Showing : Tutorial • reset
1
vote
2
replies
2.2k
views
Cannot read plink files correctly
snprelate Tutorial
updated 8.4 years ago by ▴ 30 • written 8.4 years ago by • 0
0
votes
2
replies
3.1k
views
LEA won't run lfmm sequentially and independently on individual environmental variables when d set to 0
LEA Tutorial lfmm
updated 8 weeks ago by 43k • written 8.5 years ago by • 0
0
votes
2
replies
1.7k
views
Error in GRanges strand input
GRanges Tutorial
updated 8.5 years ago by 25k • written 8.6 years ago by • 0
8
votes
4
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5.4k
views
Tutorial: Epigenomics RoadMap Project files now accessible via AnnotationHub
AnnotationHub Epigenomics BigData RoadMap Project NIH Tutorial
updated 8.5 years ago by • 0 • written 10.5 years ago by ▴ 390
1
vote
2
replies
3.7k
views
Tutorial for RNA-Seq Data Analysis
rnaseq data analysis tutorial workflows differential gene expression
updated 8.6 years ago by ★ 29k • written 8.6 years ago by • 0
1
vote
4
replies
2.4k
views
New to mass spec data analysis
data analysis xcms Tutorial
updated 12 months ago by • 0 • written 8.6 years ago by • 0
2
votes
3
replies
2.4k
views
Limma voom mechanism
rnaseq limma limma-voom Tutorial
updated 8.6 years ago by ★ 29k • written 8.6 years ago by • 0
0
votes
14
replies
4.4k
views
Error through importing (project = 'SRP009615') or even to download any BigWig File
recount Tutorial
updated 8.7 years ago by ★ 1.1k • written 8.7 years ago by • 0
3
votes
8
replies
4.0k
views
Tutorial: "developing" with HDF5Array
hdf5 DelayedArray summarizedexperiment Tutorial
8.8 years ago Vincent J. Carey, Jr. 6.7k
0
votes
0
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9.0k
views
Tutorial: doParallel foreach already exporting variable(s)
doParallel foreach export Tutorial
8.8 years ago solo7773 ▴ 10
2
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5
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2.1k
views
Differential Gene Expression
deseq2 bioinformatics rna-seq Tutorial
updated 9.1 years ago by 43k • written 9.1 years ago by ▴ 10
4
votes
0
replies
4.2k
views
Tutorial: Workflow for low-level analysis of single-cell RNA-seq data
scran scater single cell Tutorial
9.2 years ago Aaron Lun ★ 29k
0
votes
2
replies
1.6k
views
count table generation using summarizeOverlaps
deseq2 Tutorial
9.3 years ago Gyan Prakash Mishra ▴ 10
0
votes
7
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4.7k
views
DESeq2 LRT Error: less than one degree of freedom, perhaps full and reduced models are not in the correct order
deseq2 systempiper Tutorial
9.4 years ago musa ▴ 10
5
votes
1
reply
3.9k
views
Tutorial: Prototyping An Analysis Pipeline For Lexogen 3'-UTR RNA-seq In Bioconductor
shortread rsubread ensembldb Tutorial
9.6 years ago phil.chapman ▴ 150
1
vote
1
reply
1.8k
views
edgeR, DE between 4 different samples
edger differential gene expression GLM Tutorial
updated 9.6 years ago by 68k • written 9.6 years ago by • 0
2
votes
3
replies
1.5k
views
Adapting old Workshop to recent changes of the Limma package
limma microarray tutorial
updated 9.6 years ago by ★ 29k • written 9.6 years ago by ▴ 40
1
vote
1
reply
2.0k
views
Find Intron Length from Annotation File?
annotation arabidopsis thaliana Tutorial
updated 9.7 years ago by 25k • written 9.7 years ago by • 0
7
votes
0
replies
4.5k
views
Tutorial: New edX "Data analysis for Life Sciences" module: High performance computing for reproducible genomics
annotation genomicranges visualization docker shiny Tutorial
9.7 years ago Vincent J. Carey, Jr. 6.7k
0
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0
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1.8k
views
News: Announcing short course in computational proteomics, May 2-6, 2016, Boston MA
proteomics tutorial mass spectrometry computational biology News
9.8 years ago Olga Vitek ▴ 40
5
votes
4
replies
2.1k
views
Is there any tutorial to perform Mouse/Human Transcriptome microarrays 1.0 ?
mta10 tutorial affy
updated 10.1 years ago by 68k • written 10.1 years ago by ▴ 40
7
votes
2
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8.3k
views
Tutorial: Course Material from BioC 2015: Where Software and Biology Connect
bioc2015 course-material Tutorial
updated 10.3 years ago by ★ 8.2k • written 10.3 years ago by ▴ 390
11
votes
0
replies
6.5k
views
Tutorial: Introduction to Bioconductor for high-throughput sequence analysis
GenomicRanges Annotation RNAseq visualization Tutorial
10.3 years ago Martin Morgan 25k
6
votes
1
reply
4.5k
views
Tutorial: Orchestrating a small, parallel, RNA-seq pre-processing workflow using R
rnaseq biocparallel workflows sra Tutorial
10.4 years ago Sean Davis 21k
8
votes
0
replies
4.1k
views
Tutorial: Statistics and Computing in Genome Science (CSAMA) Course Material
rnaseq chipseq visualization metagenomics proteomics Tutorial
10.4 years ago Martin Morgan 25k
3
votes
0
replies
4.5k
views
Tutorial: dplyr and the GEOmetadb package for mining NCBI GEO metadata
geometadb dplyr Tutorial
10.4 years ago Sean Davis 21k
76 results • Page 2 of 2
Recent ...
Replies
Comment: Issues with downloading biomaRt - SeqInfo and S4 Vectors by James W. MacDonald 68k
Note that `S4Vectors` contains source code, so you will also need to [install RTools first][1]. [1]: https://cran.r-project.org/bin/win…
Answer: Issues with downloading biomaRt - SeqInfo and S4 Vectors by shepherl 4.2k
Our windows binaries are currently lagging behind as we are currently do not have a windows builder. If you are on windows you can try ins…
Comment: Issues with downloading biomaRt - SeqInfo and S4 Vectors by shepherl 4.2k
Can you please provide your `sessionInfo()` after doing `library("S4Vectors")`
Comment: VariantAnnotation does escape = within header string quotes by Daniel Cameron ▴ 40
I'm just stripping the entire line as a workaround using `meta(header(vcf))$DRAGENCommandLine = NULL`. Not ideal but at least subsequent pa…
Comment: Setting up a DESeq2 Design with Paired Data by Alexander • 0
Hi Kevin, Firstly, thank you so much for not only a very prompt response, but one that is incredibly insightful and helps me learn DESeq2 …
Votes
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
Awards • All
Scholar to shepherl 4.2k
Scholar to James W. MacDonald 68k
Popular Question to Daniel Cameron ▴ 40
Popular Question to Peter Hickey ▴ 760
Popular Question to edward.esiribloom • 0
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