Showing : Heatmaps • reset
0
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3
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349
views
Label specific rows in pheatmap
heatmaps pheatmap
updated 25 days ago by 67k • written 25 days ago by ▴ 50
1
vote
5
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891
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Heatmap from the output of GSEA clusterProfiler?
clusterProfiler heatmaps
written 12 weeks ago by • 0
2
votes
1
reply
426
views
DESeq2 is it OK to scale transformed data in order to plot heatmaps?
DESeq2 heatmaps
updated 3 months ago by ★ 4.5k • written 3 months ago by • 0
0
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0
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214
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Error in drawHeatmap function
GeneOverlap heatmaps
5 months ago Johanna • 0
0
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2
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596
views
Cluster columns in Pheatmap
geneexp pheatmap heatmaps cluster
updated 5 months ago by 67k • written 5 months ago by • 0
0
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1
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1.4k
views
Error when trying to create a heatmap with DESeq2
Heatmap RNA-seqanalysis heatmaps DESeq2
updated 12 months ago by ▴ 780 • written 12 months ago by • 0
0
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1
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1.6k
views
edgeR heatmap construction and interpretation
heatmaps
updated 13 months ago by 51k • written 13 months ago by • 0
0
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3
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915
views
Installing Gpart
gpart heat heatmaps
updated 13 months ago by 67k • written 13 months ago by • 0
0
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2
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923
views
Drawing a heatmap with only limited genes
heatmaps
updated 16 months ago by • 0 • written 16 months ago by • 0
1
vote
1
reply
678
views
Add 'ColSideColors' using 'heatmap.2' function
ColSideColors heatmaps heatmap.2
updated 19 months ago by ▴ 80 • written 20 months ago by ▴ 10
0
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1
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847
views
Heatmap of two conditions from the normalized gene count data
GeneExpression heatmaps
updated 20 months ago by ★ 4.5k • written 20 months ago by • 0
0
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2
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1.2k
views
How to use the plotExprHeatmap function to draw heat maps according to groups
grou heatmaps CyTOFpower cytofWorkflow
20 months ago shuangshuang • 0
0
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0
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1.1k
views
WGCNA Heatmap and Export to Cytoscape Not Working
Cytoscape Heatmap heatmaps WGCNA
21 months ago gianni.drm • 0
0
votes
1
reply
845
views
struggling to create a heatmap
DESeq2 heatmaps
updated 21 months ago by ★ 4.5k • written 21 months ago by ▴ 10
2
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3
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1.4k
views
How can I draw a barplot of complexheatmap according 'Tumor Type'
heatma heatmaps ComplexHeatmap
updated 21 months ago by ▴ 40 • written 21 months ago by ▴ 10
2
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2
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850
views
[DESeq2] There is no difference in expression in my heatmap
DESeq2 heatmaps
21 months ago Sooni ▴ 10
4
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5
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4.6k
views
How to identify top most variable genes from log2 normalized data?
supervised edgeR variance RNASeq heatmaps
updated 21 months ago by 51k • written 22 months ago by ▴ 10
2
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5
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2.0k
views
ComplexHeatmap - z-score color coding failed
heatmaps ComplexHeatmap
23 months ago Katharina • 0
0
votes
1
reply
3.1k
views
Heatmap with result DESeq analysis
DESeq2 results Heatmaps plots
updated 2.1 years ago by 42k • written 2.1 years ago by • 0
0
votes
3
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1.6k
views
Generate Heatmap from Gene Names after DESEQ2
DESeq2 DESEQ2 tximeta SummarizedExperiment heatmaps
updated 2.2 years ago by 67k • written 2.2 years ago by • 0
0
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1
reply
1.9k
views
Complex Heatmap - correlation matrix - how to have exact same annotation with same colors for rows and columns?
R heatmaps ComplexHeatmap Heatma
updated 2.2 years ago by ▴ 290 • written 2.2 years ago by • 0
1
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1
reply
1.3k
views
How fix lines of dendrogram that overlap in the column portion of a heatmap?
heat heatmaps
updated 2.4 years ago by 67k • written 2.4 years ago by • 0
0
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2
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5.2k
views
Scaling for p.heatmap
heatmaps pheatmap scaling
2.4 years ago Bhavana • 0
0
votes
3
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1.5k
views
Persisting error in making a heatmap
heatmaps gplots
2.4 years ago beslinail • 0
1
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1
reply
962
views
Method for generating heatmap of overlapping DEGs?
heatm heatmaps
updated 2.6 years ago by 67k • written 2.6 years ago by • 0
0
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1
reply
1.3k
views
Help me do a gene enrichment analysis
DESeq2 topGO heatmaps
updated 3.2 years ago by ▴ 40 • written 3.2 years ago by • 0
0
votes
2
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2.0k
views
PCA and heatmaps: most variable genes selection
DESeq2 ExpressionData heatmaps pca
3.4 years ago Clara ▴ 10
0
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1
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2.9k
views
Can you colour dendrogram branch clusters in pheatmap?
R heatmaps pheatmap
updated 3.7 years ago by ★ 4.0k • written 3.7 years ago by ▴ 10
1
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1
reply
1.0k
views
PCA rand heatmap of raw data
DESeq2 DiffSeq PrincipalComponent rlog heatmaps
updated 3.7 years ago by 42k • written 3.7 years ago by ▴ 30
4
votes
5
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1.6k
views
DEseq2 results
heatmaps DEGs PCA
updated 3.7 years ago by ★ 4.0k • written 3.7 years ago by • 0
0
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0
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857
views
How to generate input file for Bioconductor package heatmaps
heatmaps input file
updated 5.7 years ago by 67k • written 5.7 years ago by ▴ 10
31 results • Page 1 of 1
Recent ...
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Answer: Is it possible to parallelise saveHDF5SummarizedExperiment by Hervé Pagès 16k
Hi Stefano, Unfortunately HDF5 doesn't support concurrent writing so parallelising is not an option. A few things that maybe could help: …
Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db? by James W. MacDonald 67k
It's a simple two-liner in [getsrc.sh][1] ``` awk -F'\t' 'BEGIN {OFS=FS} {if($3 != $11 && $11 != "-") $3 = $11; print $0}' gene_info > tmp…
Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db? by Guido Hooiveld ★ 4.1k
Thanks for changing this! Just to confirm I understood it correctly: the `Symbol` will (still) be used, and will be replaced by `Symbol fro…
Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db? by James W. MacDonald 67k
OK, there are 157 MT genes in maybe 6 species for which the symbols are not correct, and I added code to swap the 'Symbol from nomenclature…
Comment: Tximport with RSEM error by Michael Love 42k
Would you post a new issue with example code and maybe what the files look like?
Votes
Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db?
Answer: Supercells with Basilisk fails for dtype('float64') to dtype('int64') conversion
A: GOseq analysis with only upregulated or downregulated genes
A: GOseq analysis with only upregulated or downregulated genes
Answer: Properly constructing a hypergeometric test
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