Showing : Gviz • reset
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Simple confidence intervall Gviz
Gviz
9 months ago William • 0
0
votes
1
reply
1.7k
views
How to increase font for gene name and increase arrow size for GVIZ's ( UcscTrack function ) track?
DMRcate Gviz
updated 11 months ago by • 0 • written 4.0 years ago by ▴ 60
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1
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678
views
Setting ylims in bam coverage plot and assigning compound sashimi numbers to overlay plots
Coverage Gviz sashimi
updated 6 months ago by • 0 • written 14 months ago by • 0
0
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3
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1.9k
views
How to plot gene names in Gviz plotTracks and get the ideogram track to work (US-based)?
gviz Saccharomyces_cerevisiae Gviz ideogram
updated 16 months ago by • 0 • written 2.2 years ago by • 0
0
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3
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980
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Gviz and custom database
Gviz
updated 18 months ago by 68k • written 18 months ago by • 0
1
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2
replies
2.3k
views
DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, parametric = FALSE, : NA/NaN/Inf in foreign function call (arg 1)"
DMRcate Gviz
updated 19 months ago by ▴ 230 • written 2.8 years ago by ▴ 10
0
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1
reply
697
views
GC content track on GVIZ
Gviz
updated 22 months ago by 68k • written 22 months ago by • 0
1
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3
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2.6k
views
Error in the UcscTrack() in package "Gviz"
DMR Methylation R Gviz
updated 2.1 years ago by ▴ 750 • written 4.6 years ago by • 0
0
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0
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857
views
Gviz::GeneRegionTrack error with standard TxDb: "adding seqlevels to a TxDb object is not supported"
Gviz
2.1 years ago dbsgtk • 0
1
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0
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1.0k
views
Gviz : UcscTrack
rtracklayer UCSC Gviz
2.1 years ago yujin ▴ 10
1
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3
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1.2k
views
Error in Gviz (actually, rtracklayer) | IdeogramTrack
rtracklayer Gviz
updated 2.1 years ago by 16k • written 2.1 years ago by ▴ 10
0
votes
5
replies
2.9k
views
Gviz: UcscTrack and "GC Percent" information
Gviz coMET
3.0 years ago • updated 2.2 years ago Daniel E. Weeks ▴ 30
0
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2
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987
views
how to add annotation on individual track
Gviz
updated 2.6 years ago by ▴ 750 • written 2.6 years ago by ▴ 60
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0
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766
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Coloring reads in AlignmentsTrack based on mapq
Gviz
2.8 years ago Vinicius Henrique da Silva ▴ 40
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1.2k
views
DMR.plot "Error: Too many stacks to draw"
DMRcate Gviz GV
2.8 years ago gilliangoobie • 0
0
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2
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1.9k
views
Gviz: Filtering AlignmentsTrack by read names
Gvi Gviz
updated 3.4 years ago by 68k • written 3.4 years ago by • 0
0
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1
reply
1.7k
views
GViz plot coverage for multiple chromosome and multiple samples using BAM files and save them as a single pdf report
Gviz
3.4 years ago rohitsatyam102 ▴ 20
4
votes
1
reply
2.5k
views
How to add gene symbol in GeneRegionTrack in Gviz
Gviz
updated 3.5 years ago by 68k • written 3.5 years ago by • 0
1
vote
3
replies
2.9k
views
GVIZ giving error with loading hg38 genome
R Gviz
3.6 years ago RUser743 • 0
1
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2
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2.2k
views
Gviz and datatracks
Gviz
updated 3.8 years ago by • 0 • written 3.9 years ago by ▴ 670
0
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0
replies
884
views
Color of 2nd exon
GViz
3.9 years ago underscore • 0
1
vote
1
reply
1.4k
views
Gviz DataTrack data transformation on the fly
aggregation Gviz DataTrack
updated 3.9 years ago by ▴ 750 • written 3.9 years ago by ▴ 10
0
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0
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1.0k
views
Modify y axis or add second y axis in Gviz
OverlayTrack Gviz
3.9 years ago Robert ▴ 10
4
votes
4
replies
3.1k
views
Gviz: ylim of the AlignmentsTrack
gviz gviz-package
updated 4.0 years ago by ▴ 120 • written 7.2 years ago by ▴ 10
0
votes
0
replies
882
views
Y axis Data Track GVIZ
GVIZ
4.1 years ago • updated 4.0 years ago rbenel ▴ 50
1
vote
1
reply
2.2k
views
GVIZ on R not loading mm10 from UCSC
Gviz
4.2 years ago RUser743 • 0
0
votes
3
replies
1.5k
views
Details AnnotationTrack swap densityplot and connectors
Gviz
4.2 years ago Hartorthereal • 0
1
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3
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1.9k
views
Gradient dotplot
Gviz
4.2 years ago sophieagger • 0
0
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0
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1.2k
views
One read per line and other ordering of reads in Gviz
Gviz
4.3 years ago pillailab1 • 0
0
votes
4
replies
1.9k
views
window parameter in DataTrack function with a single sample
Gviz
4.3 years ago • updated 4.1 years ago rbenel ▴ 50
0
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1
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1.6k
views
Gviz: change position of transcriptAnnotation
Gviz
updated 4.3 years ago by 68k • written 4.3 years ago by ▴ 10
0
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4
replies
2.0k
views
AlignmentsTrack empty plot
Coverage RNASeq plot Gviz
updated 2.9 years ago by 68k • written 4.4 years ago by • 0
1
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3
replies
1.7k
views
Can't produce a generegiontrack from my txdb anymore
gviz GenomicFeatures
4.4 years ago • updated 4.3 years ago A.J. ▴ 20
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0
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1.3k
views
Combining dataTracks in Gviz by averaging or subtraction
Gviz
4.6 years ago gdeniz • 0
0
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0
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1.1k
views
Gviz - Fixed width of title panel on left
Gviz
4.6 years ago rheery • 0
0
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0
replies
1.1k
views
Gviz: set colors for UTRs
plot color Gviz utr
4.7 years ago ginlucks • 0
0
votes
3
replies
1.5k
views
Gviz featureAnnotation disappear when zooming in
Gviz
updated 4.7 years ago by 68k • written 4.7 years ago by • 0
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0
replies
1.3k
views
Gviz import lor reads from bam file
Gviz longreads
4.7 years ago ginlucks • 0
0
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1
reply
1.1k
views
two tracks have the same axis
plot Gviz
5.1 years ago 腾 • 0
0
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2
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1.5k
views
Can we align all the names of the transcripts (GeneRegionTrack) in the plotTracks() output?
Annotation Alignment Gviz
5.1 years ago Vaibhav • 0
0
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2
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1.5k
views
Gviz vertical text labels
Gviz
updated 5.1 years ago by 68k • written 5.1 years ago by ▴ 90
0
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1
reply
1.4k
views
Gviz, keeping strand information while zooming in
Gviz strand
5.2 years ago svenbioinf • 0
2
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2
replies
1.9k
views
Can't display protein domain data from UCSC table unipDomain using Gviz
Gviz protein visualization UcscTrack protein domains
updated 5.3 years ago by 68k • written 5.3 years ago by ▴ 10
0
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1
reply
1.4k
views
Gviz package for plotting DMRs
Gviz DMRs
updated 5.4 years ago by ▴ 750 • written 5.4 years ago by • 0
0
votes
3
replies
3.1k
views
Is it possible to group multiple bigWig files in Gviz DataTrack?
Gviz
5.4 years ago roman.hillje • 0
1
vote
3
replies
1.3k
views
Highlight uniq transcripts in Gviz
Gviz
updated 5.5 years ago by ★ 4.0k • written 5.5 years ago by • 0
0
votes
2
replies
1.5k
views
Gviz AlignmentsTrack: how to prevent reads from overlapping each other
Gviz
updated 5.6 years ago by ▴ 750 • written 5.6 years ago by • 0
0
votes
2
replies
1.6k
views
Error in value[[3L]](cond) : 'end' must be <= 536870912 with Gviz::plotTracks
Gviz plotTracks
updated 5.8 years ago by ▴ 750 • written 5.8 years ago by • 0
0
votes
4
replies
1.7k
views
col.interactions.types for gviz InteractionTrack from the GenomicInteractions
GenomicInteractions gviz
updated 5.8 years ago by ▴ 140 • written 5.8 years ago by ▴ 30
0
votes
1
reply
1.4k
views
How to modify centromere depiction in Gviz IdeogramTrack?
Gviz
updated 5.8 years ago by ▴ 750 • written 6.4 years ago by ▴ 10
337 results • Page 1 of 7
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Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Answer: PTM analysis in LIMPA by Gordon Smyth 53k
For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…
Answer: problem reading bam files into nucleR by James W. MacDonald 68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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