Showing : Proteomics • reset
0
votes
7
replies
1.2k
views
getBioC and install.packages2 fail
Proteomics reposTools Proteomics reposTools
updated 18.5 years ago by ★ 7.4k • written 18.5 years ago by ▴ 210
1
vote
5
replies
2.3k
views
Using Limma for proteomics (2D DIGE) datasets
Proteomics limma impute limmaGUI Proteomics limma impute limmaGUI
updated 8.2 years ago by • 0 • written 13.9 years ago by ▴ 60
1
vote
8
replies
1.8k
views
DESEQ2 and continuous data
proteomics deseq2
7.7 years ago • updated 7.6 years ago carandres74 • 0
25
votes
9
replies
6.0k
views
voom for spectral counts
limma voom proteomics spectral counts massspectrometry
updated 8.7 years ago by 48k • written 8.7 years ago by ▴ 40
0
votes
3
replies
2.0k
views
limma and Volcano Plots
Microarray Proteomics Cancer PROcess Microarray Proteomics Cancer PROcess
updated 9.7 years ago by 48k • written 9.7 years ago by ▴ 130
0
votes
3
replies
3.0k
views
from RefSeq to GO terms / gene symbol to geneID
Proteomics Coverage Annotation GO Proteomics Coverage Annotation GO
16.3 years ago • updated 16.2 years ago Simon Lin ▴ 270
0
votes
3
replies
1.8k
views
Problem with XCMS
xcms metabolomics lipidomics proteomics massspectrometry
7.7 years ago Titan • 0
4
votes
5
replies
1.6k
views
How to convert a xlsx data file to MSnSet format?
msnbase msmstests proteomics lc-ms/ms msnID
updated 4.6 years ago by 1.6k • written 4.6 years ago by ▴ 10
0
votes
8
replies
2.6k
views
Getting data into (and out of) the MSnSet object
proteomics MSnbase MSnSet readMSnSet msmsTests
updated 4.1 years ago by • 0 • written 5.7 years ago by ▴ 20
1
vote
12
replies
12k
views
Using limma for quantitative proteomics data
Microarray Proteomics limma Microarray Proteomics limma
11.3 years ago Yong Li ▴ 80
0
votes
8
replies
1.7k
views
IPI to entrez id
Proteomics GO biomaRt Proteomics GO biomaRt
12.6 years ago Dick Beyer ★ 1.4k
0
votes
3
replies
893
views
Using CDF file on affylmGUI
Proteomics GO affylmGUI Proteomics GO affylmGUI
updated 16.9 years ago by ▴ 450 • written 16.9 years ago by ▴ 70
1
vote
2
replies
1.3k
views
Deseq2 with replicate mean and variance information
deseq2 deseq differential analysis proteomics
5.5 years ago blehtine • 0
3
votes
4
replies
1.1k
views
Writing a loop to clean up protein names
Proteomics Transcriptomics Loops batch-processing R
updated 5.0 years ago by ▴ 80 • written 5.0 years ago by • 0
0
votes
3
replies
1.5k
views
GeneSetCollection from GSEA
Proteomics GSEABase Proteomics GSEABase
updated 15.6 years ago by 25k • written 15.6 years ago by ▴ 70
1
vote
6
replies
2.8k
views
DEP package: Problems installing on macOS
software error DEP proteomics
updated 3.2 years ago by 1.6k • written 3.2 years ago by • 0
1
vote
3
replies
1.5k
views
Isobar - generating IBSpectra object
isobar mzid mgf proteomics itraq
updated 8.7 years ago by 1.6k • written 8.7 years ago by • 0
0
votes
3
replies
1.1k
views
Find DEPs among TMT labeling proteom time course data by limma
limma proteomics TMTlabeling timecoursedata
updated 2.9 years ago by ▴ 300 • written 2.9 years ago by • 0
0
votes
1
reply
808
views
How to remove batch effect on DEP protemics package?
Proteomics DEP MassSpectrometryData
updated 2.2 years ago by • 0 • written 2.2 years ago by • 0
1
vote
2
replies
868
views
calculate theoretical isotope distribution give the AA sequence
Metabolomics proteomics MassSpectrometry
2.8 years ago Oliver • 0
3
votes
3
replies
889
views
Clarification of results tables in DEP
DEP proteomics
updated 4.2 years ago by ▴ 70 • written 4.2 years ago by ▴ 490
0
votes
5
replies
928
views
Error loading charm
Proteomics Proteomics
updated 11.4 years ago by ★ 4.3k • written 11.4 years ago by ▴ 110
0
votes
5
replies
623
views
Inquiry about suitable package for proteomics study design
Proteomics design
updated 11 months ago by • 0 • written 11 months ago by • 0
0
votes
3
replies
2.1k
views
How to carry out Gene Set Enrichment Analysis(GSEA) on an ordered list of Entrezgene ids?
Proteomics hgu95av2 GSEABase Proteomics hgu95av2 GSEABase
15.2 years ago anna freni sterrantino ▴ 120
0
votes
3
replies
922
views
multtest error - class label problem
Proteomics Proteomics
updated 17.3 years ago by ▴ 10 • written 17.3 years ago by ▴ 20
0
votes
3
replies
828
views
What does component or SCX classification in iTRAQ/TMT experiment represent?
proteomics
updated 4.8 years ago by 1.6k • written 4.8 years ago by • 0
0
votes
3
replies
980
views
PCA or concordance
Proteomics Proteomics
updated 13.6 years ago by 21k • written 13.6 years ago by ▴ 80
0
votes
2
replies
1.1k
views
affy expression values
Proteomics affy PROcess Proteomics affy PROcess
updated 21.2 years ago by ▴ 640 • written 21.2 years ago by ▴ 10
3
votes
2
replies
1.2k
views
DEP: Grouping Samples for missing value imputation
DEP missing value imputation proteomics rforproteomics
5.8 years ago • updated 5.6 years ago alex.gos90 ▴ 10
0
votes
2
replies
1.5k
views
How to normalized SWATH proteomic data?
proteomics SWATH
updated 7.6 years ago by 1.6k • written 7.6 years ago by • 0
2
votes
7
replies
1.3k
views
I get nothing in my up and down regulated genes
limma proteomics label free
7.1 years ago Nemo ▴ 80
3
votes
4
replies
2.4k
views
Protein differential Expression analysis
differential expression proteomics
updated 4 weeks ago by ★ 3.4k • written 5.7 years ago by • 0
0
votes
8
replies
1.3k
views
Bimodal Distrinbution
Proteomics Proteomics
updated 14.8 years ago by ▴ 120 • written 14.8 years ago by ▴ 20
5
votes
3
replies
1.6k
views
Strong upwards correlation between log fold change and average log expression in MD plot of Limma
limma proteomics
updated 5.9 years ago by 48k • written 5.9 years ago by • 0
1
vote
3
replies
815
views
Interpreting Fold Change Calculation in Limma to Non-Statisticians: Sanity Check
Limma proteomics limma
updated 4.3 years ago by • 0 • written 4.3 years ago by • 0
1
vote
3
replies
1.0k
views
a good pipline for proteomics
proteomics r
updated 8.0 years ago by 1.6k • written 8.0 years ago by ▴ 80
0
votes
1
reply
1.2k
views
Bioconductor 1.4 released
Proteomics Annotation Normalization GO Cancer CGH pamr gcrma gpls affyPLM webbioc bim
updated 19.4 years ago by 13k • written 19.4 years ago by ▴ 810
2
votes
5
replies
1.4k
views
NA coefficients values for samples with all zeros
limmagui proteomics
7.8 years ago vedran.franke • 0
8
votes
2
replies
2.5k
views
Statistical analysis of Spectral count data : edgeR, limma or others ?
spectral counts proteomics limma edger deseq
updated 8.2 years ago by 48k • written 8.2 years ago by ▴ 60
0
votes
1
reply
921
views
questions about Affy package from new user
Proteomics Normalization GO Preprocessing Clustering probe affy PROcess mscalib GO probe
updated 19.5 years ago by 63k • written 19.5 years ago by ▴ 210
1
vote
9
replies
2.1k
views
msnbase error when adding identification data
msnbase proteomics itraq
updated 8.7 years ago by 1.6k • written 8.7 years ago by • 0
0
votes
16
replies
1.9k
views
liimma and Across Array Normalisation
Microarray Proteomics Microarray Proteomics
updated 9.6 years ago by 48k • written 9.6 years ago by ▴ 130
1
vote
3
replies
4.3k
views
EdgeR for proteomics data
Proteomics Normalization edgeR Proteomics Normalization edgeR
updated 11 months ago by • 0 • written 9.7 years ago by ▴ 10
2
votes
1
reply
1.9k
views
DESeq package
Proteomics DESeq Proteomics DESeq
updated 10.9 years ago by ▴ 550 • written 10.9 years ago by ▴ 20
0
votes
10
replies
1.1k
views
warning in lumi
Proteomics lumi Proteomics lumi
updated 11.6 years ago by 25k • written 11.6 years ago by ▴ 110
0
votes
2
replies
964
views
VanillaICE
Proteomics VanillaICE Proteomics VanillaICE
updated 11.9 years ago by ★ 6.8k • written 11.9 years ago by ▴ 110
0
votes
1
reply
2.5k
views
Import Bam index (Rsamtools)
Proteomics Rsamtools Proteomics Rsamtools
updated 11.5 years ago by 25k • written 11.5 years ago by ▴ 110
2
votes
3
replies
1.1k
views
rTANDEM package -- An R encapsulation of the X!Tandem algorithm
Proteomics rTANDEM Proteomics rTANDEM
updated 10.8 years ago by 13k • written 10.8 years ago by ▴ 40
0
votes
1
reply
1.0k
views
Off topic - JOB
SNP Sequencing Proteomics SNP Sequencing Proteomics
updated 15.7 years ago by ▴ 70 • written 15.7 years ago by ★ 1.1k
0
votes
1
reply
773
views
Problems with IlluminaHumanMethylation27k.db
Proteomics Proteomics
12.6 years ago Francesco Mancuso ▴ 110
50 results • Page 1 of 1
Recent ...
Replies
Comment: Speeding up of DelayedArray::write_block() by Koki ▴ 10
Thank you, I have a very clear understanding of the situation. > COO_Sparse_HDF5RealizationSink(), writeHDF5SparseArray(), COO_H5SparseArr…
Comment: Speeding up of DelayedArray::write_block() by Koki ▴ 10
There are a few places inside my `DelayedTensor` package that use `SparseArraySeed`. Will these stop working in next coming BioC 3.18, whe…
Comment: DelayedArray::read_sparse_block by Hervé Pagès 16k
No. But I will need to modify the `write_block()` method for TENxRealizationSink implemented in **HDF5Array** to make it handle blocks that…
Answer: ''Model_Matrix'' error by Gordon Smyth 48k
This is actually an error message from base R rather than from limma. The error says that `Group` contains 0 or 1 levels, so your assumptio…
Comment: Speeding up of DelayedArray::write_block() by Hervé Pagès 16k
> I don't know the details but do you mean using HDF5RealizationSink or TENxRealizationSink will make it possible to writing sparse multi-d…
Votes
Steps needed to change design (relevel factors) in DESeq2
Steps needed to change design (relevel factors) in DESeq2
Answer: DMRcate design
Answer: DMRcate design
Comment: DMRcate design
Awards • All
Popular Question to Koki ▴ 10
Popular Question to Gordon Smyth 48k
Popular Question to Hervé Pagès 16k
Popular Question to Vincent J. Carey, Jr. 6.7k
Popular Question to sohail.mbio ▴ 10
Locations • All
Russia, 5 minutes ago
Italy, 5 minutes ago
United States, 8 minutes ago
Germany, 27 minutes ago
Russia, 2 hours ago
Traffic: 347 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6