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3.0k

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limma export log2 data agilent

updated 9.5 years ago by James W. MacDonald 65k • written 9.5 years ago by Jahn Davik ▴ 110

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3.0k

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biseq fdr data results

9.1 years ago • updated 9.0 years ago mnaymik ▴ 10

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2.1k

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ExpressionSet Assay NanoString Error Data

updated 21 months ago by James W. MacDonald 65k • written 21 months ago by junli1988 • 0

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2.0k

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flowCore flowjo data

updated 9.4 years ago by Greg Finak ▴ 150 • written 9.4 years ago by AJC ▴ 10

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1.9k

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data package submission BiocCheck

4.8 years ago j.flesch ▴ 10

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1.4k

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edger data analysis

8.8 years ago Pau Marc Muñoz Torres ▴ 20

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1.3k

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omiccircos bug hg19 hg18 data

7.0 years ago matthew.bashton • 0

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1.2k

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data

8.9 years ago Bogdan ▴ 670

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1.2k

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rna-seq data

updated 7.3 years ago by Gordon Smyth 50k • written 7.3 years ago by bioinformatics ▴ 10

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1.1k

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TCGAbiolinks data normalize l

updated 2.7 years ago by Kevin Blighe ★ 3.9k • written 2.7 years ago by DANIELA • 0

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1.1k

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transform flow cytometry data

updated 7.3 years ago by SamGG ▴ 350 • written 7.3 years ago by cr • 0

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937

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package data

5.7 years ago divyswar01 • 0

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851

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data immunology software vaccinology

2.6 years ago Daniel • 0

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708

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cellGrowth data

6.0 years ago muitalegal888 • 0

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569

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HELP Data

updated 20 months ago by Guido Hooiveld ★ 3.9k • written 20 months ago by mcclurejenniferc • 0

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547

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Cytometry R Data

22 months ago hamiltond ▴ 10

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497

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BAM Segmentation CINdex VCF Data

20 months ago raven1306 • 0

17 results • Page 1 of 1

Recent ...

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Answer: SGSeq: moving toward diffex from SGSeq analysis by Leonard Goldstein ▴ 200

`vid` and `eid` are unique identifiers for splice variants and splicing events respectively. They are analogous to exon bin and gene identi…

Comment: Help with error using camera() in limma by Chris • 0

Thanks James! I fixed the error. I try gene symbol instead of entrez and it worked.

Comment: limma for gene expression analysis with big and unbalanced sample size by XW • 0

Could you explain more about the comment "there are no problems with using limma for unbalanced data sets" ? thanks.

Comment: Limma, eBayes different sample size of groups and adjustment by XW • 0

Could you explain more about how the analysis self-correct the different sample sizes when calling DEGs in limma? Thanks

Answer: How do I select a GC file (gc.wig)? (How to determine the inputdata of HMMcopy) by James W. MacDonald 65k

The section of the vignette that is *directly above the one you quote* says that you can use the HMMcopy utils to do all three things. And …

Votes

Answer: Fold change calculation in Diffbind vs. DESEQ2?

C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB

C: Extremely big genes in annotation TxDb packages

Make custom Txdb class objects from Txdb

Comment: Help with error using camera() in limma

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