Showing : SNP • reset
6
votes
11
replies
1.7k
views
"associated_gene" attribute from biomaRt returns too few values - SNP(rsID dataset)
r biomart SNP annotation HUGO
updated 3.7 years ago by ★ 6.5k • written 3.7 years ago by • 0
5
votes
4
replies
9.7k
views
Getting rs ids using chr coordinates | Biomart
SNP rs id Biomart Chromosome coordinates
updated 9 months ago by 65k • written 3.7 years ago by • 0
5
votes
9
replies
4.2k
views
Looking for annotation file for Affymetrix SNP 6.0
copynumber snp affymetrix
8.4 years ago KB ▴ 50
5
votes
5
replies
4.2k
views
SNP Function Information from biomaRt
biomart snp nonsynonymous
updated 9.5 years ago by 21k • written 9.6 years ago by ▴ 10
3
votes
4
replies
1.5k
views
How often are SNPlocs.Hsapiens.dbSNP-* packages released? and why that time scale?
SNPlocs SNP dbsnp
7.2 years ago Ramiro Magno ▴ 100
3
votes
5
replies
1.6k
views
Understanding PureCN and its germline SNPs
PureCN germline SNP
updated 5.9 years ago by • 0 • written 6.1 years ago by ▴ 10
3
votes
3
replies
1.9k
views
Retrieve SNP flanking sequences in biomaRt
biomart snp upstream_flank downstream_flank
updated 7.4 years ago by ★ 6.5k • written 7.4 years ago by ▴ 20
2
votes
1
reply
2.1k
views
overlap GRangesList and vcf
SNP SNP
updated 11.7 years ago by ★ 6.8k • written 11.7 years ago by ▴ 120
2
votes
2
replies
2.1k
views
Converting single GRanges object as per chromosome GRangeList
SNP GO convert SNP GO convert
updated 10.4 years ago by ★ 13k • written 10.4 years ago by ▴ 260
2
votes
1
reply
1.2k
views
GenomicAlignments/access correct bp positions near indels
genomicranges genomicalignments snp
updated 7.0 years ago by 16k • written 7.0 years ago by ▴ 90
2
votes
3
replies
2.4k
views
ggbio circular plot
ggbio SNP granges
updated 8.4 years ago by ★ 11k • written 8.4 years ago by • 0
2
votes
2
replies
2.5k
views
How to convert 1000 genomes VCF files to the format of traditional SNP array format?
SNP 1000genome
updated 3.8 years ago by 25k • written 3.8 years ago by ▴ 20
1
vote
2
replies
2.1k
views
DNAcopy: Using log-ratios and B-allele frequencies
sequencing snp
updated 8.6 years ago by ▴ 20 • written 8.6 years ago by • 0
1
vote
2
replies
1.3k
views
TCGA MAF (Mutations) data
TCGA MAF GDC snp mutations
updated 5.0 years ago by 21k • written 5.0 years ago by ▴ 160
1
vote
6
replies
2.3k
views
Good way to get location of in-del SNPs in UCSC coordinates?
snplocs snp
9.4 years ago garrisrg ▴ 10
1
vote
2
replies
3.5k
views
Calculate the number of SNP differences between sequences in multiple alignment
pairwisealignment SNP dnasequence
7.2 years ago lordbleys • 0
1
vote
3
replies
1.3k
views
VariantAnnotation package with snp location
SNP VariantAnnotation VariantAnnotation SNP VariantAnnotation VariantAnnotation
updated 11.2 years ago by ★ 4.2k • written 11.2 years ago by ▴ 970
1
vote
0
replies
2.1k
views
Job: Bioinformatics Scientist @ Berlin Institute for Medical Systems Biology
rnaseq snp chipseq Job
7.9 years ago altuna akalin ▴ 20
1
vote
0
replies
1.1k
views
biomart Ensembl Regulatory Build
SNP Transcription biomaRt SNP Transcription biomaRt
12.9 years ago Fabrice Tourre ▴ 970
1
vote
0
replies
942
views
SIM new package for Statistical Integration of Microarrays
SNP Microarray Visualization Cancer SNP Microarray Visualization Cancer
15.6 years ago Maarten van Iterson ▴ 60
1
vote
2
replies
1.7k
views
biomaRt error message
biomaRt snp
updated 9.4 years ago by ▴ 800 • written 9.5 years ago by ▴ 10
0
votes
3
replies
1.4k
views
GWATools use in creating ncdf files
SNP cdf GWASTools SNP cdf GWASTools
updated 10.9 years ago by ▴ 60 • written 10.9 years ago by ▴ 870
0
votes
5
replies
1.6k
views
Visualization of alignments with mismatch bases
SNP Coverage Alignment Visualization ggbio SNP Coverage Alignment Visualization ggbio
updated 11.2 years ago by ▴ 420 • written 11.2 years ago by ★ 11k
0
votes
1
reply
1.7k
views
getBM function in biomaRt
SNP GO hgu133a SNP GO hgu133a
updated 14.4 years ago by ▴ 600 • written 14.4 years ago by ★ 1.1k
0
votes
0
replies
608
views
Reading Affy Snp Chips. Probe level problem.
SNP probe affy SNP probe affy
19.7 years ago Raoul-Sam Daruwala ▴ 30
0
votes
1
reply
813
views
probe length was:RE: GCRMA backgrounds?
SNP Cancer affy gcrma SNP Cancer affy gcrma
updated 19.7 years ago by ▴ 810 • written 19.7 years ago by ▴ 80
0
votes
0
replies
929
views
Software and references for SNP chip data analysis
SNP SNP
19.6 years ago Caimiao Wei ▴ 100
0
votes
4
replies
1.1k
views
how to read in affy snp 500K arrays
SNP affy SNP affy
updated 16.5 years ago by ★ 4.3k • written 16.5 years ago by ▴ 640
0
votes
0
replies
976
views
SNP analysis
SNP affy SNP affy
19.4 years ago Ulrich Pfeffer ▴ 50
0
votes
1
reply
762
views
affy SNP chips
SNP SNP
updated 19.1 years ago by 65k • written 19.1 years ago by ★ 1.4k
0
votes
2
replies
1.7k
views
find gene symbols immediately flanking before and after a SNP position
SNP SNP
updated 11.2 years ago by ★ 6.8k • written 11.2 years ago by ▴ 220
0
votes
1
reply
965
views
probe length was:RE: GCRMA backgrounds?
SNP probe affy gcrma SNP probe affy gcrma
19.8 years ago Paul Boutros ▴ 340
0
votes
4
replies
1.2k
views
GCRMA backgrounds?
SNP affy gcrma SNP affy gcrma
updated 19.8 years ago by ▴ 940 • written 19.8 years ago by ▴ 60
0
votes
1
reply
1000
views
Convert Affy SNP array 0, 1, 2 to A C G T
SNP affy convert SNP affy convert
11.5 years ago Fabrice Tourre ▴ 970
0
votes
0
replies
1.1k
views
qPCR 2009 Event Agenda Online
SNP qPCR Normalization Visualization Regression Cancer probe microRNA SNP qPCR Cancer
15.2 years ago qPCR Platform - the reference in real-t… ▴ 170
0
votes
4
replies
1.1k
views
Communicating gene-probe relationships to sam
SNP Biobase siggenes SNP Biobase siggenes
18.0 years ago Charles Crane ▴ 30
0
votes
1
reply
776
views
Tools to process Affymetrix tiling arrays/SNPchips
SNP SNP
updated 19.9 years ago by 65k • written 19.9 years ago by ▴ 50
0
votes
2
replies
851
views
Affy SNP chips.
SNP probe affy SNP probe affy
updated 19.7 years ago by ▴ 320 • written 19.7 years ago by ▴ 30
0
votes
1
reply
1.5k
views
DNAcopy for CNV in SNP Affy 6.0
SNP affy DNAcopy SNP affy DNAcopy
12.1 years ago Ekta Jain ▴ 370
0
votes
0
replies
1.1k
views
[SPAM?] Bioconductor Digest, Vol 41, Issue 22 (Out of Office)
SNP Microarray Annotation GO Network Clustering Survival Cancer hgu133a cdf probe affy
17.8 years ago Todd Nick ▴ 10
0
votes
0
replies
1.7k
views
Ph.D / Postdoctoral Position in Bioinformatics at Johannes Kepler University Linz, Austria
SNP Microarray Biophysics Classification SNP Microarray Biophysics Classification
18.0 years ago Birgit Hauer ▴ 30
0
votes
1
reply
798
views
SNP chips
SNP cdf affy SNP cdf affy
updated 20.6 years ago by 65k • written 20.6 years ago by ▴ 50
0
votes
1
reply
890
views
tiling/SNP microarrays
SNP Coverage tilingArray SNP Coverage tilingArray
updated 17.8 years ago by 21k • written 17.8 years ago by ▴ 10
0
votes
10
replies
1.5k
views
Affymetrix 500k SNP chips -- copy number/LOH/deletions
SNP SNP
17.7 years ago Stephen Henderson ★ 1.0k
0
votes
0
replies
724
views
Cancer genome project SNP data
SNP Cancer SNP Cancer
17.7 years ago Daniel Brewer ★ 1.9k
0
votes
2
replies
1.2k
views
genotyping RLMM probe level model?
SNP probe RLMM SNP probe RLMM
updated 17.6 years ago by ★ 4.3k • written 17.6 years ago by ▴ 170
0
votes
2
replies
884
views
cdfenv files ATTN: James McDonald
SNP cdf probe reposTools affy SNP cdf probe reposTools affy
updated 17.6 years ago by 65k • written 17.6 years ago by ▴ 20
0
votes
3
replies
1.2k
views
Spatial Correction
SNP Normalization affy oligo SNP Normalization affy oligo
updated 17.5 years ago by ▴ 120 • written 17.5 years ago by ▴ 170
0
votes
1
reply
1.3k
views
[Bioc-devel] SNPscan -> SNPchip
SNP Annotation Yeast Biobase SNPchip SNP Annotation Yeast Biobase SNPchip
updated 17.5 years ago by ▴ 250 • written 17.5 years ago by ▴ 170
0
votes
3
replies
1.2k
views
[JOB] Bioinformatics positions at NCI
SNP Cancer CGH affy SNP Cancer CGH affy
updated 17.9 years ago by ▴ 190 • written 17.9 years ago by 21k
50 results • Page 1 of 1
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Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 30
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
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