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3.0k

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limma export log2 data agilent

updated 9.6 years ago by James W. MacDonald 65k • written 9.6 years ago by Jahn Davik ▴ 110

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3.0k

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biseq fdr data results

9.1 years ago • updated 9.0 years ago mnaymik ▴ 10

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1.4k

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edger data analysis

8.8 years ago Pau Marc Muñoz Torres ▴ 20

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941

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package data

5.7 years ago divyswar01 • 0

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1.2k

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data

8.9 years ago Bogdan ▴ 670

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1.9k

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data package submission BiocCheck

4.8 years ago j.flesch ▴ 10

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2.0k

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flowCore flowjo data

updated 9.4 years ago by Greg Finak ▴ 150 • written 9.5 years ago by AJC ▴ 10

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549

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Cytometry R Data

22 months ago hamiltond ▴ 10

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502

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BAM Segmentation CINdex VCF Data

20 months ago raven1306 • 0

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571

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HELP Data

updated 20 months ago by Guido Hooiveld ★ 3.9k • written 20 months ago by mcclurejenniferc • 0

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1.2k

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rna-seq data

updated 7.4 years ago by Gordon Smyth 50k • written 7.4 years ago by bioinformatics ▴ 10

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1.1k

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transform flow cytometry data

updated 7.3 years ago by SamGG ▴ 350 • written 7.3 years ago by cr • 0

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1.3k

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omiccircos bug hg19 hg18 data

7.0 years ago matthew.bashton • 0

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710

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cellGrowth data

6.0 years ago muitalegal888 • 0

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2.1k

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ExpressionSet Assay NanoString Error Data

updated 21 months ago by James W. MacDonald 65k • written 21 months ago by junli1988 • 0

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854

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data immunology software vaccinology

2.6 years ago Daniel • 0

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1.1k

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TCGAbiolinks data normalize l

updated 2.8 years ago by Kevin Blighe ★ 3.9k • written 2.8 years ago by DANIELA • 0

17 results • Page 1 of 1

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Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k

I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …

Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k

This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…

Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0

Thank you Tim, this is a great help in getting me started!

Comment: Too many significant genes when integrating gtex and tcga by Michael Love 41k

Yes, this was one of the aspects we highlighted in the 2014 paper, and it's also in the workflow. Check these places first. Also take a st…

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Answer: limma Intercept vs No-intercept models completely changing DMR results?

Answer: CombineArrays for EPIC and EPIC V2

Answer: Too many significant genes when integrating gtex and tcga

Comment: Too many significant genes when integrating gtex and tcga

A: Print Differentially Expressed Exons From Dexseq Results

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