Showing : illimina 450k methylation • reset
9
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Generation of QSEA TCGA 450K Human Methylation Calibration Dataset
illimina 450k methylation qsea MEDIPS TCGA
updated 12 months ago by ▴ 280 • written 7.7 years ago by ▴ 20
1
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3
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2.0k
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Merge column to SummarizedExperiment from other dataframe
summarizedexperiment rangedsummarizedexperiment illimina 450k methylation
6.2 years ago s.w.vanderlaan ▴ 30
0
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5
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2.6k
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DNA methylation analysis without raw data IDAT files
r illimina 450k methylation minfi champ tcga
updated 6.4 years ago by ▴ 290 • written 6.4 years ago by ▴ 60
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1
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1.7k
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Error in Rnbeads:Error in logger.error(em) : Could not create file. cannot popen '/usr/bin/which 'gs' 2>/dev/null', probable reason 'Cannot alloca…
R bioconductor rnbeads microarray illimina 450k methylation
7.1 years ago preethibagopi28 ▴ 10
1
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1.9k
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Beta Value Analysis - DNA Methylation Dataset
dna methylation illimina 450k methylation beta M significance
updated 7.3 years ago by 67k • written 7.3 years ago by • 0
0
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0
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1.4k
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Error when using Champ.SVD() function
champ champs.svd() 450K illimina 450k methylation champ 2.8.9
7.3 years ago david.ch • 0
0
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0
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1.5k
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how to use Methylumi background correction (noob) in CHAMP
Methylumi NOOB CHAMP Background corection illimina 450k methylation
7.7 years ago rahel14350 ▴ 10
0
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1
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1.9k
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Epigenetic clock (Horvath): package?
methylation illimina 450k methylation epigenetics minfi
updated 7.8 years ago by ▴ 60 • written 7.9 years ago by ▴ 120
0
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1
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1.1k
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effective tools, methylation data
illimina 450k methylation bioconductor
updated 7.9 years ago by 67k • written 7.9 years ago by • 0
0
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0
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1.0k
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Problem annotating with COHCAP 1.16.0 in MacOsX
illimina 450k methylation RNA-seq COHCAP
8.0 years ago IOM ▴ 20
0
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0
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899
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Replicates need for methylation analysis using minfi
minfi methylation illimina 450k methylation
8.3 years ago arisarkar88 ▴ 40
4
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3
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2.1k
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Discrepanices between minifi dmp finder and lmfit
illimina 450k methylation minfi limma
8.4 years ago Andreas Paul • 0
0
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2
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1.1k
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Common probes between 27K and 450 chip
illimina 450k methylation
8.5 years ago Adrian Johnson ▴ 330
1
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2
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Further analysis of methylation microarrays data (Illumina - idat) after reading by illuminaio package
limma lumi illuminaio illimina 450k methylation microarray
8.7 years ago Adam • 0
0
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4
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1.8k
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minfi sample limit
minfi illumina illimina 450k methylation methylation
updated 8.8 years ago by ★ 6.5k • written 8.8 years ago by ▴ 50
0
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2
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2.1k
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RnBeads - error with 'rnb.run.differential' module
RnBeads illimina 450k methylation
9.2 years ago • updated 9.1 years ago Brian Smith ▴ 120
1
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13
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2.5k
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MethylAid package visualize function not opening a web browser
illimina 450k methylation methyanalysis methylaid
9.2 years ago jdangelo • 0
2
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2
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2.9k
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Illumina 450k Annotation Definitions/Articles: How was "Enhancer" status determined?
probe annotation illimina 450k methylation minfi methylation
9.5 years ago metamaden ▴ 10
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3
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DMRcate: incorporating covariates to find DMRs in methylation data?
limma illimina 450k methylation DMRcate
updated 9.7 years ago by ▴ 200 • written 9.7 years ago by ▴ 120
19 results • Page 1 of 1
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Answer: DESeq error: counts matrix should be numeric, currently it has mode: character by ATpoint ★ 4.6k
R thinks your data are characters (e.g. "1", "2", instead of 1, 2) so given that your `counts_data` indeed only contains counts, do: `mo…
Comment: Any tools to convert .gff to .gtf format by ControlF5 • 0
Yes, the Appsierra team recently built a tool to convert .gff to .gtf format. [ControlF5][1] is providing the best software testing service…
Comment: EuroBioC2024 abstract submission is open! by Alan Downey • 0
EuroBioC2024 has opened its abstract submission process, presenting an exciting opportunity for researchers to contribute to groundbreaking…
Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0
Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…
Answer: combining raw counts and estimated counts by O'Brien • 0
It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…
Votes
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
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