Showing : atacseqqc • reset
1
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2
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9.3k
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Interpreting TSS Enrichment Score Summary
atacseq atacseqqc tss enrichment
updated 3.7 years ago by ★ 1.3k • written 3.8 years ago by • 0
11
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21
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5.1k
views
How about our ATAC-Seq data quality analyzed by ATACseqQC
ATACseqQC ATAC-Seq quality analysis fragment size distribution library complexity
updated 5.3 years ago by ★ 4.3k • written 5.3 years ago by ▴ 20
5
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9
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3.8k
views
mm10 phastCons data for use with ATACseqQC
ATACseqQC bsgenome phastcons rtracklayer
updated 7.0 years ago by ★ 1.3k • written 7.0 years ago by ▴ 10
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9
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3.6k
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No peak corresponding to the nucleosome-free regions is observed in Fragment size distribution of ATAC-seq
ATACseqQC Fragmentsizedistribution ATAC-seq
3.1 years ago • updated 3.0 years ago Xiaojie Cheng • 0
1
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11
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2.3k
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ATAC-QC shiftGAlignmentsList function
ATAC-seq ATACseqQC
updated 4.8 years ago by ★ 4.3k • written 4.8 years ago by • 0
0
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7
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2.2k
views
ATACseqQC memory overflow issue
atac-seq software error atacseqqc
updated 6.2 years ago by • 0 • written 6.3 years ago by ▴ 10
0
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4
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1.9k
views
ATACseqQC R package for QC scores (TSS, FRIP, NFR, IDR)
ATACseqQC atacseq R
updated 3.7 years ago by ★ 1.3k • written 3.7 years ago by • 0
0
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6
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1.9k
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atacseqQC error while splittin the bamfile
ATACseqQC ATAC-seq error split bam file
updated 5.0 years ago by • 0 • written 5.0 years ago by ▴ 10
0
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7
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1.8k
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ATACseqQC shiftGAlignmentsList leads to (all(elementNROWS)>3) is not TRUE error
ATACseqQC ATAC ATACseq software error Tutorial
updated 4.9 years ago by ★ 13k • written 4.9 years ago by • 0
0
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5
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1.7k
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ATACseqQC installation fails at shiny step
ATACseqQC
updated 4.7 years ago by 65k • written 4.7 years ago by • 0
0
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1
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1.7k
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Issue installing packages ATACseqQC and GO.db
GO.db biocinstaller package installation atacseqqc
updated 6.2 years ago by ★ 1.3k • written 6.2 years ago by • 0
0
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7
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1.6k
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ATACseqQC splitGAlignmentsByCut: strand values must be in '+' '-' '*'
ATACseqQC R
updated 4.8 years ago by ★ 4.3k • written 4.8 years ago by • 0
0
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9
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1.5k
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use factorFootprints function in ATACseqQC to get DNA footprinting for certain gene region
ATACseqQC
updated 5.8 years ago by ★ 4.3k • written 5.8 years ago by ▴ 10
2
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5
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1.5k
views
The meaning of results produced by the bamQC function implemented in the ATACseqQC
ATACseqQC bamQC ATAC-Seq totalQNAMEs MAPQ
updated 5.2 years ago by ★ 4.3k • written 5.2 years ago by ▴ 20
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5
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1.4k
views
ATACSeqQC - error when splitting files using mm10
atacseqqc atac-seq R bioconductor rsamtools
updated 4.0 years ago by ★ 3.9k • written 4.0 years ago by • 0
1
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7
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1.4k
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TSSEscore function in ATACseqQC package
ATACseqQC
2.3 years ago Liu Yu-Yu • 0
1
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2
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1.4k
views
ATACseqQC function bamSplit returns error when input .bam is from mouse
ATACseqQC
4.8 years ago beiting ▴ 30
0
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2
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1.4k
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*** caught segfault *** address 0xffffffff9a378e20, cause 'memory not mapped'
ATACseqQC
2.9 years ago Nolan • 0
1
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4
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1.2k
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How to use a fimo BED output as GRanges object in factorFootprints from ATACseqQC
ATACseqQC
updated 3.7 years ago by ★ 4.3k • written 3.7 years ago by ▴ 10
0
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3
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1.1k
views
package for ATACseq data analysis
SequencingData ATACSeq ATACseqQC
updated 21 months ago by ★ 5.2k • written 2.6 years ago by ▴ 30
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2
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1.1k
views
ATACseqQC needs too much memory
ATACseqQC
updated 6.4 years ago by ★ 4.3k • written 6.4 years ago by • 0
0
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1
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1.0k
views
ATACseqQC: a few questions
ATACseqQC
updated 5.9 years ago by ★ 4.3k • written 5.9 years ago by • 0
0
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3
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1.0k
views
Compare the DNA footprinting between different samples when using ATACseqQC
atacseqqc
updated 5.8 years ago by ★ 1.3k • written 5.8 years ago by ▴ 10
0
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2
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995
views
factorFootprints, bindingSites and Profile.segmentation
ATACSeqQC factorFootprints
updated 4.8 years ago by ★ 4.3k • written 4.8 years ago by • 0
0
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1
reply
992
views
ATAC-QC fragSizeDist function
ATAC-seq ATACseqQC
updated 4.8 years ago by ★ 4.3k • written 4.8 years ago by • 0
1
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4
replies
977
views
Subsampling when adjusting the read start sites in the ATACseqQC guide
atacseqqc r
3.8 years ago Arpi Beshlikyan • 0
0
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1
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916
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ATACseqQC questions in R language
atacseqqc
updated 5.9 years ago by ★ 1.3k • written 5.9 years ago by • 0
0
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0
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783
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Enough cell number or not based on library complexity evaluation by ATACseqQC?
ATACseqQC ATAC-Seq Library complexity estimateLibComplexity
5.1 years ago Gary ▴ 20
0
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7
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677
views
ATACseqQC shiftGAlignmentsList() problem
ATACseqQC ATACSeq
updated 10 weeks ago by ▴ 10 • written 5 months ago by • 0
0
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0
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599
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[ATACseqQC] NA values in sigs makes heatmap not completed
ATACseqQC ATACSeq
2.2 years ago hyjforesight • 0
0
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1
reply
573
views
Error in ATACseqQC bamQC analysis
ATACSeq ATACseqQC
updated 16 months ago by ★ 1.3k • written 16 months ago by • 0
0
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0
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489
views
NAs in TSSE for certain windows
ATACseqQC
2.7 years ago red_bricks ▴ 50
0
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0
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461
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ATACseqQC function fragSizeDist returns error
fragSizeDist ATACseqQC
2.7 years ago xuyao15927402897 • 0
1
vote
1
reply
195
views
Error with BSgenome, wanting to analyse non-model species with ATACseqQC
ATACseqQC
updated 9 weeks ago by 65k • written 9 weeks ago by • 0
0
votes
0
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124
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Issue with shiftGAlignmentsList() in ATACseqQC after updating
R ATACseqQC
10 weeks ago danalvoronov ▴ 10
35 results • Page 1 of 1
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Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db") by Marcel Ramos 690
`BiocManager` does not install local packages. It only installs Bioconductor, CRAN, and GitHub ones. You should install local packages w…
Comment: error running enricher from clusterprofiler by Yael • 0
It worked!!! Thanks alot, i think something in the gene_list wasnt right... Thanks agian
Comment: Create protein sequences including variants from a VCF file by Yun • 0
This cannot work for a SNV file, since `injectSNPs` need a `SNPlocs` object
Comment: Can log2cpm be used for proteomics data normalization? by Daniel • 0
Thank you for the quick reply and I apologize for it being on the wrong thread but the "post tag" function wasn't working properly.
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db") by Patadù ▴ 10
I have arranged the code again following the other post and also the script you suggested. Now, I managed to install `org.Vdahliae.eg.db`. …
Votes
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Answer: Trim/Filter out-of-bounds GRanges
Comment: How to correctly adjust for gender in edgeR
Create protein sequences including variants from a VCF file
A: DEXSeq design formula
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