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1.4k

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DESeq2 log2 normalized counts

updated 14 months ago by James W. MacDonald 65k • written 14 months ago by Laia ▴ 10

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1.9k

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Log2 edgeR RNA limma Normalization

17 months ago Sara • 0

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2.6k

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log2 DESeq2

21 months ago User000 • 0

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887

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edgeR RNA-Seq log2 foldchange q_value

updated 2.3 years ago by Gordon Smyth 50k • written 2.3 years ago by johndavidgriner74 • 0

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1.9k

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log2 RMA Affymetrix affy Normalization

updated 3.2 years ago by Kevin Blighe ★ 3.9k • written 3.2 years ago by Lara • 0

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1.4k

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normalized counts log2

5.6 years ago agdif ▴ 10

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927

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mfuzz fold change log2 STANDARDISATION

5.8 years ago prakashpandey1111 • 0

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784

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NMF log2 classification bioconductor

5.9 years ago Seymoo • 0

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5.7k

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limma pvalue log2fc log2

updated 17 months ago by James W. MacDonald 65k • written 8.1 years ago by serpalma.v ▴ 60

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3.0k

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limma export log2 data agilent

updated 9.5 years ago by James W. MacDonald 65k • written 9.5 years ago by Jahn Davik ▴ 110

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Comment: Deseq2. decontXcounts not integers. Useful alternative? by ATpoint ★ 4.0k

I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…

Answer: Improving the design matrices vignette in RNAseq123 by Gordon Smyth 50k

Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! I'll review my code from top to bottom.

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;

Votes

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

biomaRt error: database disk image is malformed

Comment: biomaRt : No lock file for BiocFileCache

Answer: Cross-species analysis - how to compute the mid parent value?

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0