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DNAMethylation
•
reset
1
vote
2
replies
822
views
normalizatino of dna methylation EPIC data
DNA
minfiData
minfiDataEPIC
DNAMethylation
minfi
9 months ago
user_bioinfo
• 0
0
votes
0
replies
286
views
Batch Correction while implementing QSEA package
qsea
MEDIPS
MEDIPSData
DNAMethylation
10 months ago
User3088
• 0
0
votes
0
replies
741
views
Job:
Postdoctoral Research Associate in Computational Epigenomics
Phd
SingleCell
DNAMethylation
Shanghai
JobPosting
15 months ago
xiaolong
• 0
0
votes
7
replies
2.4k
views
Methylation Analysis experiment design using Limma
DNAMethylation
limma
methylationArrayAnalysis
20 months ago • updated 19 months ago
hortense96
• 0
0
votes
0
replies
673
views
DMRcate error need at least two non-NA values to interpolate
DNAMethylation
DMRcate
20 months ago
Macsue
• 0
1
vote
6
replies
1.8k
views
unable to access Annotationhub latest record
DNAMethylation
AnnotationHub
EPICv2manifest
annotation
updated 20 months ago by
Tim Peters
▴ 230 • written 20 months ago by
s.malik
• 0
1
vote
3
replies
2.2k
views
Error in GOmeth function of missMethyl when EPICv2 annotation is used
DNAMethylation
GO
MethylationArray
missMethyl
EPICv2
21 months ago • updated 14 months ago
s.malik
• 0
0
votes
4
replies
2.4k
views
Seeking Strategies for Managing Duplicate CpG Entries in EPIC v2 Manifest
DNAMethylation
EPICv2
IlluminaHumanMethylationEPICmanifest
updated 21 months ago by
James W. MacDonald
68k • written 21 months ago by
rae.alshammari
▴ 20
1
vote
4
replies
1.4k
views
limma design model for categorical variable
DNAMethylation
limmaGUI
biostatistics
limma
updated 22 months ago by
Gordon Smyth
53k • written 22 months ago by
Jitendra
▴ 10
0
votes
2
replies
754
views
Sample-specific methylation values using QSEA
DNAMethylation
cfMeDIP-seq
cfDNA
qsea
22 months ago • updated 10 months ago
User3088
• 0
1
vote
4
replies
1.6k
views
EPIC or EPICv2 demo data of brain samples. FlowSorted.DLPFC.EPIC Availability?
DNAMethylation
MethylationArray
methylationArrayAnalysis
illumina
22 months ago
mikat
• 0
0
votes
1
reply
975
views
topGO() analysis of DMPs in missMethyl methylation analysis
DNAMethylation
missMethyl
Pathways
2.6 years ago
Grace
• 0
2
votes
6
replies
1.9k
views
cpg.annotate() in DMRcate error
DNAMethylation
methylationArrayAnalysis
DMRcate
MethylationArrayData
MethylationArray
updated 2.6 years ago by
Tim Peters
▴ 230 • written 2.6 years ago by
Grace
• 0
2
votes
6
replies
1.8k
views
No enriched GO terms CpGs
DNAMethylation
missMethyl
updated 2.8 years ago by
belinda.phipson
▴ 40 • written 2.8 years ago by
Joana
• 0
0
votes
0
replies
1.0k
views
A survey of computational setups for Illumina Infinium DNA methylation EPIC array pipeline
DNAMethylation
wateRmelon
Computation
minfi
3.3 years ago
calen.p.ryan
• 0
3
votes
8
replies
2.1k
views
Annotation using QSEA package
DNAMethylation
QSEA
MEDIP
4.5 years ago
rtrivedi1
▴ 10
3
votes
5
replies
3.4k
views
Why the LogFC and delta-beta value are different in ChAMP
DNAMethylation
ChAMP
updated 21 months ago by
sup0903
• 0 • written 5.0 years ago by
Hongbii
• 0
17 results • Page
1 of 1
Recent ...
Replies
Comment: DECIPHER DesignProbes unable to design FISH-probes
by
Erik Wright
▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
by
Michael Love
43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment
by
Michael Love
43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Answer: PTM analysis in LIMPA
by
Gordon Smyth
53k
For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…
Answer: problem reading bam files into nucleR
by
James W. MacDonald
68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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