Showing : arrayQualityMetrics • reset
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708
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Problem with ArrayQualityMetrics PCA plot
arrayQualityMetrics
updated 2.4 years ago by ★ 13k • written 2.4 years ago by • 0
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3
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1.8k
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Error arrayQualityMetrics
arrayQualityMetrics
updated 2.5 years ago by ★ 6.5k • written 2.5 years ago by • 0
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1
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779
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Is it possible to run arrayQualitymetrics or some similar package on a HTAFeatureSet?
arrayQualityMetrics oligo
updated 3.6 years ago by 65k • written 3.6 years ago by ▴ 10
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582
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Use arrayQualityMetrics package normalized cel file the number of samples has been reduced
normalization arrayQualityMetrics
updated 4.6 years ago by 65k • written 4.6 years ago by • 0
1
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3
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2.4k
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Installing arrayQualityMetrics: ERROR: lazy loading failed
arrayqualitymetrics beadarray
7.8 years ago • updated 4.8 years ago Lluís Revilla Sancho ▴ 730
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arrayQualityMetrics with count table of RNA-Seq data - how to make ExpressionSetobject or ExpressionSetIllumina object?
arrayQualityMetrics RNA-Seq ExpressionSetobject ExpressionSetIllumina
4.8 years ago Mabeyer • 0
4
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4
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1.1k
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arrayQualityMetrics in reading HTAfeatureSet read by oligo package
microarray hta2.0 arrayqualitymetrics
updated 5.4 years ago by ★ 6.5k • written 5.4 years ago by ▴ 10
2
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1
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1.4k
views
arrayQualityMetrics: "intgroup" error, groups dropped from x$pData.
arrayqualitymetrics R
updated 6.4 years ago by ★ 6.5k • written 6.4 years ago by ▴ 30
1
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3
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1.1k
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Error in arrayQualityMetrics
arrayQualityMetrics
updated 6.6 years ago by ★ 6.5k • written 6.6 years ago by • 0
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2
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1.4k
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Quality control for Affymetrix GeneChip Mouse Gene 2.0 ST Array
qc qualitycontrol arrayqualitymetrics mouse gene st 2.0 affymetrix
updated 6.7 years ago by 65k • written 6.7 years ago by • 0
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2
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1.1k
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Bug in cleanUpPhenoData
arrayQualityMetrics
updated 7.4 years ago by ★ 13k • written 7.4 years ago by • 0
10
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10
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3.8k
views
arrayQualityMetrics does not complete successfully
arrayqualitymetrics
updated 7.5 years ago by ▴ 10 • written 8.2 years ago by ▴ 10
2
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0
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1.1k
views
Quality Assessment of one color Agilent arrays?
limma one colour agilent microarrays qualitycontrol arrayqualitymetrics
7.5 years ago Bouzid.a ▴ 20
0
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2
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1.1k
views
array Quality Metrics
arrayqualitymetrics
updated 7.6 years ago by ★ 13k • written 7.6 years ago by ▴ 20
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5
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1.2k
views
quality control analysis
arrayqualitymetrics
updated 7.6 years ago by 65k • written 7.6 years ago by ▴ 20
6
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11
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3.7k
views
arrayQualityMetrics: "All SVG style attribute must have length 1" and other errors
arrayqualitymetrics svg software error
updated 7.8 years ago by ▴ 40 • written 9.4 years ago by ▴ 200
0
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0
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1.2k
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argument "intgroup" is missing in arrayQualityMetrics
arrayQualityMetrics
8.0 years ago 13117882295 • 0
1
vote
2
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2.4k
views
making ExpressionSet from RGList via NChannelSet for use with 'sva'
biobase convert sva ringo arrayqualitymetrics
updated 8.1 years ago by 50k • written 8.1 years ago by • 0
2
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4
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2.3k
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arrayQualityMetrics error: Error: Unknown parameters: cex.axis
affy microarray arrayqualitymetrics
updated 8.3 years ago by ★ 13k • written 8.3 years ago by ▴ 30
1
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1
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1.3k
views
arrayQualityMetrics for outlier detection
arrayQualityMetrics Microarray Outlier
updated 8.4 years ago by ★ 13k • written 8.4 years ago by ▴ 10
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3
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1.7k
views
Unable to execute java by using the Rscript
arrayqualitymetrics java r
8.9 years ago aaryan • 0
4
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6
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4.5k
views
arrayQualityMetrics with DESeq2
arrayqualitymetrics deseq2 sample outliers
9.3 years ago rachelwright8 ▴ 10
4
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3
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1.5k
views
arrayQualityMetrics error with one color array and log transform
arrayqualitymetrics bugs error
updated 9.5 years ago by 65k • written 9.5 years ago by • 0
0
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0
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1.2k
views
in-group missing arrayQualityMetrics()
arrayQualityMetrics arrayQualityMetrics
9.9 years ago Wolfgang Huber ★ 13k
0
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4
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1.4k
views
svg error in arrayQualityMetrics
GO arrayQualityMetrics GO arrayQualityMetrics
updated 10.1 years ago by ▴ 750 • written 10.1 years ago by ▴ 300
0
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1
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1.5k
views
Problem with NChannelSet objects using Agilent Data with arrayQualityMetrics package
arrayQualityMetrics ArrayExpress arrayQualityMetrics ArrayExpress
updated 10.2 years ago by ★ 13k • written 10.2 years ago by ▴ 20
0
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4
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2.5k
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in-group missing arrayQualityMetrics()
arrayQualityMetrics arrayQualityMetrics
updated 10.2 years ago by ★ 13k • written 10.2 years ago by ★ 13k
0
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996
views
maQualityPlots: cannot coerce type 'S4' to vector of type
arrayQuality arrayQualityMetrics arrayQuality arrayQualityMetrics
10.3 years ago Agnes Paquet ▴ 30
3
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1
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1.9k
views
arrayQualityMetrics for Agilent one color data
Normalization limma arrayQualityMetrics Normalization limma arrayQualityMetrics
updated 10.4 years ago by 65k • written 10.4 years ago by ▴ 50
0
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1
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1.7k
views
arrayQualityMetrics - undefined columns selected
Microarray arrayQualityMetrics Microarray arrayQualityMetrics
updated 10.5 years ago by ★ 13k • written 10.5 years ago by ▴ 50
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3
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1.5k
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arrayQualityMetrics does not produce interactive plots
arrayQualityMetrics arrayQualityMetrics
updated 10.6 years ago by ▴ 10 • written 10.6 years ago by ★ 13k
0
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1
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929
views
arrayQualityMetrics: How to observe Hoeffding\'s statistic Da in aqm.maplot object?
arrayQualityMetrics arrayQualityMetrics
updated 10.6 years ago by ★ 13k • written 10.6 years ago by ★ 13k
0
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1
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1.2k
views
XPS package QC data
affy arrayQualityMetrics xps affy arrayQualityMetrics xps
10.7 years ago cstrato ★ 3.9k
0
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3
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1.4k
views
XPS package QC data
affy arrayQualityMetrics xps affy arrayQualityMetrics xps
updated 10.7 years ago by ★ 3.9k • written 10.7 years ago by ▴ 40
0
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3
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1.0k
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need help regarding quality assessment of raw data
arrayQualityMetrics arrayQualityMetrics
updated 11.3 years ago by ★ 13k • written 11.3 years ago by ▴ 20
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2
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1.8k
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arrayQualityMetrics and lumi - failure to load in R2.15.1 windows
lumi arrayQualityMetrics lumi arrayQualityMetrics
updated 11.4 years ago by ★ 13k • written 11.4 years ago by ▴ 480
0
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3
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1.3k
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arrayQualityMetrics run as batch-job: unable to start device PNG
arrayQualityMetrics arrayQualityMetrics
updated 11.5 years ago by 65k • written 11.5 years ago by ▴ 20
0
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8
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2.4k
views
CDF for GeneChip miRNA 2 array - Is there a miRNA 3 CDF?
miRNA GO cdf affy arrayQualityMetrics miRNA GO cdf affy arrayQualityMetrics
updated 11.5 years ago by 65k • written 11.5 years ago by ▴ 290
0
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1
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1.0k
views
missing figure text in arrayQualityMetrics
arrayQualityMetrics arrayQualityMetrics
updated 11.8 years ago by ★ 13k • written 11.8 years ago by ▴ 90
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4
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1.4k
views
Printing arrayQualityMetrics report
convert arrayQualityMetrics convert arrayQualityMetrics
updated 11.9 years ago by ★ 13k • written 11.9 years ago by ▴ 280
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2
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1.4k
views
reading single channel Agilent data with limma [was arrayQualityMetrics d...
affy limma arrayQualityMetrics affy limma arrayQualityMetrics
11.9 years ago Alogmail2@aol.com ▴ 90
0
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1
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1.4k
views
reading single channel Agilent data with limma [was arrayQualityMetrics doesn't work...]
affy limma arrayQualityMetrics affy limma arrayQualityMetrics
updated 11.9 years ago by ★ 13k • written 11.9 years ago by 50k
0
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0
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1.1k
views
arrayQualityMetrics error with MAList
Normalization convert arrayQualityMetrics Normalization convert arrayQualityMetrics
11.9 years ago Daniel Aaen Hansen ▴ 90
0
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0
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1.1k
views
arrayQualityMetrics error with MAList
Normalization convert arrayQualityMetrics Normalization convert arrayQualityMetrics
12.1 years ago Wolfgang Huber ★ 13k
0
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0
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1.1k
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DESeq countDataSets and arrayQualityMetrics (was: Re: DESeq estimateDispersion options for lower depth miRNA-seq)
Genetics Biobase arrayQualityMetrics DESeq Genetics Biobase arrayQualityMetrics DESeq
12.1 years ago Wolfgang Huber ★ 13k
0
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1
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1.1k
views
DESeq estimateDispersion options for lower depth miRNA-seq
Genetics arrayQualityMetrics DESeq Genetics arrayQualityMetrics DESeq
updated 12.1 years ago by ★ 13k • written 12.1 years ago by ▴ 50
0
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8
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1.7k
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Problems using arrayQualityMetrics
Cancer arrayQualityMetrics Cancer arrayQualityMetrics
12.1 years ago Rosalind Cutts ▴ 20
0
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1
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1.1k
views
for running arrayQualityMetrics
Preprocessing arrayQualityMetrics Preprocessing arrayQualityMetrics
updated 12.1 years ago by ★ 13k • written 12.1 years ago by ★ 4.3k
1
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2
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2.6k
views
arrayQualityMetrics unable to find an inherited method for function \"platformspecific\", for signature \"character\"
arrayQualityMetrics arrayQualityMetrics
12.1 years ago Guest User ★ 13k
0
votes
6
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1.4k
views
arrayQualityMetrics error with MAList
convert arrayQualityMetrics convert arrayQualityMetrics
updated 12.2 years ago by ★ 13k • written 12.2 years ago by ▴ 10
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Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 30
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
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Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
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