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DNAMethylation
•
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1
vote
2
replies
553
views
normalizatino of dna methylation EPIC data
DNA
minfiData
minfiDataEPIC
DNAMethylation
minfi
4 weeks ago
user_bioinfo
• 0
0
votes
0
replies
109
views
Batch Correction while implementing QSEA package
qsea
MEDIPS
MEDIPSData
DNAMethylation
7 weeks ago
User3088
• 0
0
votes
0
replies
391
views
Job:
Postdoctoral Research Associate in Computational Epigenomics
Phd
SingleCell
DNAMethylation
Shanghai
JobPosting
6 months ago
xiaolong
• 0
0
votes
7
replies
1.8k
views
Methylation Analysis experiment design using Limma
DNAMethylation
limma
methylationArrayAnalysis
11 months ago
hortense96
• 0
0
votes
0
replies
456
views
DMRcate error need at least two non-NA values to interpolate
DNAMethylation
DMRcate
11 months ago
Macsue
• 0
1
vote
6
replies
1.2k
views
unable to access Annotationhub latest record
DNAMethylation
AnnotationHub
EPICv2manifest
annotation
updated 11 months ago by
Tim Peters
▴ 230 • written 11 months ago by
s.malik
• 0
1
vote
3
replies
1.8k
views
Error in GOmeth function of missMethyl when EPICv2 annotation is used
DNAMethylation
GO
MethylationArray
missMethyl
EPICv2
12 months ago • updated 6 months ago
s.malik
• 0
0
votes
4
replies
1.8k
views
Seeking Strategies for Managing Duplicate CpG Entries in EPIC v2 Manifest
DNAMethylation
EPICv2
IlluminaHumanMethylationEPICmanifest
updated 13 months ago by
James W. MacDonald
68k • written 13 months ago by
rae.alshammari
▴ 10
1
vote
4
replies
1.1k
views
limma design model for categorical variable
DNAMethylation
limmaGUI
biostatistics
limma
updated 13 months ago by
Gordon Smyth
52k • written 13 months ago by
Jitendra
▴ 10
0
votes
2
replies
554
views
Sample-specific methylation values using QSEA
DNAMethylation
cfMeDIP-seq
cfDNA
qsea
13 months ago • updated 7 weeks ago
User3088
• 0
1
vote
4
replies
1.3k
views
EPIC or EPICv2 demo data of brain samples. FlowSorted.DLPFC.EPIC Availability?
DNAMethylation
MethylationArray
methylationArrayAnalysis
illumina
13 months ago
mikat
• 0
0
votes
1
reply
774
views
topGO() analysis of DMPs in missMethyl methylation analysis
DNAMethylation
missMethyl
Pathways
23 months ago
Grace
• 0
2
votes
6
replies
1.6k
views
cpg.annotate() in DMRcate error
DNAMethylation
methylationArrayAnalysis
DMRcate
MethylationArrayData
MethylationArray
updated 23 months ago by
Tim Peters
▴ 230 • written 23 months ago by
Grace
• 0
2
votes
6
replies
1.4k
views
No enriched GO terms CpGs
DNAMethylation
missMethyl
updated 2.0 years ago by
belinda.phipson
▴ 40 • written 2.0 years ago by
Joana
• 0
0
votes
0
replies
820
views
A survey of computational setups for Illumina Infinium DNA methylation EPIC array pipeline
DNAMethylation
wateRmelon
Computation
minfi
2.6 years ago
calen.p.ryan
• 0
3
votes
8
replies
1.8k
views
Annotation using QSEA package
DNAMethylation
QSEA
MEDIP
3.8 years ago
rtrivedi1
▴ 10
3
votes
5
replies
3.0k
views
Why the LogFC and delta-beta value are different in ChAMP
DNAMethylation
ChAMP
updated 13 months ago by
sup0903
• 0 • written 4.3 years ago by
Hongbii
• 0
17 results • Page
1 of 1
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Replies
Answer: Annotation package for Manduca sexta
by
shepherl
4.1k
Yes through the AnnotationHub ``` > library(AnnotationHub) > ah = AnnotationHub() snapshotDate(): 2024-10-28 > query(ah, "Manduc…
Comment: Ensembl site unresponsive via biomaRt
by
mdeea123
▴ 10
Thanks for the link. I will contact them directly, I wish they had some sort of status page.
Comment: Ensembl site unresponsive via biomaRt
by
Mike Smith
★ 6.6k
I think this is an unrelated issue. The original post includes the message `Error: 'curl_parse_url' is not an exported object from 'namesp…
Comment: pairedGSEA input files
by
shdam
▴ 10
Hi Sara, Apologies for the slow response! James is exactly right. Both `salmon` and `kallisto` can produce transcript counts, if you map …
Comment: Unused arguments error without used arguments in GSVA?
by
michaelarringtony
• 0
Perhaps from a direct call to gsva without the parameter [Sprunki Pyramixed][1] object [1]: https://pyramixed.io/
Votes
Comment: Limma comparing gene expression between base line and one treatment
Answer: Is there any chance to solve "the model matrix is not full rank" in DESeq2?
clusterProfiler-GO enrichment Error
A: Machine learning in R book
Data preparation and Machine learning on time course RNAseq data
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Gordon Smyth
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