Bioconductor Dmr

Showing : dmr • reset

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3.5k

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bsseq dmr ttest pvalue

updated 8.2 years ago by James W. MacDonald 65k • written 8.2 years ago by enricoferrero ▴ 660

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1.5k

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dmrseq dmr dmrs bisulfite methylation

updated 6.2 years ago by keegan ▴ 60 • written 6.2 years ago by l.kremer • 0

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1.1k

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BiSeq DMR

updated 3.9 years ago by James W. MacDonald 65k • written 3.9 years ago by akhaira • 0

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1.3k

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ChAMP minfi DMR dmr analysis lasso

8.5 years ago AST ▴ 60

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2.5k

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dmr methylation deseq2 bsseq biseq

updated 8.5 years ago by Kasper Daniel Hansen ★ 6.5k • written 8.5 years ago by enricoferrero ▴ 660

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4.2k

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bumphunter DMR DMR analysis minfi bioconductor

updated 7.3 years ago by rafa ▴ 60 • written 7.3 years ago by chelsey.ju • 0

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1.8k

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dmr MethylationArrayData DMRcatedata

updated 3.5 years ago by James W. MacDonald 65k • written 3.5 years ago by Julie • 0

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1.4k

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DMR Methylation R Gviz

updated 5 months ago by Robert Ivanek ▴ 730 • written 3.0 years ago by ltzhou • 0

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1.7k

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methylation linear model dmr bsseq biseq

8.4 years ago enricoferrero ▴ 660

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725

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BiSeq testClusters error dmr

3.8 years ago akhaira • 0

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747

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Biseq Methylation DMP DMR RRBS

3.8 years ago i.s.castanho • 0

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522

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edgeR DMR

updated 15 months ago by Michael Love 41k • written 15 months ago by Fiona • 0

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1.5k

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dmrcate dmr analysis dmr

updated 7.2 years ago by Tim Peters ▴ 170 • written 7.2 years ago by alexandria.andrayas ▴ 10

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1.2k

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illumina methylationepic 450k limma minfi dmr analysis dmr

updated 7.1 years ago by Aaron Lun ★ 28k • written 7.1 years ago by Ellen O • 0

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1.4k

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bumphunter DMR doparallel multicore

updated 9 months ago by Alessandro • 0 • written 6.0 years ago by arce.domingo.1407 • 0

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707

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methylsig no replicates dmr

5.8 years ago nilaycan • 0

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1.6k

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ChAMP DMR champ.DMR

5.6 years ago yuabrahamliu • 0

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903

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bumphunter DMR methylation minfi

4.2 years ago i.s.brorson • 0

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850

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DMR bumphunter EPIC chip

4.2 years ago i.s.brorson • 0

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795

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ChAMP DMR

updated 3.9 years ago by Yuan Tian ▴ 280 • written 3.9 years ago by olive8306 • 0

20 results • Page 1 of 1

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Comment: Why p value inconsistent when using different number of pathway score? by Chris • 0

Hi Robert, if two conditions don't have hundreds of differential express genes ( in some conditions such as peripheral blood Alzheimer vs n…

Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40

1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…

Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Votes

Answer: Dominance Index for Shotgun Metagenomics Data

Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length

Comment: Deseq2. decontXcounts not integers. Useful alternative?

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

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