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bioc-devel
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reset
1
vote
2
replies
1.8k
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Segmentation Fault with development versions of R, Bioconductor, and DropletUtils when processing output of CellRanger 3.0.2
DropletUtils
Bioc-devel
6.5 years ago
Matthew Thornton
▴ 380
1
vote
5
replies
1.7k
views
[DEVELOPMENT] Trying to use development version of Bioconductor, needs R 3.6?...
developers
bioc-devel
6.9 years ago
Casper van Mourik
• 0
0
votes
2
replies
1.8k
views
Circular dependencies between data and software packages: how best to avoid
developers
bioc-devel
package development
circular dependencies
updated 7.0 years ago by
shepherl
4.2k • written 7.0 years ago by
Tim Triche
★ 4.2k
3
votes
1
reply
2.7k
views
News:
Latin American BioC Developers Workshop 2018
bioconductor
developers
bioc-devel
News
7.5 years ago
Alejandro Reyes
★ 1.9k
6
votes
3
replies
3.3k
views
How to solve "WARNING: Add non-empty \value" with roxygen tags
bioccheck
roxygen2
warning
bioc-devel
package development
updated 7.9 years ago by
Lluís Revilla Sancho
▴ 760 • written 7.9 years ago by
Paul Brennan
▴ 10
0
votes
0
replies
2.7k
views
Tutorial:
Using Subversion to update /devel branch of Bioconductor package
subversion
bioc-devel
package development
usedevel
Tutorial
8.2 years ago
Bohdan Khomtchouk
▴ 10
3
votes
2
replies
1.5k
views
Changing lead developer for existing package
developers
bioc-devel
updated 8.5 years ago by
Martin Morgan
25k • written 8.5 years ago by
mlbendall
• 0
2
votes
8
replies
4.5k
views
Unable to load/install rtracklayer (v1.33.2) on OS X (possibly SSL-related?)
rtracklayer
bioc-devel
ssl
openssl
updated 9.4 years ago by
Michael Lawrence
★ 11k • written 9.4 years ago by
Peter Hickey
▴ 760
1
vote
3
replies
2.1k
views
Are there any bioconductor github mirrors for data packages?
software
bioc-devel
developers
R
updated 9.9 years ago by
Dan Tenenbaum
★ 8.2k • written 9.9 years ago by
MarcinKosiński
• 0
3
votes
6
replies
2.8k
views
Bioconductor Docker Development container
docker
bioc-devel
updated 10.4 years ago by
Dan Tenenbaum
★ 8.2k • written 10.4 years ago by
Nathan Sheffield
▴ 10
5
votes
3
replies
2.1k
views
BiocCheck: REQUIRED: vignette sources in vignettes/ directory (for custom vignettebuilder)
package
bioconductor
bioc-devel
developers
10.4 years ago
flying-sheep
▴ 10
0
votes
2
replies
2.7k
views
Error reading vcf converted from bed file
readvcf
plink
file conversion
bed
bioc-devel
10.6 years ago
mjsduncan
• 0
0
votes
1
reply
2.3k
views
installation of GenomicRanges package in Rdevel fails
installation
bioc-devel
updated 11.0 years ago by
Martin Morgan
25k • written 11.0 years ago by
Tiphaine Martin
▴ 40
1
vote
1
reply
2.0k
views
Using hash packages with package:rtracklayer, GenomicRanges, Gviz, IRanges, biomaRt conflict
software error
bioc-devel
updated 11.0 years ago by
Martin Morgan
25k • written 11.0 years ago by
Tiphaine Martin
▴ 40
14 results • Page
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Comment: Help with defining groups
by
Phinney, Brett
▴ 10
I got it working , thank you!!!
Comment: Check removeBatchEffect effectiveness
by
massimo
• 0
I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…
Comment: Error Loading Experiment from SimBenchData Package
by
ksankaran
• 0
Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
by
ATpoint
★ 5.0k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes
by
ATpoint
★ 5.0k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
Votes
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
Answer: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
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