Showing : GVIZ • reset
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1.2k
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How to increase font for gene name and increase arrow size for GVIZ's ( UcscTrack function ) track?
DMRcate Gviz
updated 3 hours ago by • 0 • written 3.1 years ago by ▴ 50
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0
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177
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Setting ylims in bam coverage plot and assigning compound sashimi numbers to overlay plots
Coverage Gviz sashimi
3 months ago Marco • 0
0
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3
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1.4k
views
How to plot gene names in Gviz plotTracks and get the ideogram track to work (US-based)?
gviz Saccharomyces_cerevisiae Gviz ideogram
updated 5 months ago by • 0 • written 15 months ago by • 0
0
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3
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471
views
Gviz and custom database
Gviz
updated 7 months ago by 67k • written 7 months ago by • 0
1
vote
2
replies
1.6k
views
DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, parametric = FALSE, : NA/NaN/Inf in foreign function call (arg 1)"
DMRcate Gviz
updated 8 months ago by ▴ 200 • written 22 months ago by ▴ 10
0
votes
1
reply
432
views
GC content track on GVIZ
Gviz
updated 10 months ago by 67k • written 10 months ago by • 0
1
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3
replies
2.0k
views
Error in the UcscTrack() in package "Gviz"
DMR Methylation R Gviz
updated 13 months ago by ▴ 750 • written 3.7 years ago by • 0
0
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0
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589
views
Gviz::GeneRegionTrack error with standard TxDb: "adding seqlevels to a TxDb object is not supported"
Gviz
14 months ago dbsgtk • 0
1
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0
replies
756
views
Gviz : UcscTrack
rtracklayer UCSC Gviz
14 months ago yujin ▴ 10
1
vote
3
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866
views
Error in Gviz (actually, rtracklayer) | IdeogramTrack
rtracklayer Gviz
updated 14 months ago by 16k • written 14 months ago by ▴ 10
0
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5
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2.3k
views
Gviz: UcscTrack and "GC Percent" information
Gviz coMET
2.1 years ago • updated 15 months ago Daniel E. Weeks ▴ 30
0
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2
replies
743
views
how to add annotation on individual track
Gviz
updated 20 months ago by ▴ 750 • written 20 months ago by ▴ 50
0
votes
0
replies
569
views
Coloring reads in AlignmentsTrack based on mapq
Gviz
22 months ago Vinicius Henrique da Silva ▴ 40
0
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0
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905
views
DMR.plot "Error: Too many stacks to draw"
DMRcate Gviz GV
22 months ago gilliangoobie • 0
0
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2
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1.6k
views
Gviz: Filtering AlignmentsTrack by read names
Gvi Gviz
updated 2.4 years ago by 67k • written 2.4 years ago by • 0
0
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1
reply
1.3k
views
GViz plot coverage for multiple chromosome and multiple samples using BAM files and save them as a single pdf report
Gviz
2.5 years ago rohitsatyam102 ▴ 20
4
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1
reply
2.0k
views
How to add gene symbol in GeneRegionTrack in Gviz
Gviz
updated 2.6 years ago by 67k • written 2.6 years ago by • 0
1
vote
3
replies
2.4k
views
GVIZ giving error with loading hg38 genome
R Gviz
2.7 years ago RUser743 • 0
1
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2
replies
1.8k
views
Gviz and datatracks
Gviz
updated 2.8 years ago by • 0 • written 3.0 years ago by ▴ 670
0
votes
0
replies
699
views
Color of 2nd exon
GViz
3.0 years ago underscore • 0
1
vote
1
reply
1.1k
views
Gviz DataTrack data transformation on the fly
aggregation Gviz DataTrack
updated 3.0 years ago by ▴ 750 • written 3.0 years ago by ▴ 10
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0
replies
817
views
Modify y axis or add second y axis in Gviz
OverlayTrack Gviz
3.0 years ago Robert ▴ 10
4
votes
4
replies
2.7k
views
Gviz: ylim of the AlignmentsTrack
gviz gviz-package
updated 3.0 years ago by ▴ 120 • written 6.3 years ago by ▴ 10
0
votes
0
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723
views
Y axis Data Track GVIZ
GVIZ
3.2 years ago • updated 3.1 years ago rbenel ▴ 40
1
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1
reply
1.8k
views
GVIZ on R not loading mm10 from UCSC
Gviz
3.2 years ago RUser743 • 0
0
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3
replies
1.2k
views
Details AnnotationTrack swap densityplot and connectors
Gviz
3.3 years ago Hartorthereal • 0
1
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3
replies
1.6k
views
Gradient dotplot
Gviz
3.3 years ago sophieagger • 0
0
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0
replies
999
views
One read per line and other ordering of reads in Gviz
Gviz
3.3 years ago pillailab1 • 0
0
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4
replies
1.5k
views
window parameter in DataTrack function with a single sample
Gviz
3.3 years ago • updated 3.2 years ago rbenel ▴ 40
0
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1
reply
1.3k
views
Gviz: change position of transcriptAnnotation
Gviz
updated 3.4 years ago by 67k • written 3.4 years ago by ▴ 10
0
votes
4
replies
1.6k
views
AlignmentsTrack empty plot
Coverage RNASeq plot Gviz
updated 23 months ago by 67k • written 3.4 years ago by • 0
1
vote
3
replies
1.4k
views
Can't produce a generegiontrack from my txdb anymore
gviz GenomicFeatures
3.4 years ago A.J. ▴ 20
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0
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1.1k
views
Combining dataTracks in Gviz by averaging or subtraction
Gviz
3.6 years ago gdeniz • 0
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0
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936
views
Gviz - Fixed width of title panel on left
Gviz
3.6 years ago rheery • 0
0
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0
replies
841
views
Gviz: set colors for UTRs
plot color Gviz utr
3.7 years ago ginlucks • 0
0
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3
replies
1.2k
views
Gviz featureAnnotation disappear when zooming in
Gviz
updated 3.7 years ago by 67k • written 3.7 years ago by • 0
0
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0
replies
1.2k
views
Gviz import lor reads from bam file
Gviz longreads
3.8 years ago ginlucks • 0
0
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1
reply
921
views
two tracks have the same axis
plot Gviz
4.1 years ago 腾 • 0
0
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2
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1.2k
views
Can we align all the names of the transcripts (GeneRegionTrack) in the plotTracks() output?
Annotation Alignment Gviz
4.2 years ago Vaibhav • 0
0
votes
2
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1.2k
views
Gviz vertical text labels
Gviz
updated 4.2 years ago by 67k • written 4.2 years ago by ▴ 90
0
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1
reply
1.1k
views
Gviz, keeping strand information while zooming in
Gviz strand
4.2 years ago svenbioinf • 0
2
votes
2
replies
1.5k
views
Can't display protein domain data from UCSC table unipDomain using Gviz
Gviz protein visualization UcscTrack protein domains
updated 4.3 years ago by 67k • written 4.3 years ago by ▴ 10
0
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1
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1.2k
views
Gviz package for plotting DMRs
Gviz DMRs
updated 4.4 years ago by ▴ 750 • written 4.5 years ago by • 0
0
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3
replies
2.6k
views
Is it possible to group multiple bigWig files in Gviz DataTrack?
Gviz
4.5 years ago roman.hillje • 0
1
vote
3
replies
996
views
Highlight uniq transcripts in Gviz
Gviz
updated 4.6 years ago by ★ 4.0k • written 4.6 years ago by • 0
0
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2
replies
1.2k
views
Gviz AlignmentsTrack: how to prevent reads from overlapping each other
Gviz
updated 4.6 years ago by ▴ 750 • written 4.6 years ago by • 0
0
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2
replies
1.3k
views
Error in value[[3L]](cond) : 'end' must be <= 536870912 with Gviz::plotTracks
Gviz plotTracks
updated 4.8 years ago by ▴ 750 • written 4.9 years ago by • 0
0
votes
4
replies
1.4k
views
col.interactions.types for gviz InteractionTrack from the GenomicInteractions
GenomicInteractions gviz
updated 4.9 years ago by ▴ 140 • written 4.9 years ago by ▴ 30
0
votes
1
reply
1.1k
views
How to modify centromere depiction in Gviz IdeogramTrack?
Gviz
updated 4.9 years ago by ▴ 750 • written 5.5 years ago by ▴ 10
1
vote
5
replies
1.3k
views
Plotting DMRs (Differentially Methylated Regions) using Gviz package in R
Gviz
updated 4.9 years ago by 67k • written 4.9 years ago by ▴ 10
50 results • Page 1 of 1
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Comment: RnBeads::combine() - error? by Urotree • 0
pheno <- rnb.set.arrays@pheno # Phenotypic data sites <- rnb.set.arrays@sites # CpG site definitions (data.frame) meth <- rnb.set…
Comment: RnBeads::combine() - error? by Urotree • 0
![enter image description here][1] [1]: /media/images/40d9778d-b044-4405-9b3d-2ba835f6 Hi, after I convert to RnBiseqSet, it shows "All…
Comment: RnBeads::combine() - error? by Urotree • 0
rnb.set.biseq <- RnBiseqSet( pheno = pheno, sites = sites, meth = meth, covg = NULL, # This can be NULL if coverage …
Answer: How to increase font for gene name and increase arrow size for GVIZ's ( UcscTra by ming • 0
`fontsize` for title font size, `fontsize.group` for gene symbol font size tx.track <- GeneRegionTrack(hg38.gtf, …
Answer: How do I fix an odd voom plot in a combined dataset? by Gordon Smyth 52k
voom is a DE analysis method rather than a normalization method. voom expects the design matrix to be the same complete design matrix that …
Votes
Answer: enrichGOgradient color change
How do I fix an odd voom plot in a combined dataset?
Answer: Warning message when running limma with covariates
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
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