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DESEQ2
•
reset
0
votes
2
replies
1.2k
views
Outliers
outliers
Deseq2
4.6 years ago
nolwenn
• 0
0
votes
11
replies
2.8k
views
How to setup sample design in DESeq2
DESeq2
written 4.7 years ago by
dequattro.concetta
▴ 10
1
vote
12
replies
3.1k
views
Data normalization
DESeq2
Normalization
4.6 years ago
nolwenn
• 0
0
votes
1
reply
1.1k
views
Deseq2 error "Error in designAndArgChecker"
DESeq2
updated 4.6 years ago by
Michael Love
43k • written 4.6 years ago by
polaxgr
▴ 10
1
vote
2
replies
717
views
Different genes using same method
DESeq2
4.6 years ago
menuka
• 0
1
vote
3
replies
1.2k
views
Preferential sequencing of longer Genes in Illumina?
DESeq2
sequencing
updated 4.7 years ago by
victorbradford4
• 0 • written 4.7 years ago by
simplyphage
• 0
2
votes
2
replies
1.2k
views
is the P value reliable if the counts are Low across the sample ?
DESeq2
sequencing
4.7 years ago
simplyphage
• 0
2
votes
4
replies
3.5k
views
How to reassign DESeqDataSet design to include newly added column to columnData
DESeq2
updated 4.1 years ago by
Michael Love
43k • written 4.7 years ago by
rnavabjj
• 0
0
votes
1
reply
1.0k
views
DEseq2 for analysis of time points
DESeq2
timepoints
updated 4.7 years ago by
Kevin Blighe
★ 4.0k • written 4.7 years ago by
Gian
▴ 30
2
votes
3
replies
4.6k
views
DESEQ2: Some genes have empty pvalue and padj
DESeq2
updated 4.7 years ago by
ATpoint
★ 5.0k • written 4.7 years ago by
Bine
▴ 50
0
votes
2
replies
2.4k
views
Comparison when Control is in differen batch
DESeq2
DifferentialExpression
updated 4.7 years ago by
Kevin Blighe
★ 4.0k • written 4.7 years ago by
rina
▴ 30
0
votes
2
replies
1.5k
views
Deseq2 cooks filter for 2 replicates x 3 replicates
DESeq2
Nullcook'svalues
2x3
DEGs
4.7 years ago
andreia
▴ 10
1
vote
2
replies
2.0k
views
Biological Replicate factor in Design Formula (DESeq2)
DESeq2
4.7 years ago
DcL-A
• 0
0
votes
1
reply
984
views
Wald or LR Test
DESeq2
DifferentialExpression
updated 4.7 years ago by
Michael Love
43k • written 4.7 years ago by
Matt
• 0
0
votes
3
replies
1.5k
views
DESeq2 - extracting results - Gnomon gene model
DESeq2
Gnomon
Biostrings
4.7 years ago • updated 4.6 years ago
sieminsk
• 0
4
votes
18
replies
9.1k
views
DESeq2 - multifactorial design
LRT
DESeq2
interaction
updated 4.7 years ago by
Kevin Blighe
★ 4.0k • written 4.7 years ago by
annamariabugaj
▴ 10
0
votes
4
replies
1.5k
views
How sensitive is DiffBind to Deseq2 assumptions ?
DESeq2
DiffBind
updated 4.6 years ago by
Rory Stark
★ 5.2k • written 4.7 years ago by
Sam
▴ 10
0
votes
1
reply
1.0k
views
DESEQ2 normalization for time series data
DESeq2
Normalization
Medianofratios
updated 4.7 years ago by
Michael Love
43k • written 4.7 years ago by
Joshua
• 0
0
votes
2
replies
1.3k
views
Using a numeric contrast vector to find genes differentially expressed by non-additive effect of a condition
DESeq2
written 4.7 years ago by
TJ
• 0
2
votes
4
replies
1.4k
views
DESEQ2 Formula with 5 variables
DESeq2
4.7 years ago
Bine
▴ 50
3
votes
3
replies
1.4k
views
DESEQ object filter
DESeq2
written 4.7 years ago by
Bine
▴ 50
1
vote
1
reply
3.1k
views
DESeq2 Installation fails with non-zero exit status
DESeq2
updated 4.7 years ago by
Michael Love
43k • written 4.7 years ago by
wlorenz
• 0
2
votes
2
replies
1.4k
views
TxImport when quant.sf files have different index files
tximport
DESeq2
4.7 years ago
mprnl
• 0
0
votes
4
replies
15k
views
Problem install: Package ‘DESeq2’ is not available for this version of R
DESeq2
updated 4.7 years ago by
ATpoint
★ 5.0k • written 4.7 years ago by
reneclassens92
• 0
0
votes
4
replies
1.2k
views
replaceOutliers in DESeq2 : need to recompute size Factors ?
DESeq2
4.7 years ago
eleonoregravier
▴ 70
3
votes
2
replies
1.1k
views
DeSeq2 design for sgRNA fold-change
DESeq2
updated 4.7 years ago by
Michael Love
43k • written 4.7 years ago by
XTR5
▴ 10
2
votes
3
replies
5.3k
views
Failing to install DESeq because the version is not compatible
DESeq2
updated 4.7 years ago by
shepherl
4.2k • written 4.7 years ago by
Evy_00
• 0
0
votes
1
reply
1.1k
views
Non-significant but high LFC after apeglm shrinkage
DESeq2
apeglm
updated 4.7 years ago by
Michael Love
43k • written 4.7 years ago by
hpapoli
• 0
2
votes
5
replies
5.1k
views
DEGpatterns and functional analysis of clusters
DESeq2
RNASeq
DEGreport
updated 3.0 years ago by
Michael Love
43k • written 4.7 years ago by
Giulia
▴ 10
3
votes
5
replies
2.4k
views
Cook's distance outlier detection
DESeq2
cook'sdistance
4.7 years ago
hpapoli
• 0
3
votes
1
reply
2.6k
views
DESeq2 fold change filtering
DESeq2
updated 4.7 years ago by
Michael Love
43k • written 4.7 years ago by
zao.liun95
▴ 10
1
vote
4
replies
1.1k
views
DESeq2 - How can we correct for a "Group-specific condition effect" if the condition can be applied to one group only?
DESeq2
4.7 years ago
Tamer
▴ 10
5
votes
4
replies
3.3k
views
Using DESeq2 with GlmGamPoi
DESeq2
glmGamPoi
scRNAseq
4.7 years ago
tatyana.perlova
• 0
0
votes
1
reply
1.2k
views
Metatranscriptomics DESeq2 multifactorial sampling
Transcriptomics
DESeq2
updated 4.7 years ago by
Michael Love
43k • written 4.7 years ago by
seppe.demits
• 0
0
votes
2
replies
2.1k
views
Finding the correct version of DESeq2 for my version of R (3.6.1)
error
DESeq2
Install
updated 4.7 years ago by
James W. MacDonald
68k • written 4.7 years ago by
Mick
• 0
7
votes
4
replies
17k
views
How to use combat in order to remove batch effects?
BatchEffect
DESeq2
RNASeqData
updated 3.9 years ago by
BioNovice247
• 0 • written 4.7 years ago by
Emma
▴ 20
0
votes
1
reply
986
views
How to analyze ribosome profiling data in the form of a 2x2x2 experiment using DESeq2
DESeq2
RiboSeq
RNASeq
updated 4.7 years ago by
Michael Love
43k • written 4.7 years ago by
kyusikkim
• 0
1
vote
3
replies
1.2k
views
Questions regarding DESeq2 experimental setup and lfcShrink
DESeq2
RNA-seq
updated 4.7 years ago by
Michael Love
43k • written 4.7 years ago by
zroger499
• 0
1
vote
7
replies
2.5k
views
DESeq2: Too many "NA" for adjPvalue
DESeq2
4.7 years ago • updated 3.6 years ago
sagharib
• 0
0
votes
1
reply
1.1k
views
is docker image using DESeq portable?
bioconductor/bioconductor_docker
DESeq2
updated 4.7 years ago by
nitesh.turaga
▴ 140 • written 4.7 years ago by
aedavids
▴ 20
9
votes
6
replies
40k
views
DESeq2 / PCA Analysis of RNA-seq Data - Best Explanatory Resource?
DESeq2
pcaExplorer
updated 4.7 years ago by
Michael Love
43k • written 4.7 years ago by
vanbelj
▴ 30
2
votes
2
replies
1.3k
views
Negative svalues from DESeq2 lfcShrink with ashr
ashr
DESeq2
lfcShrink
svalue
4.7 years ago
Enrico
• 0
0
votes
1
reply
899
views
DESeq2 calling DEGs despite detection in few replicates
DESeq2
updated 4.7 years ago by
swbarnes2
★ 1.4k • written 4.7 years ago by
lnblock2
• 0
0
votes
2
replies
1.3k
views
DESeq2 design formula and batch correction
DESeq2
updated 4.7 years ago by
Michael Love
43k • written 4.7 years ago by
lransom
• 0
0
votes
3
replies
3.9k
views
Understanding MA plot distortion
DESeq2
MAplot
deseq
updated 4.7 years ago by
Michael Love
43k • written 4.7 years ago by
sp
• 0
1
vote
4
replies
2.2k
views
An attempt to better understand DESeq2 dispersion estimation
DESeq2
4.7 years ago
Sam
▴ 10
0
votes
1
reply
3.5k
views
Biological replicates in DESeq2
DESeq2
Bioconductor
RNASeqR
updated 4.7 years ago by
ATpoint
★ 5.0k • written 4.7 years ago by
Blanca
• 0
1
vote
3
replies
2.1k
views
Batch correction and DESeq2
DESeq2
4.7 years ago
Alessia
• 0
2
votes
1
reply
724
views
Splitting multiple groups - three different ages
DESeq2
updated 4.7 years ago by
Michael Love
43k • written 4.7 years ago by
jd348
• 0
0
votes
1
reply
3.4k
views
DESeq2, tximport normalization, normalization factors, size factors
tximport
DESeq2
normalizationfactors
sizefactors
updated 4.7 years ago by
Michael Love
43k • written 4.7 years ago by
svenbioinf
• 0
4,839 results • Page
31 of 97
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To address your query on generating a codon frequency matrix analogous to the output from `consensusMatrix` for a `DNAStringSet` object, no…
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Bioconductor Seminar Series - Dec 2: Deep-learning Gene Perturbation Effect Prediction
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