Showing : Diffbind • reset
0
votes
6
replies
1.9k
views
two factor chip with diffbind and edgeR (or DESeq2).
diffbind edger
updated 7.8 years ago by ★ 29k • written 7.8 years ago by ▴ 30
1
vote
5
replies
3.2k
views
DiffBind does not run in parallel
diffbind parallel biocparallel
updated 7.8 years ago by ★ 5.2k • written 7.8 years ago by • 0
0
votes
1
reply
1.2k
views
Diffbind: How to compare the DBs called with and without a blocking factor
diffbind differential binding analysis blocking
updated 7.8 years ago by ★ 5.2k • written 7.9 years ago by • 0
2
votes
4
replies
2.3k
views
DiffBind MA plot
diffbind maplot
updated 7.8 years ago by ★ 5.2k • written 7.8 years ago by • 0
2
votes
4
replies
1.9k
views
DiffBind report and MA-plot DB difference
diffbind differential binding analysis R report
updated 7.8 years ago by ★ 5.2k • written 7.8 years ago by • 0
0
votes
6
replies
1.9k
views
Unexpected results in the dba.report output files
diffbind
updated 7.8 years ago by • 0 • written 8.0 years ago by • 0
2
votes
5
replies
1.8k
views
Mapping DESeq2 output back to chromosomal positions
deseq2 deseq diffbind differential binding analysis
updated 7.9 years ago by 43k • written 7.9 years ago by ▴ 60
2
votes
4
replies
1.5k
views
How to judge DESeq2_block and EdgeR_block result
diffbind Deseq2 edger differential binding analysis
updated 7.9 years ago by ★ 5.2k • written 7.9 years ago by • 0
3
votes
7
replies
2.7k
views
dba.count with pre-defined regions
dba.count dba chipseq diffbind
updated 7.9 years ago by ★ 5.2k • written 7.9 years ago by ▴ 10
0
votes
2
replies
2.2k
views
DiffBind remove low count intervals for differential analysis
diffbind filtering
7.9 years ago gasta88 • 0
1
vote
3
replies
3.2k
views
Using HOMER called peaks in DiffBind
diffbind HOMER
7.9 years ago Hesh ▴ 10
0
votes
1
reply
1.5k
views
DiffBind dba.peakset + bRetrieve=T gives peak scores? or raw counts?
Diffbind
updated 7.9 years ago by ★ 5.2k • written 7.9 years ago by • 0
0
votes
1
reply
1.8k
views
How to control the size of labels on heatmaps in DiffBind
diffbind labels heatmap
updated 7.9 years ago by ★ 5.2k • written 7.9 years ago by • 0
2
votes
2
replies
1.4k
views
DiffBind Heatmap Omitting Results?
diffbind heatmap.3
updated 7.9 years ago by ★ 5.2k • written 7.9 years ago by ▴ 30
1
vote
1
reply
2.8k
views
Importing Chip-Seq Peak MACS2 output (.xls) files into DBA object with Diffbind?
diffbind macs2 chip-seq
7.9 years ago chunhong.liu07 ▴ 10
0
votes
3
replies
1.8k
views
Inconsistent peak width with DiffBind "summit" function
diffbind
updated 8.0 years ago by ★ 5.2k • written 8.0 years ago by • 0
0
votes
6
replies
2.6k
views
Warnings when update DiffBind and running errors
diffbind atac-seq dba.count
updated 8.0 years ago by ★ 5.2k • written 8.0 years ago by • 0
5
votes
6
replies
6.4k
views
Analyzing data without replicates using DiffBind
diffbind bioconductor differential binding analysis without replicate chipseq
8.0 years ago Hesh ▴ 10
0
votes
2
replies
1.5k
views
DiffBind dba.report inconsistent output when using filter parameters
diffbind dba.report filtering
8.0 years ago konstantopoulos • 0
2
votes
2
replies
1.1k
views
Cleaning up DiffBind counts in relation to chromosome map
diffbind chipseq differential binding analysis
updated 8.0 years ago by ★ 5.2k • written 8.0 years ago by ▴ 60
1
vote
4
replies
2.7k
views
DiffBind error with dba.count after update
diffbind read counting warning message chromatin atac-seq
updated 8.0 years ago by ▴ 670 • written 8.0 years ago by • 0
3
votes
9
replies
3.7k
views
Error When using dba.count() in DiffBind
dba.count atac-seq diffbind
updated 8.0 years ago by ▴ 670 • written 8.0 years ago by • 0
1
vote
3
replies
1.6k
views
Structure of DiffBind dba.count matrix equivalent to DESeqDataSetFromMatrix input?
deseq2 diffbind
updated 8.0 years ago by ★ 5.2k • written 8.0 years ago by ▴ 60
16
votes
12
replies
9.2k
views
Diffbind: edgeR or DESeq2 ?
diffbind medip-seq edger deseq2
updated 14 months ago by • 0 • written 9.7 years ago by ▴ 60
0
votes
1
reply
1.4k
views
Error with dba.count function code
diffbind dba.count atac-seq
updated 8.0 years ago by ▴ 670 • written 8.0 years ago by • 0
0
votes
3
replies
2.0k
views
Error with dba.count function
diffbind dba.count
updated 8.1 years ago by ▴ 670 • written 8.1 years ago by • 0
1
vote
2
replies
1.0k
views
DiffBind - Losing replicate information?
diffbind
updated 8.1 years ago by ★ 5.2k • written 8.1 years ago by • 0
0
votes
1
reply
1.5k
views
Pseudo-coloring DiffBind volcano plot
diffbind chipseq volcanoplot ggplot2
updated 8.1 years ago by ★ 5.2k • written 8.1 years ago by ▴ 60
1
vote
2
replies
1.7k
views
DiffBind DESeq2 MA plot skewed
diffbind deseq2 maplot
updated 8.1 years ago by ★ 5.2k • written 8.1 years ago by ▴ 60
1
vote
3
replies
2.6k
views
DiffBind error: diffbind DESeq2 analysis has not been run for this contrast
DiffBind R chipseq
updated 23 months ago by ★ 5.2k • written 8.1 years ago by • 0
1
vote
5
replies
3.1k
views
Problem reading Bed file using dba.count in DiffBind
DiffBind dba.count Chip-Seq Differential analysis
updated 4.6 years ago by • 0 • written 8.2 years ago by ▴ 40
1
vote
1
reply
3.3k
views
DiffBind broad and narrow peak identification
diffbind r chipseq
updated 8.1 years ago by ★ 5.2k • written 8.2 years ago by • 0
2
votes
3
replies
2.8k
views
MA plot DiffBind in ggplot2
diffbind ggplot2 r chipseq
updated 8.1 years ago by ★ 5.2k • written 8.2 years ago by • 0
0
votes
1
reply
980
views
diffbind : Is it possible to analyze one sample only ?
diffbind
updated 8.1 years ago by ★ 5.2k • written 8.2 years ago by ▴ 60
1
vote
1
reply
1.1k
views
Diffbind Consensus vs Differential peak sets from same count
diffbind chipseq
updated 8.1 years ago by ★ 5.2k • written 8.2 years ago by ▴ 60
2
votes
3
replies
2.0k
views
Principal component analysis produced by DiffBind, but PC1 with smaller variation than PC2
diffbind PCA
updated 8.1 years ago by ★ 5.2k • written 8.1 years ago by ▴ 20
2
votes
5
replies
2.4k
views
Diffbind: dba.plot retrieve variance explained
diffbind chipqc
updated 8.2 years ago by ★ 5.2k • written 8.2 years ago by ▴ 60
3
votes
5
replies
2.2k
views
There is no dba.plotVolcano function in DiffBind and how to upgrade DiffBind to version 2.4.8
diffbind
updated 8.2 years ago by ★ 5.2k • written 8.2 years ago by ▴ 20
1
vote
2
replies
1.5k
views
DiffBind dba.plotHeatmap Error in hclustfun(distfun(x))
diffbind
updated 8.2 years ago by ★ 5.2k • written 8.2 years ago by ▴ 20
0
votes
1
reply
1.2k
views
Diffbind: Does Heatmap use count or score? and for which intervals ?
diffbind
updated 8.2 years ago by ★ 5.2k • written 8.4 years ago by ▴ 60
2
votes
10
replies
2.9k
views
DiffBind consensus peak help
diffbind r chipseq
updated 8.2 years ago by ★ 5.2k • written 8.2 years ago by • 0
0
votes
2
replies
1.6k
views
diffbind Error: cannot allocate vector of size 1024.0 Mb
R diffbind
8.2 years ago ekgush • 0
0
votes
3
replies
1.1k
views
comparing CHIP-seq with published data using Diffbind
diffbind
updated 8.2 years ago by ★ 5.2k • written 8.2 years ago by • 0
1
vote
2
replies
1.7k
views
How to set DiffBind dba.plotHeatmap colSideCols option
diffbind
updated 8.2 years ago by ★ 5.2k • written 8.2 years ago by ▴ 20
1
vote
2
replies
1.2k
views
DiffBind masks for counts
diffbind chipseq
updated 8.2 years ago by ★ 5.2k • written 8.2 years ago by ▴ 60
2
votes
2
replies
1.8k
views
DiffBind contrasts issue
diffbind chipseq
updated 8.2 years ago by ★ 5.2k • written 8.2 years ago by ▴ 60
0
votes
4
replies
2.2k
views
How to set the parameter "fragmentSize" in DiffBind and set parameter for paired-end CHIP-seq data?
diffbind software error
updated 8.3 years ago by ★ 5.2k • written 8.3 years ago by • 0
0
votes
2
replies
2.6k
views
Diffbind heatmap color change
diffbind rory stark
8.3 years ago andrew.gehrke • 0
0
votes
2
replies
951
views
how overlap between peaks is calculated in diffbind
diffbind
8.3 years ago aimin.at.work ▴ 10
2
votes
2
replies
2.0k
views
How to use Diffbind as complete beginner?
diffbind chip-seq
updated 8.3 years ago by ▴ 670 • written 8.3 years ago by ▴ 10
678 results • Page 9 of 14
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Que notícia incrivel sobre o BioC2026 Para quem gosta de aproveitar o conteudo online, também e possvel Baixar [snaptube versão antiga][1] …
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Keeping up with Ensembls latest release ensures access to cutting-edge genomic information. For those balancing research and leisure, a mob…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
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Hi, You have correctly identified the issue: AUCell's automatic threshold selection is conservative by design, aiming for specificity to…
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Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
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Answer: Suppress warning in RHDF5 write
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