years ago by • 0
4
votes
8
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2.8k
views
DESEQ2 - What is the recommended workflow in terms of pre-filtering and counts normalization?
DESeq2 Transcriptomics
updated 2.6 years ago by ★ 13k • written 2.6 years ago by ▴ 20
0
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3
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1.1k
views
How to import dataset from other software into DESeq2?
DESeq2
updated 2.6 years ago by ★ 1.4k • written 2.6 years ago by • 0
2
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3
replies
3.2k
views
RNA-seq analysis without replicates
DESeq2 RESEQ RNASeqData
updated 2.6 years ago by • 0 • written 2.6 years ago by • 0
0
votes
1
reply
663
views
Can a expressed gene dataset yielded after CPM be used in DESeq2 and EdgeR?
DESeq2 edgeR
updated 2.6 years ago by ★ 4.1k • written 2.6 years ago by • 0
0
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1
reply
499
views
DESeq
DESeq2
updated 2.6 years ago by ★ 5.0k • written 2.6 years ago by • 0
3
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6
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1.6k
views
Mistake in Cook's distance calculation in DESeq2 or am I missing something?
DESeq2
2.6 years ago phil.xie • 0
0
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2
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723
views
Inverted log2foldchange in study?
DESeq2
updated 2.6 years ago by ▴ 90 • written 2.6 years ago by • 0
0
votes
1
reply
694
views
DESeq2 statistical model construction
DESeq2
updated 2.6 years ago by ★ 1.4k • written 2.6 years ago by ▴ 20
0
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0
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590
views
Best practice for comparing a subset of data /
DESeq2
2.6 years ago TzuChiao ▴ 10
4,838 results • Page 13 of 97
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Comment: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
Comment: Error installing Seqinfo
Answer: replace cat with message in glmTreat when lfc = 0
Answer: replace cat with message in glmTreat when lfc = 0
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