Bioconductor DNAMethylation

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DNA minfiData minfiDataEPIC DNAMethylation minfi

9 months ago user_bioinfo • 0

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288

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qsea MEDIPS MEDIPSData DNAMethylation

10 months ago User3088 • 0

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Phd SingleCell DNAMethylation Shanghai JobPosting

15 months ago xiaolong • 0

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DNAMethylation limma methylationArrayAnalysis

20 months ago • updated 19 months ago hortense96 • 0

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674

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DNAMethylation DMRcate

20 months ago Macsue • 0

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DNAMethylation AnnotationHub EPICv2manifest annotation

updated 20 months ago by Tim Peters ▴ 230 • written 20 months ago by s.malik • 0

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DNAMethylation GO MethylationArray missMethyl EPICv2

21 months ago • updated 14 months ago s.malik • 0

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DNAMethylation EPICv2 IlluminaHumanMethylationEPICmanifest

updated 21 months ago by James W. MacDonald 68k • written 21 months ago by rae.alshammari ▴ 20

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DNAMethylation limmaGUI biostatistics limma

updated 22 months ago by Gordon Smyth 53k • written 22 months ago by Jitendra ▴ 10

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754

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DNAMethylation cfMeDIP-seq cfDNA qsea

22 months ago • updated 10 months ago User3088 • 0

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DNAMethylation MethylationArray methylationArrayAnalysis illumina

22 months ago mikat • 0

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DNAMethylation missMethyl Pathways

2.6 years ago Grace • 0

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DNAMethylation methylationArrayAnalysis DMRcate MethylationArrayData MethylationArray

updated 2.6 years ago by Tim Peters ▴ 230 • written 2.6 years ago by Grace • 0

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DNAMethylation missMethyl

updated 2.8 years ago by belinda.phipson ▴ 40 • written 2.8 years ago by Joana • 0

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DNAMethylation wateRmelon Computation minfi

3.3 years ago calen.p.ryan • 0

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DNAMethylation QSEA MEDIP

4.5 years ago rtrivedi1 ▴ 10

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DNAMethylation ChAMP

updated 21 months ago by sup0903 • 0 • written 5.0 years ago by Hongbii • 0

17 results • Page 1 of 1

Recent ...

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Answer: Important: Bioconductor Release 3.22 Delayed by Jasonalker09A • 0

Thanks for @[msn games][1] the update. Connectivity issues can definitely cause a cascade of errors, so delaying the release is completely …

Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k

The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…

Answer: PTM analysis in LIMPA by Gordon Smyth 53k

For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…

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C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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