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0
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2
replies
381
views
NCBI protein conversion to CDNA and NCBI gene (in R)
convert
updated 5 months ago by 66k • written 5 months ago by • 0
1
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3
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480
views
Pan-organism OrgDb database, Accession number translated to organism name in R
AccNo OrgDb convert Organismname RStudio
updated 6 months ago by 66k • written 6 months ago by • 0
2
votes
5
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869
views
Conversion between different types of bioinformatic forms. (eg. NCBI protein to Ensembl protein) in R
RStudio convert ensembldb NCBI
6 months ago j_denton • 0
2
votes
1
reply
727
views
Using oligo or xps to read and convert RNA-seq data CEL file to txt file.
oligoData DataImport oligo RNASeqData convert
updated 10 months ago by 66k • written 10 months ago by • 0
0
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0
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641
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TFutils database
TFutils mouse gene convert
3.0 years ago nicocillari • 0
2
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6
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1.6k
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getLDS error in scan
biomaRt getLDS convert gene symbols
updated 3.6 years ago by ★ 6.5k • written 3.6 years ago by • 0
1
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4
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RNA-seq analysis using R
limma rnaseq convert R
updated 13 months ago by 50k • written 5.5 years ago by ▴ 10
1
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2
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6.3k
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How to convert Illumina HT_12_v4 annotation
convert R annotation microarray illumina human ht-12 v4
updated 17 months ago by ▴ 20 • written 6.4 years ago by • 0
1
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7
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2.3k
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Can XCMS output continuum/profile data to netCDF format?
xcms convert protein
updated 7.5 years ago by ★ 2.0k • written 7.5 years ago by • 0
1
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3
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1.5k
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To convert MAList to ExpressionSet using R package 'convert'
convert
updated 7.5 years ago by 50k • written 7.5 years ago by • 0
1
vote
1
reply
1.5k
views
converting amino-acid one letter code into cDNA sequene
convert aminoacid-onlettercode cDNA
7.9 years ago arvind90.psc • 0
1
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2
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2.5k
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making ExpressionSet from RGList via NChannelSet for use with 'sva'
biobase convert sva ringo arrayqualitymetrics
updated 8.2 years ago by 50k • written 8.2 years ago by • 0
1
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1
reply
1.7k
views
Error of GDS2eSet() function
convert geoquery error GDS2eSet
updated 8.4 years ago by 66k • written 8.4 years ago by • 0
0
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0
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1.1k
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How to convert codominant Microsatellite two column data into illumina AB format?
Microsatellite Convert recode
8.6 years ago parka • 0
0
votes
3
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11k
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How to combine expression values of multiple probes for one gene
probe convert geneexpression onechannelgui
updated 8.8 years ago by ▴ 830 • written 8.8 years ago by ▴ 10
0
votes
5
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6.1k
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How to reverse translate amino acid sequence into mammalian codon optimised cDNA
convert translation
written 9.5 years ago by ▴ 20
5
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5
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2.0k
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Metagenomic analysis: Aligning ChIPseq data on TSS
metagenomics chipseq biomart shortread convert biomaRt
9.7 years ago patrick.schordert ▴ 30
0
votes
1
reply
2.1k
views
Converting .gpr files to .csv files
Microarray GO convert
updated 9.7 years ago by 66k • written 9.7 years ago by ★ 13k
0
votes
5
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2.5k
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Motif enrichment analysis: Error in transfac format and background frequencies from BSGenome
BSgenome convert BSgenome PWMEnrich MotifDb
updated 9.7 years ago by ▴ 80 • written 9.7 years ago by ▴ 50
0
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0
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1.4k
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ChIPpeakAnno
SNP Annotation annotate convert SNP Annotation annotate convert
9.8 years ago Julie Zhu ★ 4.3k
0
votes
1
reply
2.1k
views
narrow and xstringset
convert convert
updated 9.8 years ago by ★ 6.8k • written 9.8 years ago by ▴ 680
0
votes
2
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2.9k
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Biomart annotation
annotate convert annotate convert
updated 9.9 years ago by ▴ 190 • written 9.9 years ago by ▴ 40
0
votes
2
replies
1.8k
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ShortReadQ and conversion of quality scores to characters
convert convert
updated 9.9 years ago by 25k • written 9.9 years ago by ▴ 310
0
votes
1
reply
1.8k
views
SomaticSignatures
Annotation Cancer convert Annotation Cancer convert
updated 9.9 years ago by ★ 1.3k • written 9.9 years ago by ▴ 90
0
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6
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converting probeset id to gene id's : fRMA
probe affy convert frma probe affy convert frma
updated 9.9 years ago by ★ 3.0k • written 9.9 years ago by ▴ 190
0
votes
7
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1.7k
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Approaches to building Rle sequences from ranges
GO convert GO convert
updated 10.0 years ago by ▴ 90 • written 10.0 years ago by ▴ 40
0
votes
2
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2.2k
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GRanges - coercion from dataframe
convert convert
updated 10.0 years ago by ★ 11k • written 10.0 years ago by ▴ 10
0
votes
4
replies
1.5k
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GenomicAlignments and QNAME collision
RNASeq Cancer convert Rsamtools GenomicAlignments RNASeq Cancer convert Rsamtools
updated 10.0 years ago by ▴ 90 • written 10.0 years ago by ★ 6.8k
0
votes
4
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1.5k
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error on loading ratioConvert() in minfi
convert minfi convert minfi
updated 10.0 years ago by ★ 6.5k • written 10.0 years ago by ★ 13k
1
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2
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3.4k
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minfi, bumphunter + complex experimental design, and 3 other 450K queries
GO convert minfi bumphunter GO convert minfi bumphunter
updated 8.3 years ago by ▴ 30 • written 10.0 years ago by ★ 4.0k
1
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2
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12k
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Mapping gene symbols to gene names (org.Hs.eg.db?)
convert convert
updated 10.0 years ago by 66k • written 10.0 years ago by ★ 1.1k
0
votes
0
replies
1.2k
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viewApply drops feature names; transfer names between lists
Coverage convert Coverage convert
10.1 years ago Chris Seidel ▴ 80
0
votes
9
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2.6k
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ReportingTools gene IDs
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updated 10.1 years ago by 66k • written 10.1 years ago by ★ 1.5k
0
votes
0
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2.2k
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Pathview question
Network convert pathview Network convert pathview
10.1 years ago Luo Weijun ★ 1.6k
0
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5
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2.6k
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summarizeOverlaps using GRanges or bed file as reads?
convert convert
updated 10.1 years ago by 25k • written 10.1 years ago by ★ 7.9k
0
votes
0
replies
959
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BiomaRt getBM error: Unknown column
convert biomaRt convert biomaRt
10.1 years ago Guest User ★ 13k
0
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5
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A question about the function readGAlignmentPairs in GenomicRnages package
Alignment Cancer convert GenomicAlignments Alignment Cancer convert GenomicAlignments
updated 10.1 years ago by 16k • written 10.1 years ago by ▴ 50
0
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0
replies
1.4k
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CellMix package use with own data matrix
convert convert
10.2 years ago Riba Michela ▴ 90
0
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0
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1.3k
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crlmm problem
SNP convert beadarray crlmm SNP convert beadarray crlmm
10.2 years ago Matthias Arnold ▴ 10
0
votes
0
replies
1.7k
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DMR identification: minfi speed, memory problems
Annotation convert minfi methyAnalysis bumphunter Annotation convert minfi methyAnalysis
10.2 years ago Allegra Petti ▴ 120
0
votes
8
replies
2.3k
views
methyAnalysis for DMR identification
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updated 10.2 years ago by ▴ 160 • written 10.2 years ago by ★ 13k
0
votes
6
replies
3.0k
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DMR identification: minfi speed, memory problems
Annotation convert minfi methyAnalysis bumphunter Annotation convert minfi methyAnalysis
updated 10.2 years ago by 66k • written 10.2 years ago by ★ 13k
0
votes
3
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2.0k
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Minfi "mapToGenome" error when attempting to generate a genomicRatioSet
Cancer convert minfi Cancer convert minfi
updated 8.6 years ago by • 0 • written 10.3 years ago by ★ 6.5k
0
votes
2
replies
1.3k
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Tigre Package question 3
Microarray impute PROcess convert mmgmos puma tigre trigger Microarray impute PROcess
updated 10.3 years ago by ▴ 60 • written 10.3 years ago by ▴ 50
0
votes
1
reply
1.4k
views
Using GOstats with ScanArray Express Data
Organism probe convert GOstats Organism probe convert GOstats
updated 10.3 years ago by ★ 13k • written 10.3 years ago by ★ 13k
0
votes
2
replies
1.7k
views
Minfi "mapToGenome" error when attempting to generate a genomicRatioSet
convert minfi convert minfi
updated 10.3 years ago by ★ 6.5k • written 10.3 years ago by ▴ 30
0
votes
3
replies
2.1k
views
ChIPpeakAnno: TSS at - strand
Annotation convert ChIPpeakAnno Annotation convert ChIPpeakAnno
10.4 years ago Julie Zhu ★ 4.3k
0
votes
2
replies
2.2k
views
ensemblVEP, variant_effect_predictor versions and release schedule
Transcription HapMap PolyPhen SIFT convert genomes ensemblVEP Transcription HapMap SIFT
updated 10.4 years ago by ★ 6.8k • written 10.4 years ago by ▴ 30
0
votes
0
replies
1.2k
views
Fwd: GWASTools
cdf convert GWASTools cdf convert GWASTools
10.4 years ago Stephanie M. Gogarten ▴ 870
0
votes
0
replies
1.1k
views
CAMERA output to Neutral Monoisotopic Mass
convert CAMERA convert CAMERA
10.4 years ago Charles Determan Jr ▴ 140
50 results • Page 1 of 1
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Answer: Help with infinite recursion - non-zero exit status in installation of GenomeInf by James W. MacDonald 66k
Maybe just try again? ``` > install("GenomeInfoDbData", force = TRUE) 'getOption("repos")' replaces Bioconductor standard repositorie…
Comment: Help with infinite recursion - non-zero exit status in installation of GenomeInf by Brandon • 0
Hello, As an update, I am able to install and load GenomeInfoDb successfully in a fresh renv in my WSL distro. However, I'm not sure what …
Comment: slingshot: error with plot3d.SlingshotDataSet by Kelly Street • 0
This issue has been addressed [on GitHub][1]. [1]: https://github.com/kstreet13/slingshot/issues/249
Comment: Slightly different count plots from R and spreadsheet by Michael Love 42k
Change timepoint to an integer in the data frame: ``` as.numeric(as.character( <factor> )) ``` Then it should make points instead of boxe…
Answer: WGNCA kME vs. kIM by Vitor • 0
You can compare kIM and kME within module assignments. The plot below is for my network (I used Pearson correlation and signed network). !…
Votes
Including squared covariates to account for non-linear dependencies in differential gene expression analysis
DESeq2 DE gene expression of scRNA-seq pseudobulk
Answer: Multiple factor DSEq2 result generates weird volcano plot
DESeq2 for single cell pseudobulk processing
Simultaneously adding two different covariates in the model gives error in DESeq2.
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