Showing : Heatmaps • reset
2
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5
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1.3k
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Heatmap of rnaseq data with z-score scale
heatmaps RNASeq
updated 4 months ago by ▴ 110 • written 4 months ago by ▴ 10
1
vote
5
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1.3k
views
Heatmap of a transformed deseq object with pheatmap
DESeq2 heatmaps
updated 4 months ago by 68k • written 4 months ago by ▴ 10
0
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2
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879
views
DESeq2 Heatmap
heatmaps
updated 8 months ago by ★ 1.4k • written 8 months ago by • 0
0
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3
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1.6k
views
Label specific rows in pheatmap
heatmaps pheatmap
updated 11 months ago by 68k • written 11 months ago by ▴ 50
1
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5
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2.1k
views
Heatmap from the output of GSEA clusterProfiler?
clusterProfiler heatmaps
written 13 months ago by • 0
2
votes
1
reply
1.5k
views
DESeq2 is it OK to scale transformed data in order to plot heatmaps?
DESeq2 heatmaps
updated 14 months ago by ★ 5.0k • written 14 months ago by • 0
0
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0
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440
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Error in drawHeatmap function
GeneOverlap heatmaps
16 months ago Johanna • 0
0
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2
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1.2k
views
Cluster columns in Pheatmap
geneexp pheatmap heatmaps cluster
updated 16 months ago by 68k • written 16 months ago by • 0
0
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1
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2.5k
views
Error when trying to create a heatmap with DESeq2
Heatmap RNA-seqanalysis heatmaps DESeq2
updated 23 months ago by ▴ 780 • written 23 months ago by • 0
0
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1
reply
2.6k
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edgeR heatmap construction and interpretation
heatmaps
updated 24 months ago by 53k • written 24 months ago by • 0
0
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3
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1.3k
views
Installing Gpart
gpart heat heatmaps
updated 24 months ago by 68k • written 24 months ago by • 0
0
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2
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1.2k
views
Drawing a heatmap with only limited genes
heatmaps
updated 2.3 years ago by • 0 • written 2.3 years ago by • 0
1
vote
1
reply
892
views
Add 'ColSideColors' using 'heatmap.2' function
ColSideColors heatmaps heatmap.2
updated 2.5 years ago by ▴ 90 • written 2.6 years ago by ▴ 10
0
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1
reply
1.1k
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Heatmap of two conditions from the normalized gene count data
GeneExpression heatmaps
updated 2.6 years ago by ★ 5.0k • written 2.6 years ago by • 0
0
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2
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1.7k
views
How to use the plotExprHeatmap function to draw heat maps according to groups
grou heatmaps CyTOFpower cytofWorkflow
2.6 years ago shuangshuang • 0
0
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0
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1.5k
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WGCNA Heatmap and Export to Cytoscape Not Working
Cytoscape Heatmap heatmaps WGCNA
2.7 years ago gianni.drm • 0
0
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1
reply
1.3k
views
struggling to create a heatmap
DESeq2 heatmaps
updated 2.7 years ago by ★ 5.0k • written 2.7 years ago by ▴ 10
2
votes
3
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1.9k
views
How can I draw a barplot of complexheatmap according 'Tumor Type'
heatma heatmaps ComplexHeatmap
updated 2.7 years ago by ▴ 40 • written 2.7 years ago by ▴ 10
2
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2
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1.2k
views
[DESeq2] There is no difference in expression in my heatmap
DESeq2 heatmaps
2.7 years ago Sooni ▴ 10
4
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5
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6.3k
views
How to identify top most variable genes from log2 normalized data?
supervised edgeR variance RNASeq heatmaps
updated 2.7 years ago by 53k • written 2.8 years ago by ▴ 10
2
votes
5
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2.7k
views
ComplexHeatmap - z-score color coding failed
heatmaps ComplexHeatmap
2.8 years ago Katharina • 0
0
votes
1
reply
4.2k
views
Heatmap with result DESeq analysis
DESeq2 results Heatmaps plots
updated 3.0 years ago by 43k • written 3.0 years ago by • 0
0
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3
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2.2k
views
Generate Heatmap from Gene Names after DESEQ2
DESeq2 DESEQ2 tximeta SummarizedExperiment heatmaps
updated 3.1 years ago by 68k • written 3.1 years ago by • 0
0
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1
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2.5k
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Complex Heatmap - correlation matrix - how to have exact same annotation with same colors for rows and columns?
R heatmaps ComplexHeatmap Heatma
updated 3.1 years ago by ▴ 290 • written 3.1 years ago by • 0
1
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1
reply
1.6k
views
How fix lines of dendrogram that overlap in the column portion of a heatmap?
heat heatmaps
updated 3.3 years ago by 68k • written 3.3 years ago by • 0
0
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2
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8.2k
views
Scaling for p.heatmap
heatmaps pheatmap scaling
3.3 years ago Bhavana • 0
0
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3
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2.0k
views
Persisting error in making a heatmap
heatmaps gplots
3.3 years ago beslinail • 0
1
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1
reply
1.2k
views
Method for generating heatmap of overlapping DEGs?
heatm heatmaps
updated 3.5 years ago by 68k • written 3.5 years ago by • 0
0
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1
reply
1.6k
views
Help me do a gene enrichment analysis
DESeq2 topGO heatmaps
updated 4.1 years ago by ▴ 40 • written 4.1 years ago by • 0
0
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2
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2.3k
views
PCA and heatmaps: most variable genes selection
DESeq2 ExpressionData heatmaps pca
4.3 years ago Clara ▴ 10
0
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1
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3.5k
views
Can you colour dendrogram branch clusters in pheatmap?
R heatmaps pheatmap
updated 4.6 years ago by ★ 4.0k • written 4.6 years ago by ▴ 10
1
vote
1
reply
1.3k
views
PCA rand heatmap of raw data
DESeq2 DiffSeq PrincipalComponent rlog heatmaps
updated 4.6 years ago by 43k • written 4.6 years ago by ▴ 30
4
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5
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2.0k
views
DEseq2 results
heatmaps DEGs PCA
updated 4.6 years ago by ★ 4.0k • written 4.6 years ago by • 0
0
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0
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1.0k
views
How to generate input file for Bioconductor package heatmaps
heatmaps input file
updated 6.6 years ago by 68k • written 6.6 years ago by ▴ 10
34 results • Page 1 of 1
Recent ...
Replies
Comment: Help with defining groups by Phinney, Brett ▴ 10
I got it working , thank you!!!
Comment: Check removeBatchEffect effectiveness by massimo • 0
I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…
Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0
Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 5.0k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
Votes
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
Answer: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
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