Showing : DESEq2 • reset
0
votes
1
reply
1.2k
views
DEseq2 to test half-life for time-series data
half-life DESeq2 time-series
updated 4.6 years ago by 43k • written 4.6 years ago by ▴ 10
0
votes
2
replies
1.2k
views
Outliers
outliers Deseq2
4.6 years ago nolwenn • 0
0
votes
11
replies
2.9k
views
How to setup sample design in DESeq2
DESeq2
written 4.8 years ago by ▴ 10
1
vote
12
replies
3.2k
views
Data normalization
DESeq2 Normalization
4.6 years ago nolwenn • 0
0
votes
1
reply
1.1k
views
Deseq2 error "Error in designAndArgChecker"
DESeq2
updated 4.6 years ago by 43k • written 4.6 years ago by ▴ 10
1
vote
2
replies
721
views
Different genes using same method
DESeq2
4.7 years ago menuka • 0
1
vote
3
replies
1.2k
views
Preferential sequencing of longer Genes in Illumina?
DESeq2 sequencing
updated 4.7 years ago by • 0 • written 4.7 years ago by • 0
2
votes
2
replies
1.2k
views
is the P value reliable if the counts are Low across the sample ?
DESeq2 sequencing
4.7 years ago simplyphage • 0
2
votes
4
replies
3.5k
views
How to reassign DESeqDataSet design to include newly added column to columnData
DESeq2
updated 4.1 years ago by 43k • written 4.7 years ago by • 0
0
votes
1
reply
1.0k
views
DEseq2 for analysis of time points
DESeq2 timepoints
updated 4.7 years ago by ★ 4.0k • written 4.7 years ago by ▴ 30
2
votes
3
replies
4.6k
views
DESEQ2: Some genes have empty pvalue and padj
DESeq2
updated 4.7 years ago by ★ 5.0k • written 4.7 years ago by ▴ 50
0
votes
2
replies
2.4k
views
Comparison when Control is in differen batch
DESeq2 DifferentialExpression
updated 4.7 years ago by ★ 4.0k • written 4.7 years ago by ▴ 30
0
votes
2
replies
1.5k
views
Deseq2 cooks filter for 2 replicates x 3 replicates
DESeq2 Nullcook'svalues 2x3 DEGs
4.7 years ago andreia ▴ 10
1
vote
2
replies
2.0k
views
Biological Replicate factor in Design Formula (DESeq2)
DESeq2
4.7 years ago DcL-A • 0
0
votes
1
reply
993
views
Wald or LR Test
DESeq2 DifferentialExpression
updated 4.7 years ago by 43k • written 4.7 years ago by • 0
0
votes
3
replies
1.5k
views
DESeq2 - extracting results - Gnomon gene model
DESeq2 Gnomon Biostrings
4.7 years ago sieminsk • 0
4
votes
18
replies
9.1k
views
DESeq2 - multifactorial design
LRT DESeq2 interaction
updated 4.7 years ago by ★ 4.0k • written 4.7 years ago by ▴ 10
0
votes
4
replies
1.5k
views
How sensitive is DiffBind to Deseq2 assumptions ?
DESeq2 DiffBind
updated 4.6 years ago by ★ 5.2k • written 4.7 years ago by ▴ 10
0
votes
1
reply
1.0k
views
DESEQ2 normalization for time series data
DESeq2 Normalization Medianofratios
updated 4.7 years ago by 43k • written 4.7 years ago by • 0
0
votes
2
replies
1.3k
views
Using a numeric contrast vector to find genes differentially expressed by non-additive effect of a condition
DESeq2
written 4.7 years ago by • 0
2
votes
4
replies
1.4k
views
DESEQ2 Formula with 5 variables
DESeq2
4.7 years ago Bine ▴ 50
3
votes
3
replies
1.4k
views
DESEQ object filter
DESeq2
written 4.7 years ago by ▴ 50
1
vote
1
reply
3.2k
views
DESeq2 Installation fails with non-zero exit status
DESeq2
updated 4.7 years ago by 43k • written 4.7 years ago by • 0
2
votes
2
replies
1.4k
views
TxImport when quant.sf files have different index files
tximport DESeq2
4.7 years ago mprnl • 0
0
votes
4
replies
16k
views
Problem install: Package ‘DESeq2’ is not available for this version of R
DESeq2
updated 4.7 years ago by ★ 5.0k • written 4.7 years ago by • 0
0
votes
4
replies
1.2k
views
replaceOutliers in DESeq2 : need to recompute size Factors ?
DESeq2
4.7 years ago eleonoregravier ▴ 70
3
votes
2
replies
1.1k
views
DeSeq2 design for sgRNA fold-change
DESeq2
updated 4.7 years ago by 43k • written 4.7 years ago by ▴ 10
2
votes
3
replies
5.3k
views
Failing to install DESeq because the version is not compatible
DESeq2
updated 4.7 years ago by 4.2k • written 4.7 years ago by • 0
0
votes
1
reply
1.1k
views
Non-significant but high LFC after apeglm shrinkage
DESeq2 apeglm
updated 4.7 years ago by 43k • written 4.7 years ago by • 0
2
votes
5
replies
5.1k
views
DEGpatterns and functional analysis of clusters
DESeq2 RNASeq DEGreport
updated 3.1 years ago by 43k • written 4.7 years ago by ▴ 10
3
votes
5
replies
2.4k
views
Cook's distance outlier detection
DESeq2 cook'sdistance
4.7 years ago hpapoli • 0
3
votes
1
reply
2.6k
views
DESeq2 fold change filtering
DESeq2
updated 4.7 years ago by 43k • written 4.7 years ago by ▴ 10
1
vote
4
replies
1.1k
views
DESeq2 - How can we correct for a "Group-specific condition effect" if the condition can be applied to one group only?
DESeq2
4.7 years ago Tamer ▴ 10
5
votes
4
replies
3.3k
views
Using DESeq2 with GlmGamPoi
DESeq2 glmGamPoi scRNAseq
4.7 years ago tatyana.perlova • 0
0
votes
1
reply
1.2k
views
Metatranscriptomics DESeq2 multifactorial sampling
Transcriptomics DESeq2
updated 4.7 years ago by 43k • written 4.7 years ago by • 0
0
votes
2
replies
2.1k
views
Finding the correct version of DESeq2 for my version of R (3.6.1)
error DESeq2 Install
updated 4.7 years ago by 68k • written 4.7 years ago by • 0
7
votes
4
replies
17k
views
How to use combat in order to remove batch effects?
BatchEffect DESeq2 RNASeqData
updated 3.9 years ago by • 0 • written 4.7 years ago by ▴ 20
0
votes
1
reply
991
views
How to analyze ribosome profiling data in the form of a 2x2x2 experiment using DESeq2
DESeq2 RiboSeq RNASeq
updated 4.7 years ago by 43k • written 4.7 years ago by • 0
1
vote
3
replies
1.2k
views
Questions regarding DESeq2 experimental setup and lfcShrink
DESeq2 RNA-seq
updated 4.7 years ago by 43k • written 4.7 years ago by • 0
1
vote
7
replies
2.5k
views
DESeq2: Too many "NA" for adjPvalue
DESeq2
4.7 years ago • updated 3.7 years ago sagharib • 0
0
votes
1
reply
1.1k
views
is docker image using DESeq portable?
bioconductor/bioconductor_docker DESeq2
updated 4.7 years ago by ▴ 140 • written 4.7 years ago by ▴ 20
9
votes
6
replies
40k
views
DESeq2 / PCA Analysis of RNA-seq Data - Best Explanatory Resource?
DESeq2 pcaExplorer
updated 4.7 years ago by 43k • written 4.7 years ago by ▴ 30
2
votes
2
replies
1.3k
views
Negative svalues from DESeq2 lfcShrink with ashr
ashr DESeq2 lfcShrink svalue
4.7 years ago Enrico • 0
0
votes
1
reply
904
views
DESeq2 calling DEGs despite detection in few replicates
DESeq2
updated 4.7 years ago by ★ 1.4k • written 4.7 years ago by • 0
0
votes
2
replies
1.3k
views
DESeq2 design formula and batch correction
DESeq2
updated 4.7 years ago by 43k • written 4.7 years ago by • 0
0
votes
3
replies
3.9k
views
Understanding MA plot distortion
DESeq2 MAplot deseq
updated 4.7 years ago by 43k • written 4.7 years ago by • 0
1
vote
4
replies
2.2k
views
An attempt to better understand DESeq2 dispersion estimation
DESeq2
4.7 years ago Sam ▴ 10
0
votes
1
reply
3.5k
views
Biological replicates in DESeq2
DESeq2 Bioconductor RNASeqR
updated 4.7 years ago by ★ 5.0k • written 4.7 years ago by • 0
1
vote
3
replies
2.1k
views
Batch correction and DESeq2
DESeq2
4.7 years ago Alessia • 0
2
votes
1
reply
733
views
Splitting multiple groups - three different ages
DESeq2
updated 4.7 years ago by 43k • written 4.7 years ago by • 0
4,840 results • Page 31 of 97
Recent ...
Replies
Answer: two questions about limma by Gordon Smyth 53k
Answered here: https://support.bioconductor.org/p/16318/
Comment: upstream git branches of bioc-release by TrentonCollier99 • 0
Thank you very much for taking the time to answer the question. I really appreciate your insights and comments. https://bioc-release.r-univ…
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0
Thank you very much! will take that into consideration
Comment: Large logFC but somewhat high FDR by JKim • 0
Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.
Comment: upstream git branches of bioc-release by Jeroen ▴ 10
OK I have updated https://bioc-release.r-universe.dev accordingly. Let me know if you find version differences when mirroring binaries.
Votes
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
Awards • All
Popular Question to shepherl 4.2k
Popular Question to Gordon Smyth 53k
Popular Question to k___ ▴ 30
Popular Question to efoss ▴ 10
Popular Question to James W. MacDonald 68k
Locations • All
United States, just now
United States, 39 minutes ago
The city by the bay, 50 minutes ago
United States, 1 hour ago
United States, 2 hours ago
Traffic: 761 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6