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Heatmaps
•
reset
0
votes
2
replies
341
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DESeq2 Heatmap
heatmaps
updated 5 weeks ago by
swbarnes2
★ 1.4k • written 5 weeks ago by
pm_25
• 0
0
votes
3
replies
631
views
Label specific rows in pheatmap
heatmaps
pheatmap
updated 4 months ago by
James W. MacDonald
68k • written 4 months ago by
Dina
▴ 50
1
vote
5
replies
1.4k
views
Heatmap from the output of GSEA clusterProfiler?
clusterProfiler
heatmaps
written 6 months ago by
Claudio
• 0
2
votes
1
reply
847
views
DESeq2 is it OK to scale transformed data in order to plot heatmaps?
DESeq2
heatmaps
updated 6 months ago by
ATpoint
★ 4.7k • written 6 months ago by
jeba95
• 0
0
votes
0
replies
278
views
Error in drawHeatmap function
GeneOverlap
heatmaps
8 months ago
Johanna
• 0
0
votes
2
replies
829
views
Cluster columns in Pheatmap
geneexp
pheatmap
heatmaps
cluster
updated 9 months ago by
James W. MacDonald
68k • written 9 months ago by
pehove2385
• 0
0
votes
1
reply
1.9k
views
Error when trying to create a heatmap with DESeq2
Heatmap
RNA-seqanalysis
heatmaps
DESeq2
updated 16 months ago by
Basti
▴ 780 • written 16 months ago by
langziv
• 0
0
votes
1
reply
2.0k
views
edgeR heatmap construction and interpretation
heatmaps
updated 16 months ago by
Gordon Smyth
52k • written 16 months ago by
ulin.1
• 0
0
votes
3
replies
1.0k
views
Installing Gpart
gpart
heat
heatmaps
updated 16 months ago by
James W. MacDonald
68k • written 16 months ago by
Benjamin
• 0
0
votes
2
replies
1.0k
views
Drawing a heatmap with only limited genes
heatmaps
updated 20 months ago by
sayite3688
• 0 • written 20 months ago by
dania.khalid
• 0
1
vote
1
reply
744
views
Add 'ColSideColors' using 'heatmap.2' function
ColSideColors
heatmaps
heatmap.2
updated 22 months ago by
Konstantinos Yeles
▴ 80 • written 23 months ago by
Sooni
▴ 10
0
votes
1
reply
934
views
Heatmap of two conditions from the normalized gene count data
GeneExpression
heatmaps
updated 23 months ago by
ATpoint
★ 4.7k • written 24 months ago by
Amazing570
• 0
0
votes
2
replies
1.4k
views
How to use the plotExprHeatmap function to draw heat maps according to groups
grou
heatmaps
CyTOFpower
cytofWorkflow
24 months ago
shuangshuang
• 0
0
votes
0
replies
1.3k
views
WGCNA Heatmap and Export to Cytoscape Not Working
Cytoscape
Heatmap
heatmaps
WGCNA
2.0 years ago
gianni.drm
• 0
0
votes
1
reply
983
views
struggling to create a heatmap
DESeq2
heatmaps
updated 2.1 years ago by
ATpoint
★ 4.7k • written 2.1 years ago by
m-bihie
▴ 10
2
votes
3
replies
1.6k
views
How can I draw a barplot of complexheatmap according 'Tumor Type'
heatma
heatmaps
ComplexHeatmap
updated 2.1 years ago by
elefth.pavlos
▴ 40 • written 2.1 years ago by
Sooni
▴ 10
2
votes
2
replies
956
views
[DESeq2] There is no difference in expression in my heatmap
DESeq2
heatmaps
2.1 years ago
Sooni
▴ 10
4
votes
5
replies
5.3k
views
How to identify top most variable genes from log2 normalized data?
supervised
edgeR
variance
RNASeq
heatmaps
updated 2.0 years ago by
Gordon Smyth
52k • written 2.2 years ago by
mohammedtoufiq91
▴ 10
2
votes
5
replies
2.2k
views
ComplexHeatmap - z-score color coding failed
heatmaps
ComplexHeatmap
2.2 years ago
Katharina
• 0
0
votes
1
reply
3.6k
views
Heatmap with result DESeq analysis
DESeq2
results
Heatmaps
plots
updated 2.4 years ago by
Michael Love
43k • written 2.4 years ago by
Chiara
• 0
0
votes
3
replies
1.8k
views
Generate Heatmap from Gene Names after DESEQ2
DESeq2
DESEQ2
tximeta
SummarizedExperiment
heatmaps
updated 2.4 years ago by
James W. MacDonald
68k • written 2.4 years ago by
uhlkatie
• 0
0
votes
1
reply
2.1k
views
Complex Heatmap - correlation matrix - how to have exact same annotation with same colors for rows and columns?
R
heatmaps
ComplexHeatmap
Heatma
updated 2.5 years ago by
Zuguang Gu
▴ 290 • written 2.5 years ago by
תום
• 0
1
vote
1
reply
1.4k
views
How fix lines of dendrogram that overlap in the column portion of a heatmap?
heat
heatmaps
updated 2.7 years ago by
James W. MacDonald
68k • written 2.7 years ago by
MauriAndres
• 0
0
votes
2
replies
6.3k
views
Scaling for p.heatmap
heatmaps
pheatmap
scaling
2.7 years ago
Bhavana
• 0
0
votes
3
replies
1.7k
views
Persisting error in making a heatmap
heatmaps
gplots
2.7 years ago
beslinail
• 0
1
vote
1
reply
1.1k
views
Method for generating heatmap of overlapping DEGs?
heatm
heatmaps
updated 2.9 years ago by
James W. MacDonald
68k • written 2.9 years ago by
axe880
• 0
0
votes
1
reply
1.5k
views
Help me do a gene enrichment analysis
DESeq2
topGO
heatmaps
updated 3.5 years ago by
Guandong Shang
▴ 40 • written 3.5 years ago by
anasjamshed1994
• 0
0
votes
2
replies
2.1k
views
PCA and heatmaps: most variable genes selection
DESeq2
ExpressionData
heatmaps
pca
3.7 years ago
Clara
▴ 10
0
votes
1
reply
3.1k
views
Can you colour dendrogram branch clusters in pheatmap?
R
heatmaps
pheatmap
updated 4.0 years ago by
Kevin Blighe
★ 4.0k • written 4.0 years ago by
trichorico
▴ 10
1
vote
1
reply
1.1k
views
PCA rand heatmap of raw data
DESeq2
DiffSeq
PrincipalComponent
rlog
heatmaps
updated 4.0 years ago by
Michael Love
43k • written 4.0 years ago by
Fischer-philipp
▴ 30
4
votes
5
replies
1.7k
views
DEseq2 results
heatmaps
DEGs
PCA
updated 4.0 years ago by
Kevin Blighe
★ 4.0k • written 4.0 years ago by
MOHAMMAD
• 0
0
votes
0
replies
903
views
How to generate input file for Bioconductor package heatmaps
heatmaps
input file
updated 6.0 years ago by
James W. MacDonald
68k • written 6.0 years ago by
bony.dekumar
▴ 10
32 results • Page
1 of 1
Recent ...
Replies
Answer: cameraPR() non directional test
by
Gordon Smyth
52k
Yes, you can still do non-directional tests using cameraPR(), but it's not quite as easy as it was using the original camera() function as …
Answer: WGCNA with paired samples
by
Ivo
• 0
You can use batch correction on the person ID and then continue WGCNA as usual using the corrected matrix. You can use e.g. sva::ComBat or …
Answer: Plot title for PCA in DESeq2
by
ATpoint
★ 4.7k
The function uses ggplot2, so you need `+ ggtitle('title')`. Please take a ggplot2 tutorial for details.
Comment: DESeq2 It is correct to use interaction term for patient variability?
by
Bradley
• 0
I apologize, but I am still perplexed. I need to know the exact type of replication. Do we have many samples taken from the same tumor? You…
Comment: Differential variance analysis - can i use deseq2
by
Michael Love
43k
VST is valid for working with expression data on a variance stabilized scale, so yes. There are many papers that have used VST and then com…
Votes
Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
Answer: normalizatino of dna methylation EPIC data
Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
Suggesting changing the "reply-to" field to the mailing list address.
Answer: UniProt.ws query for single UniRef90 ID takes several minutes
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