Showing : WGCNA • reset
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How to draw module significance barplot?
module_significance barplot WGCNA
2.9 years ago Sooni ▴ 10
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895
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Multiple way network preservation
wgcna
2.9 years ago madzayasodara • 0
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0
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997
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WGCNA TOM file empty
WGCNA TOM
2.9 years ago gianni.drm • 0
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0
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1.6k
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WGCNA Heatmap and Export to Cytoscape Not Working
Cytoscape Heatmap heatmaps WGCNA
2.9 years ago gianni.drm • 0
0
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1
reply
1.7k
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WGCNA soft thresholding suggesting a power of 1
independence thresholding WGCNA connectivity scale
updated 22 months ago by ▴ 740 • written 2.9 years ago by • 0
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1
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879
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In WGCNA which is the matrix on which the eigen decomposition is run to get the module eigen gene
WGCNA
updated 2.9 years ago by ▴ 50 • written 3.0 years ago by • 0
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0
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1.0k
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Does verboseScatterplot in WGCNA package allow for highlighting a subset of genes
WGCNA
3.0 years ago S • 0
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0
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997
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Problems running WGCNA
WGCNA
3.1 years ago S • 0
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0
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819
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coexpression networks
WGCNA igraph
3.1 years ago María José • 0
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0
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947
views
A question about GWENA R/Bioconductor package
proteomics GWENA Proteomics WGCNA
3.1 years ago Abdullah • 0
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0
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1.5k
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WGCNA: minModuleSize is not responding correctly
Network minModuleSize WGCNA wgcna
3.1 years ago • updated 15 months ago bioinformaticssrm2011 • 0
2
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1
reply
1.3k
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WGCNA: weird issue of module with a single gene
network co-expression WGCNA
updated 3.3 years ago by ▴ 50 • written 3.3 years ago by ▴ 10
0
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1
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1.7k
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WGCNA - Network construction and module detection
gene Clustering wgcna flashclust
updated 3.4 years ago by ▴ 50 • written 3.4 years ago by ▴ 20
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0
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847
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MM-GS plot doesn't show any negative correlation
wgcna
3.5 years ago shubhankar.pawar • 0
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1
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1.8k
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WGCNA Export Eigengene Adjacency/Correlation values export
WGCNA
updated 3.5 years ago by • 0 • written 3.5 years ago by • 0
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0
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1.0k
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ARACNe Sample Size
grndata GRN ARACNE WGCNA
3.5 years ago Harrsha • 0
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0
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869
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Enrichment in genomic regions
Enrichment clusterPro WGCNA
3.5 years ago María José • 0
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0
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1.1k
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How to create consensus network from SampledBlockwiseModules in WGCNA?
NetworkInference SampledBlockWiseModules WGCNA
3.5 years ago as8020 • 0
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0
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618
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WGCNA consensusMEDdissimilrity
WGCNA
3.7 years ago María José • 0
1
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3
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2.6k
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WGCNA error
WGCNA
3.7 years ago ayabalbaa1990 • 0
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0
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1.4k
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The gene clusters from the WGCNA dendrogram output are not in order
Clustering WGCNA
3.7 years ago chiwut.wong • 0
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0
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1.1k
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FILTER GENES FOR WGCNA
WGCNA
3.7 years ago María José • 0
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0
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1.3k
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Only 1 gene/ feature is present in module after WGCNA analysis
RNASeq Clustering cluster WGCNA
3.7 years ago chiwut.wong • 0
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2
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2.2k
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WGCNA: Picking soft threshold before and after batch effect correction for Microbial data
wgcna WGCNA
written 3.8 years ago by • 0
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0
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863
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WGCNA analsyis: Cytoscape visualization (Error in recalculating topological overlap)
analsyis WGCNA
3.8 years ago Amazing570 • 0
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0
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1.1k
views
WGCNA with large Methylation matrix
wgcna R WGCNA Methylation
3.9 years ago Lorenzo • 0
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1
reply
1.0k
views
adjacency matrix in WGCNA returns NA
Coexpressionnetwork WGCNA
written 4.0 years ago by • 0
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1
reply
2.0k
views
WGCNA: Obtaining a consensus network from sampledBlockwiseModules function output
Network consensus sampledBlockwiseModules resampling WGCNA
updated 4.0 years ago by ★ 3.0k • written 4.0 years ago by ▴ 30
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1
reply
1.6k
views
WGCNA Preservation error
preservation WGCNA
updated 23 months ago by • 0 • written 4.0 years ago by • 0
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1
reply
1.6k
views
Outlier Removal WGCNA
RNASeq WGCNA
updated 4.0 years ago by 6.7k • written 4.0 years ago by ▴ 10
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0
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1.3k
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Removing low count/low variance genes
WGCNA
4.1 years ago Aya • 0
2
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9
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6.4k
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Deseq2 normalization for WGCNA
RNASeq Deseq2 DESeq2 WGCNA
updated 3.7 years ago by 43k • written 4.1 years ago by ▴ 10
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0
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2.3k
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How to choose singed or unsigned network in step-by-step WGCNA
WGCNA
4.1 years ago synat.keam • 0
0
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1
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1.5k
views
Trouble with gene dendrogram
Network RNASeq WGCNA
updated 3.0 years ago by • 0 • written 4.1 years ago by ▴ 10
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3
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2.4k
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Problem getting soft threshold power using WGCNA for RNA-seq data
RNASeq WGCNA
4.1 years ago jms2520 ▴ 10
0
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1
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1.7k
views
Summarising WGCNA data with modules and their corresponding gene ID and statistics
RNASeq WGCNA
4.2 years ago • updated 4.1 years ago synat.keam • 0
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0
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1.0k
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WGCNA Consensus Module Sign Question
wgcna
4.2 years ago erik.burchard • 0
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2
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1.4k
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WGCA tutorial related question
WGCNA
4.2 years ago wes • 0
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0
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1.3k
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WGCNA error during network construction
WGCNA Network R
4.3 years ago gitanjali • 0
0
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1
reply
2.1k
views
pre-proccessing of TCGA data for WGCNA
TCGAbiolinks WGCNA
updated 4.4 years ago by 43k • written 4.4 years ago by • 0
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0
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946
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WGCNA out of memory
wgcna RNASeq
4.4 years ago zli1 • 0
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2
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3.1k
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WGCNA adjust p value
WGCNA
written 4.4 years ago by ▴ 40
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0
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850
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Working with Binary Categorical Data using WGCNA and Unsigned Networks
WGCNA
4.5 years ago schum266 ▴ 10
1
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1
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1.8k
views
Determining number of genes in each module based on color in WGCNA package
WGCNA
4.6 years ago schum266 ▴ 10
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1
reply
1.1k
views
Query regarding WGCNA module formation
WGCNA RNAseq RNASeqData
updated 4.6 years ago by ▴ 760 • written 4.6 years ago by • 0
0
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1
reply
917
views
Query regarding WGCNA module
WGCNA
updated 4.6 years ago by ▴ 50 • written 4.6 years ago by • 0
0
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1
reply
2.7k
views
Removing batch effect by sva or combat and subsequent correlation analysis by WGCNA
WGCNA impute sva
updated 4.6 years ago by ▴ 60 • written 4.6 years ago by • 0
1
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1
reply
1.7k
views
No genes with Module Membership > 0.8
wgcna WGCNA hubgenes
updated 4.8 years ago by ▴ 70 • written 5.0 years ago by ▴ 10
10
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1
reply
5.4k
views
WGCNA: Module preservation vs consensus analysis
WGCNA wgcna
updated 4.8 years ago by ▴ 70 • written 4.9 years ago by ▴ 60
0
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0
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1.4k
views
Consensus wgcna soft threshold for each data
Transcriptomics WGCNA wgcna
4.8 years ago 2323982403 ▴ 60
336 results • Page 2 of 7
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Comment: Ensembl plants at annotationHub? by jwp48 • 0
Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!
Answer: Combining two proteomics datasets with limpa by Gordon Smyth 53k
Hi Andrew, We don't have that much experience combining different datasets with limpa yet, but my feeling is that the same DPC should be u…
Comment: Guitar R package requires update due to dependency GenomicFeatures by ferran.llobet.cabau ▴ 10
Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…
Comment: Ensembl plants at annotationHub? by Guido Hooiveld ★ 4.1k
Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…
Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by jtsy6383 • 0
Thanks for the reminder about DiffVar (for that project I ended up using GAMLSS in the end and haven't touched DiffVar since) and the alter…
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A: What is logFC and "B" in methylation analysis ??
limma moderated t-statistics and B-statistics
Comment: Guitar R package requires update due to dependency GenomicFeatures
A: how to control age and gender effect in expression data using DESeq2
A: how to control age and gender effect in expression data using DESeq2
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