Showing : dataframe • reset
11
votes
17
replies
2.2k
views
SV4Vectors DataFrame bug with haven_labelled data
S4Vectors DataFrame haven_labelled haven
updated 16 months ago by ▴ 20 • written 17 months ago by ▴ 30
1
vote
3
replies
1.1k
views
Extract specific portion of a string and paste to a new column in R
Rscript tidyr dataframe tidyverse offtopic
updated 20 months ago by 690 • written 21 months ago by • 0
0
votes
0
replies
1.7k
views
stuck on unimplemented type 'list' in 'EncodeElement'
list save dataframe
updated 22 months ago by 3.8k • written 22 months ago by • 0
0
votes
1
reply
642
views
How to insert a qvalues column in a dataframe with pvalues in R
qvalues dataframe
updated 2.3 years ago by 50k • written 2.3 years ago by • 0
0
votes
4
replies
2.5k
views
DESeq2 swap ensembl gene id rownames with gene symbol column
deseq2 dataframe ensembl gene id gene symbol entrezid
4.4 years ago jason.williams • 0
1
vote
1
reply
796
views
Checking if to DataFrames are identical
S4Vectors DataFrame
4.6 years ago maltethodberg ▴ 170
5
votes
2
replies
909
views
DataFrame after splitting and back
DataFrame S4Vectors
updated 5.0 years ago by ★ 11k • written 5.0 years ago by 1.6k
2
votes
2
replies
1.0k
views
DataFrame compatible left_join (merge) operation supporting S4 complex columns that never reorders rows
s4 dataframe left_join merge
updated 5.0 years ago by 16k • written 5.0 years ago by ▴ 90
1
vote
5
replies
1.4k
views
DESeq2: differential expression analysis from matrix count with gene annotation
deseq2 dataframe pasilla
updated 5.0 years ago by 41k • written 5.0 years ago by ▴ 20
0
votes
2
replies
1.2k
views
DataFrame matrix subsetting
DataFrame subsetting S4Vectors
updated 5.3 years ago by 16k • written 5.3 years ago by • 0
1
vote
2
replies
1.2k
views
Split AME .tsv file into GRanges object or DataFrame
meme ame motif dataframe granges
updated 5.5 years ago by ★ 11k • written 5.5 years ago by ▴ 60
0
votes
5
replies
4.4k
views
Unable to find an inherited method for function distanceToNearest for signature GRanges
chipenrich granges distancetonearest function dataframe
6.5 years ago • updated 6.4 years ago rbronste ▴ 60
6
votes
6
replies
6.0k
views
converting a GRangesList object with different lengths into a data frame
genomicranges grangeslist dataframe irangeslist lists
updated 6.6 years ago by ★ 11k • written 6.6 years ago by ★ 1.5k
0
votes
2
replies
1.2k
views
how to build gene.pathway data.frame for non-model organism
limma kegg topgo dataframe edger
6.6 years ago mictadlo ▴ 10
3
votes
2
replies
1.3k
views
matrix as a column of mcols of GRanges would not be extracted correctly by lapply
mcols DataFrame GRanges
updated 6.8 years ago by ★ 11k • written 6.8 years ago by ▴ 30
2
votes
4
replies
1.4k
views
Generic functions for DataFrames of Rle objects ?
DataFrame Rle generic expression table
updated 9 months ago by 16k • written 6.9 years ago by ▴ 180
4
votes
10
replies
2.2k
views
Printing DataFrame with nested DataFrames causes error
s4vectors dataframe
updated 7.2 years ago by 16k • written 7.2 years ago by ▴ 70
2
votes
2
replies
1.2k
views
How to conditionally combine IntegerList in the DataFrame more elegantly?
r iranges integerlist DataFrame
updated 7.5 years ago by ▴ 80 • written 7.5 years ago by • 0
2
votes
2
replies
1.2k
views
getting global Fisher score for overlap of 3 GRanges object by element-wise [solved]
r DataFrame fisher-method
7.8 years ago Jurat Shahidin ▴ 80
0
votes
0
replies
757
views
Error in TopologyGSA
topologyGSA dataframe
8.0 years ago saamar.rajput • 0
1
vote
1
reply
1.6k
views
Write the "map" DataFrame from genotypeToSnpMatrix() to a text file
variantannotation DataFrame snpstats
8.4 years ago TimothéeFlutre ▴ 80
21 results • Page 1 of 1
Recent ...
Replies
Comment: Deseq2. decontXcounts not integers. Useful alternative? by ATpoint ★ 4.0k
I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…
Answer: Improving the design matrices vignette in RNAseq123 by Gordon Smyth 50k
Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0
Thank you for your comment! I'll review my code from top to bottom.
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;
Votes
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Awards • All
Scholar to James W. MacDonald 65k
Supporter to JKim • 0
Popular Question to Gordon Smyth 50k
Popular Question to Chris • 0
Supporter to Jonathan ▴ 10
Locations • All
United States, just now
United States, 7 minutes ago
Australia, 11 minutes ago
Portugal, 21 minutes ago
Wageningen University, Wageningen, the Netherlands, 47 minutes ago
Traffic: 881 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6