Showing : Gviz • reset
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GC content track on GVIZ
Gviz
updated 12 weeks ago by 65k • written 12 weeks ago by • 0
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0
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345
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Gviz::GeneRegionTrack error with standard TxDb: "adding seqlevels to a TxDb object is not supported"
Gviz
6 months ago dbsgtk • 0
1
vote
0
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437
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Gviz : UcscTrack
rtracklayer UCSC Gviz
6 months ago yujin ▴ 10
1
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3
replies
600
views
Error in Gviz (actually, rtracklayer) | IdeogramTrack
rtracklayer Gviz
updated 6 months ago by 16k • written 6 months ago by ▴ 10
0
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3
replies
752
views
How to plot gene names in Gviz plotTracks and get the ideogram track to work (US-based)?
gviz Saccharomyces_cerevisiae Gviz ideogram
updated 7 months ago by ▴ 730 • written 7 months ago by • 0
0
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2
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539
views
how to add annotation on individual track
Gviz
updated 11 months ago by ▴ 730 • written 11 months ago by ▴ 50
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0
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392
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Coloring reads in AlignmentsTrack based on mapq
Gviz
14 months ago Vinicius Henrique da Silva ▴ 40
1
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2
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990
views
DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, parametric = FALSE, : NA/NaN/Inf in foreign function call (arg 1)"
DMRcate Gviz
updated 10 days ago by ▴ 180 • written 14 months ago by ▴ 10
0
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0
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631
views
DMR.plot "Error: Too many stacks to draw"
DMRcate Gviz GV
14 months ago gilliangoobie • 0
0
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5
replies
1.7k
views
Gviz: UcscTrack and "GC Percent" information
Gviz coMET
17 months ago • updated 7 months ago Daniel E. Weeks ▴ 30
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2
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1.2k
views
Gviz: Filtering AlignmentsTrack by read names
Gvi Gviz
updated 21 months ago by 65k • written 21 months ago by • 0
0
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1
reply
968
views
GViz plot coverage for multiple chromosome and multiple samples using BAM files and save them as a single pdf report
Gviz
22 months ago • updated 21 months ago rohitsatyam102 ▴ 20
2
votes
1
reply
1.3k
views
How to add gene symbol in GeneRegionTrack in Gviz
Gviz
updated 23 months ago by 65k • written 23 months ago by • 0
1
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3
replies
1.8k
views
GVIZ giving error with loading hg38 genome
R Gviz
2.0 years ago RUser743 • 0
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0
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540
views
Color of 2nd exon
GViz
2.3 years ago underscore • 0
1
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2
replies
1.4k
views
Gviz and datatracks
Gviz
updated 2.2 years ago by • 0 • written 2.3 years ago by ▴ 670
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0
replies
612
views
Modify y axis or add second y axis in Gviz
OverlayTrack Gviz
2.3 years ago Robert ▴ 10
1
vote
1
reply
840
views
Gviz DataTrack data transformation on the fly
aggregation Gviz DataTrack
updated 2.3 years ago by ▴ 730 • written 2.3 years ago by ▴ 10
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0
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832
views
How to increase font for gene name and increase arrow size for GVIZ's ( UcscTrack function ) track?
DMRcate Gviz
2.4 years ago Ahdee ▴ 50
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0
replies
597
views
Y axis Data Track GVIZ
GVIZ
2.5 years ago • updated 2.4 years ago rbenel ▴ 40
1
vote
1
reply
1.5k
views
GVIZ on R not loading mm10 from UCSC
Gviz
2.6 years ago RUser743 • 0
0
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3
replies
924
views
Details AnnotationTrack swap densityplot and connectors
Gviz
2.6 years ago Hartorthereal • 0
1
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3
replies
1.3k
views
Gradient dotplot
Gviz
2.6 years ago sophieagger • 0
0
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0
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846
views
One read per line and other ordering of reads in Gviz
Gviz
2.7 years ago pillailab1 • 0
0
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4
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1.1k
views
window parameter in DataTrack function with a single sample
Gviz
2.7 years ago • updated 2.5 years ago rbenel ▴ 40
0
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1
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1.0k
views
Gviz: change position of transcriptAnnotation
Gviz
updated 2.7 years ago by 65k • written 2.7 years ago by ▴ 10
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4
replies
1.2k
views
AlignmentsTrack empty plot
Coverage RNASeq plot Gviz
updated 15 months ago by 65k • written 2.8 years ago by • 0
1
vote
3
replies
1.1k
views
Can't produce a generegiontrack from my txdb anymore
gviz GenomicFeatures
2.8 years ago • updated 2.7 years ago A.J. ▴ 20
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0
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856
views
Combining dataTracks in Gviz by averaging or subtraction
Gviz
3.0 years ago gdeniz • 0
0
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0
replies
762
views
Gviz - Fixed width of title panel on left
Gviz
3.0 years ago rheery • 0
1
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3
replies
1.4k
views
Error in the UcscTrack() in package "Gviz"
DMR Methylation R Gviz
updated 5 months ago by ▴ 730 • written 3.0 years ago by • 0
0
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0
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678
views
Gviz: set colors for UTRs
plot color Gviz utr
3.1 years ago ginlucks • 0
0
votes
3
replies
1.0k
views
Gviz featureAnnotation disappear when zooming in
Gviz
updated 3.1 years ago by 65k • written 3.1 years ago by • 0
0
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0
replies
981
views
Gviz import lor reads from bam file
Gviz longreads
3.1 years ago ginlucks • 0
0
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1
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752
views
two tracks have the same axis
plot Gviz
3.4 years ago 腾 • 0
0
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2
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995
views
Can we align all the names of the transcripts (GeneRegionTrack) in the plotTracks() output?
Annotation Alignment Gviz
3.5 years ago Vaibhav • 0
0
votes
2
replies
1.0k
views
Gviz vertical text labels
Gviz
updated 3.5 years ago by 65k • written 3.5 years ago by ▴ 90
0
votes
1
reply
882
views
Gviz, keeping strand information while zooming in
Gviz strand
3.6 years ago svenbioinf • 0
2
votes
2
replies
1.2k
views
Can't display protein domain data from UCSC table unipDomain using Gviz
Gviz protein visualization UcscTrack protein domains
updated 3.7 years ago by 65k • written 3.7 years ago by ▴ 10
0
votes
1
reply
898
views
Gviz package for plotting DMRs
Gviz DMRs
updated 3.8 years ago by ▴ 730 • written 3.8 years ago by • 0
0
votes
3
replies
2.1k
views
Is it possible to group multiple bigWig files in Gviz DataTrack?
Gviz
3.8 years ago roman.hillje • 0
1
vote
3
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766
views
Highlight uniq transcripts in Gviz
Gviz
updated 3.9 years ago by ★ 3.9k • written 3.9 years ago by • 0
0
votes
2
replies
1.0k
views
Gviz AlignmentsTrack: how to prevent reads from overlapping each other
Gviz
updated 4.0 years ago by ▴ 730 • written 4.0 years ago by • 0
0
votes
2
replies
994
views
Error in value[[3L]](cond) : 'end' must be <= 536870912 with Gviz::plotTracks
Gviz plotTracks
updated 4.2 years ago by ▴ 730 • written 4.2 years ago by • 0
0
votes
4
replies
1.1k
views
col.interactions.types for gviz InteractionTrack from the GenomicInteractions
GenomicInteractions gviz
updated 4.2 years ago by ▴ 140 • written 4.2 years ago by ▴ 30
1
vote
5
replies
1.0k
views
Plotting DMRs (Differentially Methylated Regions) using Gviz package in R
Gviz
updated 4.2 years ago by 65k • written 4.2 years ago by ▴ 10
0
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2
replies
844
views
BioMart webservice returned an invalid result
gviz biomart
4.3 years ago adrian86 • 0
0
votes
2
replies
870
views
I am wondering whether Gviz can support a plot like ggridges
Gviz
4.5 years ago Guandong Shang ▴ 40
0
votes
0
replies
652
views
Gviz coverage and sashimi not from BAM file
Gviz
4.5 years ago mario.keller.1988 ▴ 20
1
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1
reply
1.1k
views
Gviz UCSC tracks not visible
Gviz R UCSC Tracks genome locusplot
updated 4.5 years ago by ▴ 730 • written 4.5 years ago by • 0
50 results • Page 1 of 1
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Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0
Thank you Tim, this is a great help in getting me started!
Comment: Too many significant genes when integrating gtex and tcga by Michael Love 41k
Yes, this was one of the aspects we highlighted in the 2014 paper, and it's also in the workflow. Check these places first. Also take a st…
Answer: Too many significant genes when integrating gtex and tcga by James W. MacDonald 65k
See `?results`, in particular the lfcThreshold argument.
Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k
You already ran a temporal assay. Now you can compare each time point to the baseline. The interaction term is only applicable if you have…
Votes
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
stuck on unimplemented type 'list' in 'EncodeElement'
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