Bioconductor Dataframe

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3.8k

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S4Vectors DataFrame haven_labelled haven

updated 2.9 years ago by Danny Smith ▴ 20 • written 2.9 years ago by Daniel E. Weeks ▴ 30

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2.1k

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Rscript tidyr dataframe tidyverse offtopic

updated 3.2 years ago by Marcel Ramos 700 • written 3.3 years ago by Nikhil • 0

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3.0k

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list save dataframe

updated 3.4 years ago by shepherl 4.2k • written 3.4 years ago by orticello.1160797 ▴ 10

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983

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qvalues dataframe

updated 3.8 years ago by Gordon Smyth 53k • written 3.8 years ago by leonardorosas2001 • 0

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4.5k

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deseq2 dataframe ensembl gene id gene symbol entrezid

updated 7 months ago by Erika • 0 • written 5.9 years ago by jason.williams ▴ 10

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1.1k

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S4Vectors DataFrame

6.2 years ago maltethodberg ▴ 180

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1.4k

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DataFrame S4Vectors

updated 6.5 years ago by Michael Lawrence ★ 11k • written 6.5 years ago by Laurent Gatto 1.6k

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1.6k

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s4 dataframe left_join merge

updated 6.5 years ago by Hervé Pagès 16k • written 6.5 years ago by Michael Steinbaugh ▴ 90

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2.1k

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deseq2 dataframe pasilla

updated 6.5 years ago by Michael Love 43k • written 6.5 years ago by ecg1g15 ▴ 30

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1.8k

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DataFrame subsetting S4Vectors

updated 6.8 years ago by Hervé Pagès 16k • written 6.8 years ago by felix.ernst • 0

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1.7k

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meme ame motif dataframe granges

updated 7.0 years ago by Michael Lawrence ★ 11k • written 7.0 years ago by rbronste ▴ 60

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5.5k

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chipenrich granges distancetonearest function dataframe

8.0 years ago rbronste ▴ 60

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7.4k

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genomicranges grangeslist dataframe irangeslist lists

updated 8.1 years ago by Michael Lawrence ★ 11k • written 8.1 years ago by Assa Yeroslaviz ★ 1.5k

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1.6k

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limma kegg topgo dataframe edger

8.2 years ago mictadlo ▴ 10

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1.8k

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mcols DataFrame GRanges

updated 8.3 years ago by Michael Lawrence ★ 11k • written 8.3 years ago by wcstcyx ▴ 30

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2.0k

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DataFrame Rle generic expression table

updated 2.3 years ago by Hervé Pagès 16k • written 8.4 years ago by Charles Plessy ▴ 180

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3.0k

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s4vectors dataframe

updated 8.7 years ago by Hervé Pagès 16k • written 8.7 years ago by Welliton de Souza ▴ 70

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1.5k

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r iranges integerlist DataFrame

updated 9.0 years ago by Jurat Shahidin ▴ 80 • written 9.0 years ago by jian_liangli • 0

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1.6k

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r DataFrame fisher-method

9.3 years ago Jurat Shahidin ▴ 80

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996

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topologyGSA dataframe

9.5 years ago saamar.rajput • 0

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2.0k

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variantannotation DataFrame snpstats

10.0 years ago TimothéeFlutre ▴ 80

21 results • Page 1 of 1

Recent ...

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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