Showing : Heatmaps • reset
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DESeq2 Heatmap
heatmaps
updated 10 weeks ago by ★ 1.4k • written 10 weeks ago by • 0
0
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3
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820
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Label specific rows in pheatmap
heatmaps pheatmap
updated 5 months ago by 68k • written 5 months ago by ▴ 50
1
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5
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1.6k
views
Heatmap from the output of GSEA clusterProfiler?
clusterProfiler heatmaps
written 7 months ago by • 0
2
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1
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1.0k
views
DESeq2 is it OK to scale transformed data in order to plot heatmaps?
DESeq2 heatmaps
updated 7 months ago by ★ 4.8k • written 7 months ago by • 0
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301
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Error in drawHeatmap function
GeneOverlap heatmaps
9 months ago Johanna • 0
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2
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945
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Cluster columns in Pheatmap
geneexp pheatmap heatmaps cluster
updated 10 months ago by 68k • written 10 months ago by • 0
0
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1
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2.0k
views
Error when trying to create a heatmap with DESeq2
Heatmap RNA-seqanalysis heatmaps DESeq2
updated 17 months ago by ▴ 780 • written 17 months ago by • 0
0
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1
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2.2k
views
edgeR heatmap construction and interpretation
heatmaps
updated 17 months ago by 52k • written 17 months ago by • 0
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3
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1.1k
views
Installing Gpart
gpart heat heatmaps
updated 17 months ago by 68k • written 17 months ago by • 0
0
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2
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1.1k
views
Drawing a heatmap with only limited genes
heatmaps
updated 21 months ago by • 0 • written 21 months ago by • 0
1
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1
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763
views
Add 'ColSideColors' using 'heatmap.2' function
ColSideColors heatmaps heatmap.2
updated 24 months ago by ▴ 80 • written 2.0 years ago by ▴ 10
0
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1
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972
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Heatmap of two conditions from the normalized gene count data
GeneExpression heatmaps
updated 2.1 years ago by ★ 4.8k • written 2.1 years ago by • 0
0
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2
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1.5k
views
How to use the plotExprHeatmap function to draw heat maps according to groups
grou heatmaps CyTOFpower cytofWorkflow
2.1 years ago shuangshuang • 0
0
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0
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1.3k
views
WGCNA Heatmap and Export to Cytoscape Not Working
Cytoscape Heatmap heatmaps WGCNA
2.1 years ago gianni.drm • 0
0
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1
reply
1.1k
views
struggling to create a heatmap
DESeq2 heatmaps
updated 2.1 years ago by ★ 4.8k • written 2.1 years ago by ▴ 10
2
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3
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1.7k
views
How can I draw a barplot of complexheatmap according 'Tumor Type'
heatma heatmaps ComplexHeatmap
updated 2.2 years ago by ▴ 40 • written 2.2 years ago by ▴ 10
2
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2
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1.0k
views
[DESeq2] There is no difference in expression in my heatmap
DESeq2 heatmaps
2.2 years ago Sooni ▴ 10
4
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5
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5.6k
views
How to identify top most variable genes from log2 normalized data?
supervised edgeR variance RNASeq heatmaps
updated 2.1 years ago by 52k • written 2.3 years ago by ▴ 10
2
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5
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2.3k
views
ComplexHeatmap - z-score color coding failed
heatmaps ComplexHeatmap
2.3 years ago Katharina • 0
0
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1
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3.8k
views
Heatmap with result DESeq analysis
DESeq2 results Heatmaps plots
updated 2.4 years ago by 43k • written 2.5 years ago by • 0
0
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3
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1.9k
views
Generate Heatmap from Gene Names after DESEQ2
DESeq2 DESEQ2 tximeta SummarizedExperiment heatmaps
updated 2.5 years ago by 68k • written 2.5 years ago by • 0
0
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1
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2.2k
views
Complex Heatmap - correlation matrix - how to have exact same annotation with same colors for rows and columns?
R heatmaps ComplexHeatmap Heatma
updated 2.6 years ago by ▴ 290 • written 2.6 years ago by • 0
1
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1
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1.4k
views
How fix lines of dendrogram that overlap in the column portion of a heatmap?
heat heatmaps
updated 2.7 years ago by 68k • written 2.8 years ago by • 0
0
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2
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6.9k
views
Scaling for p.heatmap
heatmaps pheatmap scaling
2.8 years ago Bhavana • 0
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3
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1.8k
views
Persisting error in making a heatmap
heatmaps gplots
2.8 years ago beslinail • 0
1
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1
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1.1k
views
Method for generating heatmap of overlapping DEGs?
heatm heatmaps
updated 2.9 years ago by 68k • written 2.9 years ago by • 0
0
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1
reply
1.5k
views
Help me do a gene enrichment analysis
DESeq2 topGO heatmaps
updated 3.6 years ago by ▴ 40 • written 3.6 years ago by • 0
0
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2
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2.1k
views
PCA and heatmaps: most variable genes selection
DESeq2 ExpressionData heatmaps pca
3.8 years ago Clara ▴ 10
0
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1
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3.2k
views
Can you colour dendrogram branch clusters in pheatmap?
R heatmaps pheatmap
updated 4.1 years ago by ★ 4.0k • written 4.1 years ago by ▴ 10
1
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1
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1.1k
views
PCA rand heatmap of raw data
DESeq2 DiffSeq PrincipalComponent rlog heatmaps
updated 4.1 years ago by 43k • written 4.1 years ago by ▴ 30
4
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5
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1.8k
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DEseq2 results
heatmaps DEGs PCA
updated 4.1 years ago by ★ 4.0k • written 4.1 years ago by • 0
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0
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919
views
How to generate input file for Bioconductor package heatmaps
heatmaps input file
updated 6.1 years ago by 68k • written 6.1 years ago by ▴ 10
32 results • Page 1 of 1
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Comment: Package developing and interoperation with Bioconductor by slizchap • 0
Thank you so much for your answer. This was very useful, I will optimize my functions so they can handle SE objects.
Comment: Package developing and interoperation with Bioconductor by slizchap • 0
Thank you so much for your answer, very useful!
Comment: Error in H5Dclose(h5dataset) when trying to read in kallisto h5 files by Mike Smith ★ 6.6k
Tricky to try and debug this without some example files to work with. Can you provide the output of `traceback()` called immediately after…
Answer: Mismatch between Illumina Mouse Methylation BeadChip annotation and genome brows by James W. MacDonald 68k
The annotation data that is provided for this array is simply a repackaging of data that we get from Illumina, so any apparent inconsistenc…
Answer: Package developing and interoperation with Bioconductor by James W. MacDonald 68k
Ideally you would have S4 methods that dispatch on the incoming data structure, so people could call your main function using a `data.frame…
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Comment: ComBat with repeated measures
Answer: Package developing and interoperation with Bioconductor
Answer: CpGs with genomic positions greater than the chromosome size in EPICv2?
Answer: Explannation for ROAST results
A: How DiffBind run PCA based on peak data?
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