Bioconductor Bioc-devel

Showing : bioc-devel • reset

vote

replies

1.6k

views

DropletUtils Bioc-devel

6.0 years ago Matthew Thornton ▴ 380

vote

replies

1.5k

views

developers bioc-devel

6.3 years ago Casper van Mourik • 0

votes

replies

1.6k

views

developers bioc-devel package development circular dependencies

updated 6.5 years ago by shepherl 4.1k • written 6.5 years ago by Tim Triche ★ 4.2k

votes

2.5k

views

bioconductor developers bioc-devel News

6.9 years ago Alejandro Reyes ★ 1.9k

votes

replies

3.1k

views

bioccheck roxygen2 warning bioc-devel package development

updated 7.4 years ago by Lluís Revilla Sancho ▴ 760 • written 7.4 years ago by Paul Brennan ▴ 10

votes

replies

2.5k

views

subversion bioc-devel package development usedevel Tutorial

7.6 years ago Bohdan Khomtchouk ▴ 10

votes

replies

1.3k

views

developers bioc-devel

updated 8.0 years ago by Martin Morgan 25k • written 8.0 years ago by mlbendall • 0

votes

replies

4.2k

views

rtracklayer bioc-devel ssl openssl

updated 8.8 years ago by Michael Lawrence ★ 11k • written 8.8 years ago by Peter Hickey ▴ 750

vote

replies

2.0k

views

software bioc-devel developers R

updated 9.4 years ago by Dan Tenenbaum ★ 8.2k • written 9.4 years ago by MarcinKosiński • 0

votes

replies

2.6k

views

docker bioc-devel

updated 9.8 years ago by Dan Tenenbaum ★ 8.2k • written 9.8 years ago by Nathan Sheffield ▴ 10

votes

replies

1.9k

views

package bioconductor bioc-devel developers

9.9 years ago flying-sheep ▴ 10

votes

replies

2.4k

views

readvcf plink file conversion bed bioc-devel

10.0 years ago mjsduncan • 0

votes

2.2k

views

installation bioc-devel

updated 10.5 years ago by Martin Morgan 25k • written 10.5 years ago by Tiphaine Martin ▴ 40

vote

1.9k

views

software error bioc-devel

updated 10.5 years ago by Martin Morgan 25k • written 10.5 years ago by Tiphaine Martin ▴ 40

14 results • Page 1 of 1

Recent ...

Replies

Comment: Annotation package for Manduca sexta by GA ▴ 10

Thank you!

Comment: Improving performance of edgeR and limma while adjusting for multiple confounder by ATpoint ★ 4.8k

If 2 minutes is inacceptable to you then you can still fall back to limma-trend which should give a dramatic speedup and finish in seconds.…

Comment: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Mike Smith ★ 6.6k

Great, thanks for the update from Ensembl. So the most relevant part of 'Location: Scaffold HG1277_PATCH: 137,021-141,806 forward strand' …

Answer: Improving performance of edgeR and limma while adjusting for multiple confounder by Gordon Smyth 52k

We recommend that you use voomLmFit() instead of voom+lmFit. We are pretty proud of the speed of glmQLFit and voom, and we hadn't expected…

Answer: Merging EPICV1 and V2 betas by James W. MacDonald 68k

It appears that [SeSAMe][1] has functions meant to do that sort of thing. [1]: https://bioconductor.org/packages/release/bioc/vignet…

Votes

Looking for equivalent EPIC chip v1 vs. v2 annotation variables

Properly constructing a hypergeometric test

A: Is logFC a log2 fold change or some other base in scran::findMarkers

Comment: Error in retrieving clinical data

What is the cheapest day to fly on American Airlines? {Ask_Expert}

Awards • All