Bioconductor DNAMethylation

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DNA minfiData minfiDataEPIC DNAMethylation minfi

8 months ago user_bioinfo • 0

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249

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qsea MEDIPS MEDIPSData DNAMethylation

8 months ago User3088 • 0

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Phd SingleCell DNAMethylation Shanghai JobPosting

13 months ago xiaolong • 0

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DNAMethylation limma methylationArrayAnalysis

18 months ago hortense96 • 0

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DNAMethylation DMRcate

18 months ago Macsue • 0

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DNAMethylation AnnotationHub EPICv2manifest annotation

updated 18 months ago by Tim Peters ▴ 230 • written 18 months ago by s.malik • 0

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DNAMethylation GO MethylationArray missMethyl EPICv2

19 months ago • updated 13 months ago s.malik • 0

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DNAMethylation EPICv2 IlluminaHumanMethylationEPICmanifest

updated 20 months ago by James W. MacDonald 68k • written 20 months ago by rae.alshammari ▴ 20

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DNAMethylation limmaGUI biostatistics limma

updated 20 months ago by Gordon Smyth 53k • written 20 months ago by Jitendra ▴ 10

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DNAMethylation cfMeDIP-seq cfDNA qsea

20 months ago • updated 8 months ago User3088 • 0

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DNAMethylation MethylationArray methylationArrayAnalysis illumina

20 months ago mikat • 0

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DNAMethylation missMethyl Pathways

2.5 years ago Grace • 0

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DNAMethylation methylationArrayAnalysis DMRcate MethylationArrayData MethylationArray

updated 2.5 years ago by Tim Peters ▴ 230 • written 2.5 years ago by Grace • 0

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DNAMethylation missMethyl

updated 2.6 years ago by belinda.phipson ▴ 40 • written 2.6 years ago by Joana • 0

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DNAMethylation wateRmelon Computation minfi

3.2 years ago calen.p.ryan • 0

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DNAMethylation QSEA MEDIP

4.3 years ago rtrivedi1 ▴ 10

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DNAMethylation ChAMP

updated 20 months ago by sup0903 • 0 • written 4.9 years ago by Hongbii • 0

17 results • Page 1 of 1

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Comment: DESeq2 for candidate gene analysis by piffelpaff ▴ 10

thank you so much for answering Dr. Love!

Answer: DESeq2 for candidate gene analysis by Michael Love 43k

Your plan 1 is reasonable. Run DESeq2 on the whole dataset to obtain size factors and moderated dispersion estimates and then extract the u…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k

Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k

That's weird. Using the example data works for me. ``` > example(read10xCounts) rd10xC> # Mocking up some 10X genomics output. rd10xC> ex…

Comment: Join BOC Sciences at Drug Discovery Chemistry by teamardigen • 0

Sounds like an exciting event for anyone passionate about small molecule innovation. The focus on discovery and optimization really drives …

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Answer: DESeq2 for candidate gene analysis

DESeq2 for candidate gene analysis

Join BOC Sciences at Drug Discovery Chemistry

Drug datasets for RNA-seq

Comment: Check removeBatchEffect effectiveness

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