Showing : arrayqualitymetrics • reset
0
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975
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Problem with ArrayQualityMetrics PCA plot
arrayQualityMetrics
updated 3.3 years ago by ★ 13k • written 3.4 years ago by • 0
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3
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2.3k
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Error arrayQualityMetrics
arrayQualityMetrics
updated 3.4 years ago by ★ 6.6k • written 3.4 years ago by • 0
1
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1
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990
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Is it possible to run arrayQualitymetrics or some similar package on a HTAFeatureSet?
arrayQualityMetrics oligo
updated 4.5 years ago by 68k • written 4.5 years ago by ▴ 10
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1
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770
views
Use arrayQualityMetrics package normalized cel file the number of samples has been reduced
normalization arrayQualityMetrics
updated 5.6 years ago by 68k • written 5.6 years ago by • 0
1
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3
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2.8k
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Installing arrayQualityMetrics: ERROR: lazy loading failed
arrayqualitymetrics beadarray
8.8 years ago • updated 5.7 years ago Lluís Revilla Sancho ▴ 760
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905
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arrayQualityMetrics with count table of RNA-Seq data - how to make ExpressionSetobject or ExpressionSetIllumina object?
arrayQualityMetrics RNA-Seq ExpressionSetobject ExpressionSetIllumina
5.8 years ago Mabeyer • 0
4
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4
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1.4k
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arrayQualityMetrics in reading HTAfeatureSet read by oligo package
microarray hta2.0 arrayqualitymetrics
updated 6.3 years ago by ★ 6.6k • written 6.3 years ago by ▴ 10
2
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1
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1.7k
views
arrayQualityMetrics: "intgroup" error, groups dropped from x$pData.
arrayqualitymetrics R
updated 7.3 years ago by ★ 6.6k • written 7.3 years ago by ▴ 30
1
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3
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1.4k
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Error in arrayQualityMetrics
arrayQualityMetrics
updated 7.5 years ago by ★ 6.6k • written 7.5 years ago by • 0
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2
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1.8k
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Quality control for Affymetrix GeneChip Mouse Gene 2.0 ST Array
qc qualitycontrol arrayqualitymetrics mouse gene st 2.0 affymetrix
updated 7.6 years ago by 68k • written 7.6 years ago by • 0
0
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2
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1.4k
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Bug in cleanUpPhenoData
arrayQualityMetrics
updated 8.3 years ago by ★ 13k • written 8.3 years ago by • 0
10
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10
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4.3k
views
arrayQualityMetrics does not complete successfully
arrayqualitymetrics
updated 8.4 years ago by ▴ 10 • written 9.1 years ago by ▴ 10
2
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0
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1.3k
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Quality Assessment of one color Agilent arrays?
limma one colour agilent microarrays qualitycontrol arrayqualitymetrics
8.4 years ago Bouzid.a ▴ 20
0
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2
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1.3k
views
array Quality Metrics
arrayqualitymetrics
updated 8.5 years ago by ★ 13k • written 8.5 years ago by ▴ 20
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5
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1.5k
views
quality control analysis
arrayqualitymetrics
updated 8.6 years ago by 68k • written 8.6 years ago by ▴ 20
6
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11
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4.2k
views
arrayQualityMetrics: "All SVG style attribute must have length 1" and other errors
arrayqualitymetrics svg software error
updated 8.8 years ago by ▴ 40 • written 10.3 years ago by ▴ 200
0
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0
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1.4k
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argument "intgroup" is missing in arrayQualityMetrics
arrayQualityMetrics
8.9 years ago 13117882295 • 0
1
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2
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2.8k
views
making ExpressionSet from RGList via NChannelSet for use with 'sva'
biobase convert sva ringo arrayqualitymetrics
updated 9.0 years ago by 52k • written 9.1 years ago by • 0
2
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4
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2.6k
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arrayQualityMetrics error: Error: Unknown parameters: cex.axis
affy microarray arrayqualitymetrics
updated 9.2 years ago by ★ 13k • written 9.2 years ago by ▴ 30
1
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1
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1.6k
views
arrayQualityMetrics for outlier detection
arrayQualityMetrics Microarray Outlier
updated 9.4 years ago by ★ 13k • written 9.4 years ago by ▴ 10
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3
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1.9k
views
Unable to execute java by using the Rscript
arrayqualitymetrics java r
9.8 years ago aaryan • 0
4
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6
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4.8k
views
arrayQualityMetrics with DESeq2
arrayqualitymetrics deseq2 sample outliers
10.2 years ago rachelwright8 ▴ 10
4
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3
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1.7k
views
arrayQualityMetrics error with one color array and log transform
arrayqualitymetrics bugs error
updated 10.4 years ago by 68k • written 10.4 years ago by • 0
0
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0
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1.3k
views
in-group missing arrayQualityMetrics()
arrayQualityMetrics arrayQualityMetrics
10.8 years ago Wolfgang Huber ★ 13k
0
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4
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1.6k
views
svg error in arrayQualityMetrics
GO arrayQualityMetrics GO arrayQualityMetrics
updated 11.1 years ago by ▴ 750 • written 11.1 years ago by ▴ 300
0
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1
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1.7k
views
Problem with NChannelSet objects using Agilent Data with arrayQualityMetrics package
arrayQualityMetrics ArrayExpress arrayQualityMetrics ArrayExpress
updated 11.1 years ago by ★ 13k • written 11.1 years ago by ▴ 20
0
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4
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2.6k
views
in-group missing arrayQualityMetrics()
arrayQualityMetrics arrayQualityMetrics
updated 11.2 years ago by ★ 13k • written 11.2 years ago by ★ 13k
0
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0
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1.2k
views
maQualityPlots: cannot coerce type 'S4' to vector of type
arrayQuality arrayQualityMetrics arrayQuality arrayQualityMetrics
11.2 years ago Agnes Paquet ▴ 30
3
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1
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2.1k
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arrayQualityMetrics for Agilent one color data
Normalization limma arrayQualityMetrics Normalization limma arrayQualityMetrics
updated 11.3 years ago by 68k • written 11.3 years ago by ▴ 50
0
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1
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1.9k
views
arrayQualityMetrics - undefined columns selected
Microarray arrayQualityMetrics Microarray arrayQualityMetrics
updated 11.5 years ago by ★ 13k • written 11.5 years ago by ▴ 50
0
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3
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1.7k
views
arrayQualityMetrics does not produce interactive plots
arrayQualityMetrics arrayQualityMetrics
updated 11.5 years ago by ▴ 10 • written 11.5 years ago by ★ 13k
0
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1
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1.1k
views
arrayQualityMetrics: How to observe Hoeffding\'s statistic Da in aqm.maplot object?
arrayQualityMetrics arrayQualityMetrics
updated 11.5 years ago by ★ 13k • written 11.5 years ago by ★ 13k
0
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1
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1.4k
views
XPS package QC data
affy arrayQualityMetrics xps affy arrayQualityMetrics xps
11.6 years ago cstrato ★ 3.9k
0
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3
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1.6k
views
XPS package QC data
affy arrayQualityMetrics xps affy arrayQualityMetrics xps
updated 11.6 years ago by ★ 3.9k • written 11.6 years ago by ▴ 40
0
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3
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1.3k
views
need help regarding quality assessment of raw data
arrayQualityMetrics arrayQualityMetrics
updated 12.2 years ago by ★ 13k • written 12.2 years ago by ▴ 20
0
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2
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2.0k
views
arrayQualityMetrics and lumi - failure to load in R2.15.1 windows
lumi arrayQualityMetrics lumi arrayQualityMetrics
updated 12.4 years ago by ★ 13k • written 12.4 years ago by ▴ 480
0
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3
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1.6k
views
arrayQualityMetrics run as batch-job: unable to start device PNG
arrayQualityMetrics arrayQualityMetrics
updated 12.4 years ago by 68k • written 12.4 years ago by ▴ 20
0
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8
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2.7k
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CDF for GeneChip miRNA 2 array - Is there a miRNA 3 CDF?
miRNA GO cdf affy arrayQualityMetrics miRNA GO cdf affy arrayQualityMetrics
updated 12.4 years ago by 68k • written 12.4 years ago by ▴ 290
0
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1
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1.2k
views
missing figure text in arrayQualityMetrics
arrayQualityMetrics arrayQualityMetrics
updated 12.8 years ago by ★ 13k • written 12.8 years ago by ▴ 90
0
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4
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1.6k
views
Printing arrayQualityMetrics report
convert arrayQualityMetrics convert arrayQualityMetrics
updated 12.8 years ago by ★ 13k • written 12.8 years ago by ▴ 280
0
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2
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1.7k
views
reading single channel Agilent data with limma [was arrayQualityMetrics d...
affy limma arrayQualityMetrics affy limma arrayQualityMetrics
12.8 years ago Alogmail2@aol.com ▴ 90
0
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1
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1.7k
views
reading single channel Agilent data with limma [was arrayQualityMetrics doesn't work...]
affy limma arrayQualityMetrics affy limma arrayQualityMetrics
updated 12.8 years ago by ★ 13k • written 12.8 years ago by 52k
0
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0
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1.3k
views
arrayQualityMetrics error with MAList
Normalization convert arrayQualityMetrics Normalization convert arrayQualityMetrics
12.8 years ago Daniel Aaen Hansen ▴ 90
0
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0
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1.3k
views
arrayQualityMetrics error with MAList
Normalization convert arrayQualityMetrics Normalization convert arrayQualityMetrics
13.0 years ago Wolfgang Huber ★ 13k
0
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0
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1.3k
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DESeq countDataSets and arrayQualityMetrics (was: Re: DESeq estimateDispersion options for lower depth miRNA-seq)
Genetics Biobase arrayQualityMetrics DESeq Genetics Biobase arrayQualityMetrics DESeq
13.0 years ago Wolfgang Huber ★ 13k
0
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1
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1.2k
views
DESeq estimateDispersion options for lower depth miRNA-seq
Genetics arrayQualityMetrics DESeq Genetics arrayQualityMetrics DESeq
updated 13.0 years ago by ★ 13k • written 13.0 years ago by ▴ 50
0
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8
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2.0k
views
Problems using arrayQualityMetrics
Cancer arrayQualityMetrics Cancer arrayQualityMetrics
13.0 years ago Rosalind Cutts ▴ 20
0
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1
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1.3k
views
for running arrayQualityMetrics
Preprocessing arrayQualityMetrics Preprocessing arrayQualityMetrics
updated 13.1 years ago by ★ 13k • written 13.1 years ago by ★ 4.3k
1
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2
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2.8k
views
arrayQualityMetrics unable to find an inherited method for function \"platformspecific\", for signature \"character\"
arrayQualityMetrics arrayQualityMetrics
13.1 years ago Guest User ★ 13k
0
votes
6
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1.7k
views
arrayQualityMetrics error with MAList
convert arrayQualityMetrics convert arrayQualityMetrics
updated 13.1 years ago by ★ 13k • written 13.1 years ago by ▴ 10
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Comment: Question about using LRT test for time course experiments with DESeq2 by Rob • 0
Just to pick up on this thread as its really helpful for understanding the LRT test. The LRT test is given any genes that change within the…
Comment: Support of parquet files for on-disk Bioconductor objects by btom66245 • 0
@[doodle jump][1] I encountered the exact same problem on both Mac and Windows. Thank you for your sharing. [1]: https://doodlejump24.…
Comment: Error in H5Dclose(h5dataset) when trying to read in kallisto h5 files by Sofia • 0
I am not sure this has anything to do with it but i had to run the following as tximport wouldn't allow me to import abundance_1.h5 files t…
Comment: Error in H5Dclose(h5dataset) when trying to read in kallisto h5 files by Sofia • 0
1 2 3 Error in H5Dclose(h5dataset) : HDF5. Dataset. Unable to decrement reference count. ``` > traceback() 5: H5Dclose(h5dataset) 4: rhd…
Comment: DESeq2 model - How to test case/control time course model when taking account wi by wuwenhui2 • 0
Thanks, I figured it out.
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what the test method for enrichGO in clusterProfiler?
A: single-cells RNA-seq analysis by MAST with unbalanced group size
Comment: plyranges: find exact GRanges match keeping metadata columns
Answer: Help with the code for "BiocNeighbors::generic_find_knn() function used by scran
Is it possible to speed up VariantAnnotation's rowRanges function when converting to a dataframe?
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