Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
DNAMethylation
•
reset
1
vote
2
replies
774
views
normalizatino of dna methylation EPIC data
DNA
minfiData
minfiDataEPIC
DNAMethylation
minfi
8 months ago
user_bioinfo
• 0
0
votes
0
replies
249
views
Batch Correction while implementing QSEA package
qsea
MEDIPS
MEDIPSData
DNAMethylation
8 months ago
User3088
• 0
0
votes
0
replies
667
views
Job:
Postdoctoral Research Associate in Computational Epigenomics
Phd
SingleCell
DNAMethylation
Shanghai
JobPosting
13 months ago
xiaolong
• 0
0
votes
7
replies
2.3k
views
Methylation Analysis experiment design using Limma
DNAMethylation
limma
methylationArrayAnalysis
18 months ago
hortense96
• 0
0
votes
0
replies
630
views
DMRcate error need at least two non-NA values to interpolate
DNAMethylation
DMRcate
18 months ago
Macsue
• 0
1
vote
6
replies
1.6k
views
unable to access Annotationhub latest record
DNAMethylation
AnnotationHub
EPICv2manifest
annotation
updated 18 months ago by
Tim Peters
▴ 230 • written 18 months ago by
s.malik
• 0
1
vote
3
replies
2.1k
views
Error in GOmeth function of missMethyl when EPICv2 annotation is used
DNAMethylation
GO
MethylationArray
missMethyl
EPICv2
19 months ago • updated 13 months ago
s.malik
• 0
0
votes
4
replies
2.3k
views
Seeking Strategies for Managing Duplicate CpG Entries in EPIC v2 Manifest
DNAMethylation
EPICv2
IlluminaHumanMethylationEPICmanifest
updated 20 months ago by
James W. MacDonald
68k • written 20 months ago by
rae.alshammari
▴ 20
1
vote
4
replies
1.4k
views
limma design model for categorical variable
DNAMethylation
limmaGUI
biostatistics
limma
updated 20 months ago by
Gordon Smyth
53k • written 20 months ago by
Jitendra
▴ 10
0
votes
2
replies
722
views
Sample-specific methylation values using QSEA
DNAMethylation
cfMeDIP-seq
cfDNA
qsea
20 months ago • updated 8 months ago
User3088
• 0
1
vote
4
replies
1.6k
views
EPIC or EPICv2 demo data of brain samples. FlowSorted.DLPFC.EPIC Availability?
DNAMethylation
MethylationArray
methylationArrayAnalysis
illumina
20 months ago
mikat
• 0
0
votes
1
reply
937
views
topGO() analysis of DMPs in missMethyl methylation analysis
DNAMethylation
missMethyl
Pathways
2.5 years ago
Grace
• 0
2
votes
6
replies
1.9k
views
cpg.annotate() in DMRcate error
DNAMethylation
methylationArrayAnalysis
DMRcate
MethylationArrayData
MethylationArray
updated 2.5 years ago by
Tim Peters
▴ 230 • written 2.5 years ago by
Grace
• 0
2
votes
6
replies
1.7k
views
No enriched GO terms CpGs
DNAMethylation
missMethyl
updated 2.6 years ago by
belinda.phipson
▴ 40 • written 2.6 years ago by
Joana
• 0
0
votes
0
replies
952
views
A survey of computational setups for Illumina Infinium DNA methylation EPIC array pipeline
DNAMethylation
wateRmelon
Computation
minfi
3.2 years ago
calen.p.ryan
• 0
3
votes
8
replies
2.0k
views
Annotation using QSEA package
DNAMethylation
QSEA
MEDIP
4.3 years ago
rtrivedi1
▴ 10
3
votes
5
replies
3.3k
views
Why the LogFC and delta-beta value are different in ChAMP
DNAMethylation
ChAMP
updated 20 months ago by
sup0903
• 0 • written 4.9 years ago by
Hongbii
• 0
17 results • Page
1 of 1
Recent ...
Replies
Comment: DESeq2 for candidate gene analysis
by
piffelpaff
▴ 10
thank you so much for answering Dr. Love!
Answer: DESeq2 for candidate gene analysis
by
Michael Love
43k
Your plan 1 is reasonable. Run DESeq2 on the whole dataset to obtain size factors and moderated dispersion estimates and then extract the u…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
That's weird. Using the example data works for me. ``` > example(read10xCounts) rd10xC> # Mocking up some 10X genomics output. rd10xC> ex…
Comment: Join BOC Sciences at Drug Discovery Chemistry
by
teamardigen
• 0
Sounds like an exciting event for anyone passionate about small molecule innovation. The focus on discovery and optimization really drives …
Votes
Answer: DESeq2 for candidate gene analysis
DESeq2 for candidate gene analysis
Join BOC Sciences at Drug Discovery Chemistry
Drug datasets for RNA-seq
Comment: Check removeBatchEffect effectiveness
Awards
• All
Popular Question
to
Hervé Pagès
16k
Popular Question
to
jf1
• 0
Popular Question
to
Gordon Smyth
53k
Popular Question
to
dan.gatti
• 0
Popular Question
to
shepherl
4.2k
Locations
• All
United States,
14 minutes ago
United States,
23 minutes ago
United States,
27 minutes ago
United States,
33 minutes ago
United States,
48 minutes ago
Traffic: 638 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6