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Tutorial
•
reset
1
vote
2
replies
2.3k
views
Cannot read plink files correctly
snprelate
Tutorial
updated 8.6 years ago by
zhengx
▴ 30 • written 8.6 years ago by
AR3513
• 0
0
votes
2
replies
3.2k
views
LEA won't run lfmm sequentially and independently on individual environmental variables when d set to 0
LEA
Tutorial
lfmm
updated 3 months ago by
Michael Love
43k • written 8.6 years ago by
afreedman405
• 0
0
votes
2
replies
1.8k
views
Error in GRanges strand input
GRanges
Tutorial
updated 8.7 years ago by
Martin Morgan
25k • written 8.7 years ago by
prabin.dm
• 0
8
votes
4
replies
5.5k
views
Tutorial:
Epigenomics RoadMap Project files now accessible via AnnotationHub
AnnotationHub
Epigenomics
BigData
RoadMap Project
NIH
Tutorial
updated 8.7 years ago by
vanesa_1230
• 0 • written 10.6 years ago by
Sonali Arora
▴ 390
1
vote
2
replies
3.8k
views
Tutorial for RNA-Seq Data Analysis
rnaseq
data analysis
tutorial
workflows
differential gene expression
updated 8.8 years ago by
Aaron Lun
★ 29k • written 8.8 years ago by
Pranavathiyani G
• 0
1
vote
4
replies
2.5k
views
New to mass spec data analysis
data analysis
xcms
Tutorial
updated 14 months ago by
abhisek001
• 0 • written 8.8 years ago by
Dan_reichert
• 0
2
votes
3
replies
2.5k
views
Limma voom mechanism
rnaseq
limma
limma-voom
Tutorial
updated 8.8 years ago by
Aaron Lun
★ 29k • written 8.8 years ago by
icxa0409
• 0
0
votes
14
replies
4.6k
views
Error through importing (project = 'SRP009615') or even to download any BigWig File
recount
Tutorial
updated 8.9 years ago by
Leonardo Collado Torres
★ 1.1k • written 8.9 years ago by
Mustafa ABUELQUMSAN
• 0
3
votes
8
replies
4.1k
views
Tutorial:
"developing" with HDF5Array
hdf5
DelayedArray
summarizedexperiment
Tutorial
8.9 years ago
Vincent J. Carey, Jr.
6.7k
0
votes
0
replies
9.2k
views
Tutorial:
doParallel foreach already exporting variable(s)
doParallel
foreach
export
Tutorial
8.9 years ago
solo7773
▴ 10
2
votes
5
replies
2.2k
views
Differential Gene Expression
deseq2
bioinformatics
rna-seq
Tutorial
updated 9.3 years ago by
Michael Love
43k • written 9.3 years ago by
fromhj304
▴ 10
4
votes
0
replies
4.3k
views
Tutorial:
Workflow for low-level analysis of single-cell RNA-seq data
scran
scater
single cell
Tutorial
9.4 years ago
Aaron Lun
★ 29k
0
votes
2
replies
1.6k
views
count table generation using summarizeOverlaps
deseq2
Tutorial
9.5 years ago
Gyan Prakash Mishra
▴ 10
0
votes
7
replies
4.8k
views
DESeq2 LRT Error: less than one degree of freedom, perhaps full and reduced models are not in the correct order
deseq2
systempiper
Tutorial
9.5 years ago
musa
▴ 10
5
votes
1
reply
4.0k
views
Tutorial:
Prototyping An Analysis Pipeline For Lexogen 3'-UTR RNA-seq In Bioconductor
shortread
rsubread
ensembldb
Tutorial
9.7 years ago
phil.chapman
▴ 150
1
vote
1
reply
1.9k
views
edgeR, DE between 4 different samples
edger
differential gene expression
GLM
Tutorial
updated 9.8 years ago by
James W. MacDonald
68k • written 9.8 years ago by
wendy_11
• 0
2
votes
3
replies
1.6k
views
Adapting old Workshop to recent changes of the Limma package
limma
microarray
tutorial
updated 9.8 years ago by
Aaron Lun
★ 29k • written 9.8 years ago by
giroudpaul
▴ 40
1
vote
1
reply
2.0k
views
Find Intron Length from Annotation File?
annotation
arabidopsis thaliana
Tutorial
updated 9.8 years ago by
Martin Morgan
25k • written 9.8 years ago by
smurfblack
• 0
7
votes
0
replies
4.6k
views
Tutorial:
New edX "Data analysis for Life Sciences" module: High performance computing for reproducible genomics
annotation
genomicranges
visualization
docker
shiny
Tutorial
9.8 years ago
Vincent J. Carey, Jr.
6.7k
0
votes
0
replies
1.9k
views
News:
Announcing short course in computational proteomics, May 2-6, 2016, Boston MA
proteomics
tutorial
mass spectrometry
computational biology
News
9.9 years ago
Olga Vitek
▴ 40
5
votes
4
replies
2.2k
views
Is there any tutorial to perform Mouse/Human Transcriptome microarrays 1.0 ?
mta10
tutorial
affy
updated 10.2 years ago by
James W. MacDonald
68k • written 10.2 years ago by
jacorvar
▴ 40
7
votes
2
replies
8.4k
views
Tutorial:
Course Material from BioC 2015: Where Software and Biology Connect
bioc2015
course-material
Tutorial
updated 10.5 years ago by
Dan Tenenbaum
★ 8.2k • written 10.5 years ago by
Sonali Arora
▴ 390
11
votes
0
replies
6.6k
views
Tutorial:
Introduction to Bioconductor for high-throughput sequence analysis
GenomicRanges
Annotation
RNAseq
visualization
Tutorial
10.5 years ago
Martin Morgan
25k
6
votes
1
reply
4.6k
views
Tutorial:
Orchestrating a small, parallel, RNA-seq pre-processing workflow using R
rnaseq
biocparallel
workflows
sra
Tutorial
10.5 years ago
Sean Davis
21k
8
votes
0
replies
4.2k
views
Tutorial:
Statistics and Computing in Genome Science (CSAMA) Course Material
rnaseq
chipseq
visualization
metagenomics
proteomics
Tutorial
10.5 years ago
Martin Morgan
25k
3
votes
0
replies
4.5k
views
Tutorial:
dplyr and the GEOmetadb package for mining NCBI GEO metadata
geometadb
dplyr
Tutorial
10.6 years ago
Sean Davis
21k
76 results • Page
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Comment: Is it possible to install previous versions of the packages instead of the newes
by
Lamb
• 0
I totally feel you on the struggle to manage package versions! Just last month, I had to roll back a package in R for a project because the…
Comment: Error message that there is no package called Biobase
by
Lamb
• 0
Hey there! I stumbled upon your post about the no package called Biobase error, and it really struck a chord with me. I have faced similar …
Answer: Combining two proteomics datasets with limpa
by
Gordon Smyth
53k
Hi Andrew, We don't have that much experience combining different datasets with limpa yet, but my feeling is that the same DPC should be u…
Comment: Guitar R package requires update due to dependency GenomicFeatures
by
ferran.llobet.cabau
▴ 10
Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…
Comment: Ensembl plants at annotationHub?
by
Guido Hooiveld
★ 4.1k
Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…
Votes
limma moderated t-statistics and B-statistics
Comment: Guitar R package requires update due to dependency GenomicFeatures
A: how to control age and gender effect in expression data using DESeq2
A: how to control age and gender effect in expression data using DESeq2
how to control age and gender effect in expression data using DESeq2
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