Showing : Heatmaps • reset
2
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5
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1.3k
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Heatmap of rnaseq data with z-score scale
heatmaps RNASeq
updated 6 months ago by ▴ 110 • written 6 months ago by ▴ 10
1
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5
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1.5k
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Heatmap of a transformed deseq object with pheatmap
DESeq2 heatmaps
updated 6 months ago by 68k • written 6 months ago by ▴ 10
0
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2
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941
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DESeq2 Heatmap
heatmaps
updated 10 months ago by ★ 1.4k • written 10 months ago by • 0
0
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3
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1.6k
views
Label specific rows in pheatmap
heatmaps pheatmap
updated 13 months ago by 68k • written 13 months ago by ▴ 50
1
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5
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2.2k
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Heatmap from the output of GSEA clusterProfiler?
clusterProfiler heatmaps
written 15 months ago by • 0
2
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1
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1.6k
views
DESeq2 is it OK to scale transformed data in order to plot heatmaps?
DESeq2 heatmaps
updated 15 months ago by ★ 5.0k • written 15 months ago by • 0
0
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0
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510
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Error in drawHeatmap function
GeneOverlap heatmaps
17 months ago Johanna • 0
0
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2
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1.3k
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Cluster columns in Pheatmap
geneexp pheatmap heatmaps cluster
updated 18 months ago by 68k • written 18 months ago by • 0
0
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1
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2.6k
views
Error when trying to create a heatmap with DESeq2
Heatmap RNA-seqanalysis heatmaps DESeq2
updated 2.1 years ago by ▴ 780 • written 2.1 years ago by • 0
0
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1
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2.7k
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edgeR heatmap construction and interpretation
heatmaps
updated 2.1 years ago by 53k • written 2.1 years ago by • 0
0
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3
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1.5k
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Installing Gpart
gpart heat heatmaps
updated 2.1 years ago by 68k • written 2.1 years ago by • 0
0
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2
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1.3k
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Drawing a heatmap with only limited genes
heatmaps
updated 2.4 years ago by • 0 • written 2.4 years ago by • 0
1
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1
reply
951
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Add 'ColSideColors' using 'heatmap.2' function
ColSideColors heatmaps heatmap.2
updated 2.7 years ago by ▴ 90 • written 2.7 years ago by ▴ 10
0
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1
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1.1k
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Heatmap of two conditions from the normalized gene count data
GeneExpression heatmaps
updated 2.7 years ago by ★ 5.0k • written 2.7 years ago by • 0
0
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2
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1.8k
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How to use the plotExprHeatmap function to draw heat maps according to groups
grou heatmaps CyTOFpower cytofWorkflow
2.7 years ago shuangshuang • 0
0
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0
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1.6k
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WGCNA Heatmap and Export to Cytoscape Not Working
Cytoscape Heatmap heatmaps WGCNA
2.8 years ago gianni.drm • 0
0
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1
reply
1.3k
views
struggling to create a heatmap
DESeq2 heatmaps
updated 2.8 years ago by ★ 5.0k • written 2.8 years ago by ▴ 10
2
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3
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2.0k
views
How can I draw a barplot of complexheatmap according 'Tumor Type'
heatma heatmaps ComplexHeatmap
updated 2.8 years ago by ▴ 40 • written 2.8 years ago by ▴ 10
2
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2
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1.2k
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[DESeq2] There is no difference in expression in my heatmap
DESeq2 heatmaps
2.9 years ago • updated 2.8 years ago Sooni ▴ 10
4
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5
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6.5k
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How to identify top most variable genes from log2 normalized data?
supervised edgeR variance RNASeq heatmaps
updated 2.8 years ago by 53k • written 2.9 years ago by ▴ 10
2
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5
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2.8k
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ComplexHeatmap - z-score color coding failed
heatmaps ComplexHeatmap
3.0 years ago Katharina • 0
0
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1
reply
4.3k
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Heatmap with result DESeq analysis
DESeq2 results Heatmaps plots
updated 3.1 years ago by 43k • written 3.1 years ago by • 0
0
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3
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2.3k
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Generate Heatmap from Gene Names after DESEQ2
DESeq2 DESEQ2 tximeta SummarizedExperiment heatmaps
updated 3.2 years ago by 68k • written 3.2 years ago by • 0
0
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1
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2.5k
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Complex Heatmap - correlation matrix - how to have exact same annotation with same colors for rows and columns?
R heatmaps ComplexHeatmap Heatma
updated 3.2 years ago by ▴ 290 • written 3.3 years ago by • 0
1
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1
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1.6k
views
How fix lines of dendrogram that overlap in the column portion of a heatmap?
heat heatmaps
updated 3.4 years ago by 68k • written 3.4 years ago by • 0
0
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2
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8.4k
views
Scaling for p.heatmap
heatmaps pheatmap scaling
3.4 years ago Bhavana • 0
0
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3
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2.1k
views
Persisting error in making a heatmap
heatmaps gplots
3.4 years ago beslinail • 0
1
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1
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1.3k
views
Method for generating heatmap of overlapping DEGs?
heatm heatmaps
updated 3.6 years ago by 68k • written 3.6 years ago by • 0
0
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1
reply
1.7k
views
Help me do a gene enrichment analysis
DESeq2 topGO heatmaps
updated 4.2 years ago by ▴ 40 • written 4.2 years ago by • 0
0
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2
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2.4k
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PCA and heatmaps: most variable genes selection
DESeq2 ExpressionData heatmaps pca
4.5 years ago Clara ▴ 10
0
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1
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3.5k
views
Can you colour dendrogram branch clusters in pheatmap?
R heatmaps pheatmap
updated 4.7 years ago by ★ 4.0k • written 4.7 years ago by ▴ 10
1
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1
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1.4k
views
PCA rand heatmap of raw data
DESeq2 DiffSeq PrincipalComponent rlog heatmaps
updated 4.7 years ago by 43k • written 4.7 years ago by ▴ 30
4
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5
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2.1k
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DEseq2 results
heatmaps DEGs PCA
updated 4.7 years ago by ★ 4.0k • written 4.8 years ago by • 0
0
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0
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1.1k
views
How to generate input file for Bioconductor package heatmaps
heatmaps input file
updated 6.7 years ago by 68k • written 6.7 years ago by ▴ 10
34 results • Page 1 of 1
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Replies
Comment: upstream git branches of bioc-release by TrentonCollier99 • 0
Thank you very much for taking the time to answer the question. I really appreciate your insights and comments. https://bioc-release.r-univ…
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0
Thank you very much! will take that into consideration
Comment: Large logFC but somewhat high FDR by JKim • 0
Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.
Comment: upstream git branches of bioc-release by Jeroen ▴ 10
OK I have updated https://bioc-release.r-universe.dev accordingly. Let me know if you find version differences when mirroring binaries.
Comment: Large logFC but somewhat high FDR by Gordon Smyth 53k
I don't know what `tp1` is. The relevant histogram would be: ``` hist(fit2$p.value[,"KO_vs_WT"]) ```
Votes
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
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