Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
WGCNA
•
reset
0
votes
0
replies
865
views
Multiple way network preservation
wgcna
2.7 years ago
madzayasodara
• 0
0
votes
0
replies
961
views
WGCNA TOM file empty
WGCNA
TOM
2.8 years ago
gianni.drm
• 0
0
votes
0
replies
1.6k
views
WGCNA Heatmap and Export to Cytoscape Not Working
Cytoscape
Heatmap
heatmaps
WGCNA
2.8 years ago
gianni.drm
• 0
0
votes
1
reply
1.6k
views
WGCNA soft thresholding suggesting a power of 1
independence
thresholding
WGCNA
connectivity
scale
updated 20 months ago by
boczniak767
▴ 740 • written 2.8 years ago by
Kim
• 0
0
votes
1
reply
855
views
In WGCNA which is the matrix on which the eigen decomposition is run to get the module eigen gene
WGCNA
updated 2.8 years ago by
andres.firrincieli
▴ 50 • written 2.8 years ago by
S
• 0
0
votes
0
replies
982
views
Does verboseScatterplot in WGCNA package allow for highlighting a subset of genes
WGCNA
2.8 years ago
S
• 0
0
votes
0
replies
967
views
Problems running WGCNA
WGCNA
2.9 years ago
S
• 0
0
votes
0
replies
795
views
coexpression networks
WGCNA
igraph
3.0 years ago
María José
• 0
0
votes
0
replies
919
views
A question about GWENA R/Bioconductor package
proteomics
GWENA
Proteomics
WGCNA
3.0 years ago
Abdullah
• 0
0
votes
0
replies
1.4k
views
WGCNA: minModuleSize is not responding correctly
Network
minModuleSize
WGCNA
wgcna
3.0 years ago • updated 13 months ago
bioinformaticssrm2011
• 0
2
votes
1
reply
1.3k
views
WGCNA: weird issue of module with a single gene
network
co-expression
WGCNA
updated 3.2 years ago by
andres.firrincieli
▴ 50 • written 3.2 years ago by
ikumar2000
▴ 10
0
votes
1
reply
1.6k
views
WGCNA - Network construction and module detection
gene
Clustering
wgcna
flashclust
updated 3.2 years ago by
andres.firrincieli
▴ 50 • written 3.2 years ago by
Recep
▴ 20
0
votes
0
replies
825
views
MM-GS plot doesn't show any negative correlation
wgcna
3.3 years ago
shubhankar.pawar
• 0
0
votes
1
reply
1.7k
views
WGCNA Export Eigengene Adjacency/Correlation values export
WGCNA
updated 3.3 years ago by
Cannabis Equipment Financing
• 0 • written 3.3 years ago by
803ebee7
• 0
0
votes
0
replies
984
views
ARACNe Sample Size
grndata
GRN
ARACNE
WGCNA
3.4 years ago
Harrsha
• 0
0
votes
0
replies
843
views
Enrichment in genomic regions
Enrichment
clusterPro
WGCNA
3.4 years ago
María José
• 0
0
votes
0
replies
1.0k
views
How to create consensus network from SampledBlockwiseModules in WGCNA?
NetworkInference
SampledBlockWiseModules
WGCNA
3.4 years ago
as8020
• 0
0
votes
0
replies
606
views
WGCNA consensusMEDdissimilrity
WGCNA
3.5 years ago
María José
• 0
1
vote
3
replies
2.5k
views
WGCNA error
WGCNA
3.5 years ago
ayabalbaa1990
• 0
0
votes
0
replies
1.3k
views
The gene clusters from the WGCNA dendrogram output are not in order
Clustering
WGCNA
3.5 years ago
chiwut.wong
• 0
0
votes
0
replies
1.0k
views
FILTER GENES FOR WGCNA
WGCNA
3.5 years ago
María José
• 0
0
votes
0
replies
1.2k
views
Only 1 gene/ feature is present in module after WGCNA analysis
RNASeq
Clustering
cluster
WGCNA
3.6 years ago
chiwut.wong
• 0
0
votes
2
replies
2.2k
views
WGCNA: Picking soft threshold before and after batch effect correction for Microbial data
wgcna
WGCNA
written 3.6 years ago by
bioinformaticssrm2011
• 0
0
votes
0
replies
837
views
WGCNA analsyis: Cytoscape visualization (Error in recalculating topological overlap)
analsyis
WGCNA
3.6 years ago
Amazing570
• 0
0
votes
0
replies
1.1k
views
WGCNA with large Methylation matrix
wgcna
R
WGCNA
Methylation
3.8 years ago
Lorenzo
• 0
0
votes
1
reply
1.0k
views
adjacency matrix in WGCNA returns NA
Coexpressionnetwork
WGCNA
written 3.8 years ago by
APPUS
• 0
0
votes
1
reply
1.9k
views
WGCNA: Obtaining a consensus network from sampledBlockwiseModules function output
Network
consensus
sampledBlockwiseModules
resampling
WGCNA
updated 3.8 years ago by
Peter Langfelder
★ 3.0k • written 3.9 years ago by
Caleb Bostwick
▴ 30
0
votes
1
reply
1.6k
views
WGCNA Preservation error
preservation
WGCNA
updated 22 months ago by
Gail
• 0 • written 3.9 years ago by
Sara
• 0
0
votes
1
reply
1.5k
views
Outlier Removal WGCNA
RNASeq
WGCNA
updated 3.9 years ago by
Vincent J. Carey, Jr.
6.7k • written 3.9 years ago by
jms2520
▴ 10
0
votes
0
replies
1.2k
views
Removing low count/low variance genes
WGCNA
3.9 years ago
Aya
• 0
2
votes
9
replies
6.2k
views
Deseq2 normalization for WGCNA
RNASeq
Deseq2
DESeq2
WGCNA
updated 3.5 years ago by
Michael Love
43k • written 3.9 years ago by
jms2520
▴ 10
0
votes
0
replies
2.2k
views
How to choose singed or unsigned network in step-by-step WGCNA
WGCNA
3.9 years ago
synat.keam
• 0
0
votes
1
reply
1.4k
views
Trouble with gene dendrogram
Network
RNASeq
WGCNA
updated 2.8 years ago by
shuo
• 0 • written 4.0 years ago by
jms2520
▴ 10
0
votes
3
replies
2.3k
views
Problem getting soft threshold power using WGCNA for RNA-seq data
RNASeq
WGCNA
4.0 years ago
jms2520
▴ 10
0
votes
1
reply
1.7k
views
Summarising WGCNA data with modules and their corresponding gene ID and statistics
RNASeq
WGCNA
4.0 years ago
synat.keam
• 0
0
votes
0
replies
997
views
WGCNA Consensus Module Sign Question
wgcna
4.1 years ago
erik.burchard
• 0
0
votes
2
replies
1.3k
views
WGCA tutorial related question
WGCNA
4.1 years ago
wes
• 0
0
votes
0
replies
1.3k
views
WGCNA error during network construction
WGCNA
Network
R
4.1 years ago
gitanjali
• 0
0
votes
1
reply
2.1k
views
pre-proccessing of TCGA data for WGCNA
TCGAbiolinks
WGCNA
updated 4.2 years ago by
Michael Love
43k • written 4.2 years ago by
txtbookir
• 0
0
votes
0
replies
912
views
WGCNA out of memory
wgcna
RNASeq
4.3 years ago
zli1
• 0
0
votes
2
replies
3.0k
views
WGCNA adjust p value
WGCNA
written 4.3 years ago by
jason.taotaotan
▴ 40
0
votes
0
replies
815
views
Working with Binary Categorical Data using WGCNA and Unsigned Networks
WGCNA
4.4 years ago
schum266
▴ 10
1
vote
1
reply
1.7k
views
Determining number of genes in each module based on color in WGCNA package
WGCNA
4.4 years ago
schum266
▴ 10
0
votes
1
reply
1.0k
views
Query regarding WGCNA module formation
WGCNA
RNAseq
RNASeqData
updated 4.4 years ago by
Lluís Revilla Sancho
▴ 760 • written 4.5 years ago by
abhisek001
• 0
0
votes
1
reply
891
views
Query regarding WGCNA module
WGCNA
updated 4.5 years ago by
andres.firrincieli
▴ 50 • written 4.5 years ago by
abhisek001
• 0
0
votes
1
reply
2.7k
views
Removing batch effect by sva or combat and subsequent correlation analysis by WGCNA
WGCNA
impute
sva
updated 4.5 years ago by
sebastian.lobentanzer
▴ 60 • written 4.5 years ago by
chiwut.wong
• 0
1
vote
1
reply
1.6k
views
No genes with Module Membership > 0.8
wgcna
WGCNA
hubgenes
updated 4.6 years ago by
Vivek
▴ 70 • written 4.8 years ago by
Hanna
▴ 10
10
votes
1
reply
5.3k
views
WGCNA: Module preservation vs consensus analysis
WGCNA
wgcna
updated 4.6 years ago by
Vivek
▴ 70 • written 4.7 years ago by
Colari19
▴ 60
0
votes
0
replies
1.3k
views
Consensus wgcna soft threshold for each data
Transcriptomics
WGCNA
wgcna
4.6 years ago
2323982403
▴ 60
0
votes
0
replies
1.2k
views
Sample size on Differential Network Analysis
coexpression
WGCNA
4.7 years ago
Hanna
▴ 10
335 results • Page
2 of 7
Recent ...
Replies
Comment: Getting a large intercept with DESeq2
by
James W. MacDonald
68k
As a trivial example, consider this: ``` > model.matrix(~Treatment, data.frame(Treatment = factor(rep(1:3, each = 4)))) (Intercept) Tre…
Answer: Getting a large intercept with DESeq2
by
James W. MacDonald
68k
The default parameterization in R is a treatment-contrasts parameterization that sets one of your groups as the baseline. So the intercept …
Answer: Must I do pseudobulk analysis on Cell Surface Protein Labeling data of Single C
by
ATpoint
★ 5.0k
There is no "MUST", but pseudobulk aggregation is beneficial to a) enable use of tested and robust methods such as limma (though it could u…
Answer: Post translational modifications and phosphoproteomics in limpa?
by
Gordon Smyth
53k
Yes, we use limpa for PTMs ourselves. I assume your data is preprocessed so that each row corresponds to a PTM. You replace dpcQuant() with…
Comment: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
by
Matthew Thornton
▴ 380
WOW! Thank you so much for the information. I will do this.
Votes
Answer: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
Using edgeR or DESeq2 to analyze allele-specific expression?
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Awards
• All
Popular Question
to
Hervé Pagès
16k
Popular Question
to
shepherl
4.2k
Scholar
to
James W. MacDonald
68k
Popular Question
to
Daniel Cameron
▴ 40
Popular Question
to
Peter Hickey
▴ 760
Locations
• All
United States,
25 minutes ago
United States,
25 minutes ago
United States,
28 minutes ago
Barcelona, Spain,
29 minutes ago
Spain,
36 minutes ago
Traffic: 1426 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6