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Heatmaps
•
reset
2
votes
5
replies
1.6k
views
ComplexHeatmap - z-score color coding failed
heatmaps
ComplexHeatmap
17 months ago
Katharina
• 0
0
votes
1
reply
836
views
edgeR heatmap construction and interpretation
heatmaps
updated 6 months ago by
Gordon Smyth
50k • written 6 months ago by
ulin.1
• 0
4
votes
5
replies
1.3k
views
DEseq2 results
heatmaps
DEGs
PCA
updated 3.2 years ago by
Kevin Blighe
★ 3.9k • written 3.2 years ago by
MOHAMMAD
• 0
1
vote
1
reply
841
views
PCA rand heatmap of raw data
DESeq2
DiffSeq
PrincipalComponent
rlog
heatmaps
updated 3.2 years ago by
Michael Love
42k • written 3.2 years ago by
Fischer-philipp
▴ 30
0
votes
1
reply
2.4k
views
Can you colour dendrogram branch clusters in pheatmap?
R
heatmaps
pheatmap
updated 3.2 years ago by
Kevin Blighe
★ 3.9k • written 3.2 years ago by
trichorico
▴ 10
1
vote
1
reply
778
views
Method for generating heatmap of overlapping DEGs?
heatm
heatmaps
updated 2.1 years ago by
James W. MacDonald
65k • written 2.1 years ago by
axe880
• 0
0
votes
1
reply
1.1k
views
Help me do a gene enrichment analysis
DESeq2
topGO
heatmaps
updated 2.7 years ago by
Guandong Shang
▴ 40 • written 2.7 years ago by
anasjamshed1994
• 0
0
votes
3
replies
1.3k
views
Persisting error in making a heatmap
heatmaps
gplots
22 months ago
beslinail
• 0
0
votes
2
replies
1.7k
views
PCA and heatmaps: most variable genes selection
DESeq2
ExpressionData
heatmaps
pca
2.9 years ago
Clara
• 0
0
votes
1
reply
635
views
struggling to create a heatmap
DESeq2
heatmaps
updated 15 months ago by
ATpoint
★ 4.1k • written 15 months ago by
m-bihie
▴ 10
0
votes
1
reply
708
views
Error when trying to create a heatmap with DESeq2
Heatmap
RNA-seqanalysis
heatmaps
DESeq2
updated 6 months ago by
Basti
▴ 780 • written 6 months ago by
langziv
• 0
1
vote
1
reply
990
views
How fix lines of dendrogram that overlap in the column portion of a heatmap?
heat
heatmaps
updated 22 months ago by
James W. MacDonald
65k • written 22 months ago by
MauriAndres
• 0
0
votes
3
replies
582
views
Installing Gpart
gpart
heat
heatmaps
updated 6 months ago by
James W. MacDonald
65k • written 6 months ago by
Benjamin
• 0
0
votes
2
replies
623
views
Drawing a heatmap with only limited genes
heatmaps
updated 10 months ago by
sayite3688
• 0 • written 10 months ago by
dania.khalid
• 0
2
votes
3
replies
991
views
How can I draw a barplot of complexheatmap according 'Tumor Type'
heatma
heatmaps
ComplexHeatmap
updated 15 months ago by
elefth.pavlos
▴ 40 • written 15 months ago by
Sooni
▴ 10
0
votes
3
replies
1.2k
views
Generate Heatmap from Gene Names after DESEQ2
DESeq2
DESEQ2
tximeta
SummarizedExperiment
heatmaps
updated 19 months ago by
James W. MacDonald
65k • written 20 months ago by
uhlkatie
• 0
0
votes
2
replies
3.8k
views
Scaling for p.heatmap
heatmaps
pheatmap
scaling
22 months ago
Bhavana
• 0
2
votes
2
replies
629
views
[DESeq2] There is no difference in expression in my heatmap
DESeq2
heatmaps
15 months ago
Sooni
▴ 10
0
votes
1
reply
633
views
Heatmap of two conditions from the normalized gene count data
GeneExpression
heatmaps
updated 14 months ago by
ATpoint
★ 4.1k • written 14 months ago by
Amazing570
• 0
0
votes
1
reply
2.1k
views
Heatmap with result DESeq analysis
DESeq2
results
Heatmaps
plots
updated 18 months ago by
Michael Love
42k • written 19 months ago by
Chiara
• 0
2
votes
5
replies
3.2k
views
How to identify top most variable genes from log2 normalized data?
supervised
edgeR
variance
RNASeq
heatmaps
updated 15 months ago by
Gordon Smyth
50k • written 16 months ago by
mohammedtoufiq91
▴ 10
1
vote
1
reply
509
views
Add 'ColSideColors' using 'heatmap.2' function
ColSideColors
heatmaps
heatmap.2
updated 13 months ago by
Konstantinos Yeles
▴ 80 • written 13 months ago by
Sooni
▴ 10
0
votes
1
reply
1.5k
views
Complex Heatmap - correlation matrix - how to have exact same annotation with same colors for rows and columns?
R
heatmaps
ComplexHeatmap
Heatma
updated 20 months ago by
Zuguang Gu
▴ 260 • written 20 months ago by
תום
• 0
0
votes
2
replies
887
views
How to use the plotExprHeatmap function to draw heat maps according to groups
grou
heatmaps
CyTOFpower
cytofWorkflow
14 months ago
shuangshuang
• 0
0
votes
0
replies
721
views
How to generate input file for Bioconductor package heatmaps
heatmaps
input file
updated 5.2 years ago by
James W. MacDonald
65k • written 5.2 years ago by
bony.dekumar
▴ 10
0
votes
0
replies
825
views
WGCNA Heatmap and Export to Cytoscape Not Working
Cytoscape
Heatmap
heatmaps
WGCNA
15 months ago
gianni.drm
• 0
26 results • Page
1 of 1
Recent ...
Replies
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
Hervé Pagès
16k
Indeed. Calculations involving floating point arithmetic are architecture-dependent, and testing the results should be done with `all.equal…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I will follow what you suggested. I didn't use max gap anywhere. I was following statistic I and regarding the size of features, my small…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
Oh I see, for the second question, I don't have a great answer. I typically think of one set as the anchor, whose ascertainment is driving …
Comment: Help with running egsea()
by
James W. MacDonald
65k
Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…
Comment: Help with running egsea()
by
Chris
• 0
Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…
Votes
Answer: How to save the DEXSeq results
Answer: minfi support of illumina Infinium methylationEPIC v2.0
Comment: minfi support of illumina Infinium methylationEPIC v2.0
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Help with running egsea()
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