Showing : Gviz • reset
0
votes
0
replies
318
views
Simple confidence intervall Gviz
Gviz
10 months ago William • 0
0
votes
1
reply
1.8k
views
How to increase font for gene name and increase arrow size for GVIZ's ( UcscTrack function ) track?
DMRcate Gviz
updated 12 months ago by • 0 • written 4.1 years ago by ▴ 60
0
votes
1
reply
731
views
Setting ylims in bam coverage plot and assigning compound sashimi numbers to overlay plots
Coverage Gviz sashimi
updated 8 months ago by • 0 • written 15 months ago by • 0
0
votes
3
replies
1.9k
views
How to plot gene names in Gviz plotTracks and get the ideogram track to work (US-based)?
gviz Saccharomyces_cerevisiae Gviz ideogram
updated 18 months ago by • 0 • written 2.3 years ago by • 0
0
votes
3
replies
1.0k
views
Gviz and custom database
Gviz
updated 19 months ago by 68k • written 19 months ago by • 0
1
vote
2
replies
2.4k
views
DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, parametric = FALSE, : NA/NaN/Inf in foreign function call (arg 1)"
DMRcate Gviz
updated 21 months ago by ▴ 230 • written 2.9 years ago by ▴ 10
0
votes
1
reply
749
views
GC content track on GVIZ
Gviz
updated 23 months ago by 68k • written 23 months ago by • 0
1
vote
3
replies
2.7k
views
Error in the UcscTrack() in package "Gviz"
DMR Methylation R Gviz
updated 2.2 years ago by ▴ 750 • written 4.7 years ago by • 0
0
votes
0
replies
897
views
Gviz::GeneRegionTrack error with standard TxDb: "adding seqlevels to a TxDb object is not supported"
Gviz
2.2 years ago dbsgtk • 0
1
vote
0
replies
1.1k
views
Gviz : UcscTrack
rtracklayer UCSC Gviz
2.2 years ago yujin ▴ 10
1
vote
3
replies
1.2k
views
Error in Gviz (actually, rtracklayer) | IdeogramTrack
rtracklayer Gviz
updated 2.2 years ago by 16k • written 2.2 years ago by ▴ 10
0
votes
5
replies
3.0k
views
Gviz: UcscTrack and "GC Percent" information
Gviz coMET
3.1 years ago • updated 2.3 years ago Daniel E. Weeks ▴ 30
0
votes
2
replies
1.0k
views
how to add annotation on individual track
Gviz
updated 2.7 years ago by ▴ 750 • written 2.7 years ago by ▴ 60
0
votes
0
replies
790
views
Coloring reads in AlignmentsTrack based on mapq
Gviz
2.9 years ago Vinicius Henrique da Silva ▴ 40
0
votes
0
replies
1.3k
views
DMR.plot "Error: Too many stacks to draw"
DMRcate Gviz GV
2.9 years ago gilliangoobie • 0
0
votes
2
replies
2.0k
views
Gviz: Filtering AlignmentsTrack by read names
Gvi Gviz
updated 3.5 years ago by 68k • written 3.5 years ago by • 0
0
votes
1
reply
1.7k
views
GViz plot coverage for multiple chromosome and multiple samples using BAM files and save them as a single pdf report
Gviz
3.5 years ago rohitsatyam102 ▴ 20
4
votes
1
reply
2.6k
views
How to add gene symbol in GeneRegionTrack in Gviz
Gviz
updated 3.6 years ago by 68k • written 3.6 years ago by • 0
1
vote
3
replies
3.0k
views
GVIZ giving error with loading hg38 genome
R Gviz
3.7 years ago RUser743 • 0
1
vote
2
replies
2.3k
views
Gviz and datatracks
Gviz
updated 3.9 years ago by • 0 • written 4.0 years ago by ▴ 670
0
votes
0
replies
910
views
Color of 2nd exon
GViz
4.0 years ago underscore • 0
1
vote
1
reply
1.4k
views
Gviz DataTrack data transformation on the fly
aggregation Gviz DataTrack
updated 4.0 years ago by ▴ 750 • written 4.0 years ago by ▴ 10
0
votes
0
replies
1.1k
views
Modify y axis or add second y axis in Gviz
OverlayTrack Gviz
4.0 years ago Robert ▴ 10
4
votes
4
replies
3.2k
views
Gviz: ylim of the AlignmentsTrack
gviz gviz-package
updated 4.1 years ago by ▴ 120 • written 7.3 years ago by ▴ 10
0
votes
0
replies
899
views
Y axis Data Track GVIZ
GVIZ
4.2 years ago • updated 4.1 years ago rbenel ▴ 50
1
vote
1
reply
2.2k
views
GVIZ on R not loading mm10 from UCSC
Gviz
4.3 years ago RUser743 • 0
0
votes
3
replies
1.6k
views
Details AnnotationTrack swap densityplot and connectors
Gviz
4.3 years ago Hartorthereal • 0
1
vote
3
replies
2.0k
views
Gradient dotplot
Gviz
4.3 years ago sophieagger • 0
0
votes
0
replies
1.2k
views
One read per line and other ordering of reads in Gviz
Gviz
4.4 years ago pillailab1 • 0
0
votes
4
replies
1.9k
views
window parameter in DataTrack function with a single sample
Gviz
4.4 years ago • updated 4.2 years ago rbenel ▴ 50
0
votes
1
reply
1.6k
views
Gviz: change position of transcriptAnnotation
Gviz
updated 4.4 years ago by 68k • written 4.4 years ago by ▴ 10
0
votes
4
replies
2.1k
views
AlignmentsTrack empty plot
Coverage RNASeq plot Gviz
updated 3.0 years ago by 68k • written 4.5 years ago by • 0
1
vote
3
replies
1.8k
views
Can't produce a generegiontrack from my txdb anymore
gviz GenomicFeatures
4.5 years ago A.J. ▴ 20
0
votes
0
replies
1.4k
views
Combining dataTracks in Gviz by averaging or subtraction
Gviz
4.7 years ago gdeniz • 0
0
votes
0
replies
1.1k
views
Gviz - Fixed width of title panel on left
Gviz
4.7 years ago rheery • 0
0
votes
0
replies
1.1k
views
Gviz: set colors for UTRs
plot color Gviz utr
4.8 years ago ginlucks • 0
0
votes
3
replies
1.6k
views
Gviz featureAnnotation disappear when zooming in
Gviz
updated 4.8 years ago by 68k • written 4.8 years ago by • 0
0
votes
0
replies
1.4k
views
Gviz import lor reads from bam file
Gviz longreads
4.8 years ago ginlucks • 0
0
votes
1
reply
1.2k
views
two tracks have the same axis
plot Gviz
5.2 years ago 腾 • 0
0
votes
2
replies
1.5k
views
Can we align all the names of the transcripts (GeneRegionTrack) in the plotTracks() output?
Annotation Alignment Gviz
5.2 years ago Vaibhav • 0
0
votes
2
replies
1.6k
views
Gviz vertical text labels
Gviz
updated 5.2 years ago by 68k • written 5.2 years ago by ▴ 90
0
votes
1
reply
1.4k
views
Gviz, keeping strand information while zooming in
Gviz strand
5.3 years ago svenbioinf • 0
2
votes
2
replies
1.9k
views
Can't display protein domain data from UCSC table unipDomain using Gviz
Gviz protein visualization UcscTrack protein domains
updated 5.4 years ago by 68k • written 5.4 years ago by ▴ 10
0
votes
1
reply
1.5k
views
Gviz package for plotting DMRs
Gviz DMRs
updated 5.5 years ago by ▴ 750 • written 5.5 years ago by • 0
0
votes
3
replies
3.2k
views
Is it possible to group multiple bigWig files in Gviz DataTrack?
Gviz
5.5 years ago roman.hillje • 0
1
vote
3
replies
1.3k
views
Highlight uniq transcripts in Gviz
Gviz
updated 5.6 years ago by ★ 4.0k • written 5.6 years ago by • 0
0
votes
2
replies
1.6k
views
Gviz AlignmentsTrack: how to prevent reads from overlapping each other
Gviz
updated 5.7 years ago by ▴ 750 • written 5.7 years ago by • 0
0
votes
2
replies
1.6k
views
Error in value[[3L]](cond) : 'end' must be <= 536870912 with Gviz::plotTracks
Gviz plotTracks
updated 5.9 years ago by ▴ 750 • written 5.9 years ago by • 0
0
votes
4
replies
1.8k
views
col.interactions.types for gviz InteractionTrack from the GenomicInteractions
GenomicInteractions gviz
updated 5.9 years ago by ▴ 140 • written 5.9 years ago by ▴ 30
0
votes
1
reply
1.4k
views
How to modify centromere depiction in Gviz IdeogramTrack?
Gviz
updated 5.9 years ago by ▴ 750 • written 6.5 years ago by ▴ 10
337 results • Page 1 of 7
Recent ...
Replies
Comment: Are individual-mouse-based statistics possible in CellChat? by TikTsossakaas33ocissalpc • 0
Questions about comparing groups and statistical significance highlight how data driven thinking matters across fields. In online mobile ga…
Comment: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by ja569116 • 0
Hi @atpoint Thanks for the information. Could you please expand on when to use adjusted p-values vs nominal p-values. My understanding was …
Answer: limpa analysis advice by Gordon Smyth 53k
It is actually very hard to estimate the DPC from observed data, because the curve is function of unobserved intensities rather than a func…
Answer: When to use edgeR or limma by Gordon Smyth 53k
The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
I updated the above answer today.
Votes
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
Awards • All
Popular Question to Lluís Revilla Sancho ▴ 760
Popular Question to nromerov • 0
Popular Question to Thomas Girke ★ 1.7k
Teacher to Gordon Smyth 53k
Popular Question to Stephanie M. Gogarten ▴ 890
Locations • All
France, 1 hour ago
Bangladesh, 1 hour ago
Barcelona, Spain, 2 hours ago
Vietnam, 2 hours ago
The city by the bay, 2 hours ago
Traffic: 1136 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6