Showing : WGCNA • reset
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Multiple way network preservation
wgcna
2.6 years ago madzayasodara • 0
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919
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WGCNA TOM file empty
WGCNA TOM
2.6 years ago gianni.drm • 0
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1.5k
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WGCNA Heatmap and Export to Cytoscape Not Working
Cytoscape Heatmap heatmaps WGCNA
2.6 years ago gianni.drm • 0
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1
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1.6k
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WGCNA soft thresholding suggesting a power of 1
independence thresholding WGCNA connectivity scale
updated 18 months ago by ▴ 740 • written 2.6 years ago by • 0
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1
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816
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In WGCNA which is the matrix on which the eigen decomposition is run to get the module eigen gene
WGCNA
updated 2.6 years ago by ▴ 50 • written 2.6 years ago by • 0
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961
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Does verboseScatterplot in WGCNA package allow for highlighting a subset of genes
WGCNA
2.6 years ago S • 0
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947
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Problems running WGCNA
WGCNA
2.7 years ago S • 0
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0
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765
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coexpression networks
WGCNA igraph
2.8 years ago María José • 0
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0
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879
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A question about GWENA R/Bioconductor package
proteomics GWENA Proteomics WGCNA
2.8 years ago Abdullah • 0
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0
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1.4k
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WGCNA: minModuleSize is not responding correctly
Network minModuleSize WGCNA wgcna
2.8 years ago • updated 11 months ago bioinformaticssrm2011 • 0
2
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1
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1.2k
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WGCNA: weird issue of module with a single gene
network co-expression WGCNA
updated 3.0 years ago by ▴ 50 • written 3.0 years ago by ▴ 10
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1
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1.6k
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WGCNA - Network construction and module detection
gene Clustering wgcna flashclust
updated 3.0 years ago by ▴ 50 • written 3.0 years ago by ▴ 20
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805
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MM-GS plot doesn't show any negative correlation
wgcna
3.1 years ago shubhankar.pawar • 0
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1
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1.7k
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WGCNA Export Eigengene Adjacency/Correlation values export
WGCNA
updated 3.2 years ago by • 0 • written 3.2 years ago by • 0
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0
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952
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ARACNe Sample Size
grndata GRN ARACNE WGCNA
3.2 years ago Harrsha • 0
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0
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811
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Enrichment in genomic regions
Enrichment clusterPro WGCNA
3.2 years ago María José • 0
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0
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949
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How to create consensus network from SampledBlockwiseModules in WGCNA?
NetworkInference SampledBlockWiseModules WGCNA
3.2 years ago as8020 • 0
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586
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WGCNA consensusMEDdissimilrity
WGCNA
3.3 years ago María José • 0
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3
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2.5k
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WGCNA error
WGCNA
3.4 years ago ayabalbaa1990 • 0
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0
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1.3k
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The gene clusters from the WGCNA dendrogram output are not in order
Clustering WGCNA
3.4 years ago chiwut.wong • 0
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0
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1.0k
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FILTER GENES FOR WGCNA
WGCNA
3.4 years ago María José • 0
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0
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1.1k
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Only 1 gene/ feature is present in module after WGCNA analysis
RNASeq Clustering cluster WGCNA
3.4 years ago chiwut.wong • 0
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2
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2.1k
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WGCNA: Picking soft threshold before and after batch effect correction for Microbial data
wgcna WGCNA
written 3.5 years ago by • 0
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814
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WGCNA analsyis: Cytoscape visualization (Error in recalculating topological overlap)
analsyis WGCNA
3.5 years ago Amazing570 • 0
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0
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1.0k
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WGCNA with large Methylation matrix
wgcna R WGCNA Methylation
3.6 years ago Lorenzo • 0
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1
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976
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adjacency matrix in WGCNA returns NA
Coexpressionnetwork WGCNA
written 3.6 years ago by • 0
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1
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1.8k
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WGCNA: Obtaining a consensus network from sampledBlockwiseModules function output
Network consensus sampledBlockwiseModules resampling WGCNA
updated 3.6 years ago by ★ 3.0k • written 3.7 years ago by ▴ 30
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1
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1.6k
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WGCNA Preservation error
preservation WGCNA
updated 19 months ago by • 0 • written 3.7 years ago by • 0
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1
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1.5k
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Outlier Removal WGCNA
RNASeq WGCNA
updated 3.7 years ago by 6.7k • written 3.7 years ago by ▴ 10
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0
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1.2k
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Removing low count/low variance genes
WGCNA
3.7 years ago Aya • 0
2
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9
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6.0k
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Deseq2 normalization for WGCNA
RNASeq Deseq2 DESeq2 WGCNA
updated 3.4 years ago by 43k • written 3.7 years ago by ▴ 10
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0
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2.1k
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How to choose singed or unsigned network in step-by-step WGCNA
WGCNA
3.8 years ago synat.keam • 0
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1
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1.4k
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Trouble with gene dendrogram
Network RNASeq WGCNA
updated 2.7 years ago by • 0 • written 3.8 years ago by ▴ 10
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3
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2.3k
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Problem getting soft threshold power using WGCNA for RNA-seq data
RNASeq WGCNA
3.8 years ago jms2520 ▴ 10
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1
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1.6k
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Summarising WGCNA data with modules and their corresponding gene ID and statistics
RNASeq WGCNA
3.8 years ago synat.keam • 0
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0
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964
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WGCNA Consensus Module Sign Question
wgcna
3.9 years ago erik.burchard • 0
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2
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1.3k
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WGCA tutorial related question
WGCNA
3.9 years ago wes • 0
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0
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1.2k
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WGCNA error during network construction
WGCNA Network R
3.9 years ago gitanjali • 0
0
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1
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2.0k
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pre-proccessing of TCGA data for WGCNA
TCGAbiolinks WGCNA
updated 4.0 years ago by 43k • written 4.1 years ago by • 0
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0
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874
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WGCNA out of memory
wgcna RNASeq
4.1 years ago zli1 • 0
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2
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2.9k
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WGCNA adjust p value
WGCNA
written 4.1 years ago by ▴ 40
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0
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789
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Working with Binary Categorical Data using WGCNA and Unsigned Networks
WGCNA
4.2 years ago schum266 ▴ 10
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1
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1.7k
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Determining number of genes in each module based on color in WGCNA package
WGCNA
4.2 years ago schum266 ▴ 10
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1
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964
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Query regarding WGCNA module formation
WGCNA RNAseq RNASeqData
updated 4.3 years ago by ▴ 760 • written 4.3 years ago by • 0
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1
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846
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Query regarding WGCNA module
WGCNA
updated 4.3 years ago by ▴ 50 • written 4.3 years ago by • 0
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1
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2.6k
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Removing batch effect by sva or combat and subsequent correlation analysis by WGCNA
WGCNA impute sva
updated 4.3 years ago by ▴ 60 • written 4.3 years ago by • 0
1
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1
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1.5k
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No genes with Module Membership > 0.8
wgcna WGCNA hubgenes
updated 4.5 years ago by ▴ 70 • written 4.7 years ago by ▴ 10
10
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1
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5.2k
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WGCNA: Module preservation vs consensus analysis
WGCNA wgcna
updated 4.5 years ago by ▴ 70 • written 4.6 years ago by ▴ 60
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0
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1.3k
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Consensus wgcna soft threshold for each data
Transcriptomics WGCNA wgcna
4.5 years ago 2323982403 ▴ 60
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0
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1.2k
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Sample size on Differential Network Analysis
coexpression WGCNA
4.5 years ago Hanna ▴ 10
335 results • Page 2 of 7
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Answer: readBam vs read_bam_insert_metrics by James W. MacDonald 68k
Depends on what you mean by input. If you mean to ask if you use `readBam` to generate something to use as an argument to `read_bam_insert_…
Answer: How to construct a BSgenome object from a custom genome assembly using BSgenomeF by James W. MacDonald 68k
There is an example in the help page for `forgeBSgenomePkgFromTwobitFile`. Have you tried emulating that?
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by Gordon Smyth 53k
What you describe sounds a good approach to me. I would also use sample weights (`sample.weights=TRUE` when running `voomLmFit`) and robust…
Comment: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg? by Michael Love 43k
I moved your post from an "answer" to a "comment". I don't know about `offst()` function, what is the scale or direction, or whether you a…
Comment: Average biological replicates in RNA-seq by boczniak767 ▴ 740
@atpoint Should I first standardise data and then average replicates?
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Answer: Limpa Pipeline Order
A: How barcode-plot enrichment is calculated?
A: How barcode-plot enrichment is calculated?
Answer: ROAST compare results with complex design
How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?
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