Showing : illimina 450k methylation • reset
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Generation of QSEA TCGA 450K Human Methylation Calibration Dataset
illimina 450k methylation qsea MEDIPS TCGA
updated 14 months ago by ▴ 280 • written 8.0 years ago by ▴ 20
1
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3
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2.1k
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Merge column to SummarizedExperiment from other dataframe
summarizedexperiment rangedsummarizedexperiment illimina 450k methylation
6.4 years ago s.w.vanderlaan ▴ 30
0
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5
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2.7k
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DNA methylation analysis without raw data IDAT files
r illimina 450k methylation minfi champ tcga
updated 6.6 years ago by ▴ 290 • written 6.6 years ago by ▴ 60
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1
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1.8k
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Error in Rnbeads:Error in logger.error(em) : Could not create file. cannot popen '/usr/bin/which 'gs' 2>/dev/null', probable reason 'Cannot alloca…
R bioconductor rnbeads microarray illimina 450k methylation
7.4 years ago preethibagopi28 ▴ 10
1
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1
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2.1k
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Beta Value Analysis - DNA Methylation Dataset
dna methylation illimina 450k methylation beta M significance
updated 7.5 years ago by 68k • written 7.5 years ago by • 0
0
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0
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1.4k
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Error when using Champ.SVD() function
champ champs.svd() 450K illimina 450k methylation champ 2.8.9
7.5 years ago david.ch • 0
0
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0
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1.5k
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how to use Methylumi background correction (noob) in CHAMP
Methylumi NOOB CHAMP Background corection illimina 450k methylation
8.0 years ago rahel14350 ▴ 10
0
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1
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2.0k
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Epigenetic clock (Horvath): package?
methylation illimina 450k methylation epigenetics minfi
updated 8.0 years ago by ▴ 60 • written 8.1 years ago by ▴ 120
0
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1
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1.2k
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effective tools, methylation data
illimina 450k methylation bioconductor
updated 8.1 years ago by 68k • written 8.1 years ago by • 0
0
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0
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1.1k
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Problem annotating with COHCAP 1.16.0 in MacOsX
illimina 450k methylation RNA-seq COHCAP
8.2 years ago IOM ▴ 20
0
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0
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930
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Replicates need for methylation analysis using minfi
minfi methylation illimina 450k methylation
8.5 years ago arisarkar88 ▴ 40
4
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3
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2.2k
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Discrepanices between minifi dmp finder and lmfit
illimina 450k methylation minfi limma
8.7 years ago Andreas Paul • 0
0
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2
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1.2k
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Common probes between 27K and 450 chip
illimina 450k methylation
8.7 years ago Adrian Johnson ▴ 330
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2
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2.4k
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Further analysis of methylation microarrays data (Illumina - idat) after reading by illuminaio package
limma lumi illuminaio illimina 450k methylation microarray
9.0 years ago Adam • 0
0
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4
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1.9k
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minfi sample limit
minfi illumina illimina 450k methylation methylation
updated 9.0 years ago by ★ 6.5k • written 9.0 years ago by ▴ 50
0
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2
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2.1k
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RnBeads - error with 'rnb.run.differential' module
RnBeads illimina 450k methylation
9.4 years ago Brian Smith ▴ 120
1
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13
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2.6k
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MethylAid package visualize function not opening a web browser
illimina 450k methylation methyanalysis methylaid
9.5 years ago jdangelo • 0
2
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2
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3.0k
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Illumina 450k Annotation Definitions/Articles: How was "Enhancer" status determined?
probe annotation illimina 450k methylation minfi methylation
9.7 years ago metamaden ▴ 10
0
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3
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3.6k
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DMRcate: incorporating covariates to find DMRs in methylation data?
limma illimina 450k methylation DMRcate
updated 10.0 years ago by ▴ 230 • written 10.0 years ago by ▴ 120
19 results • Page 1 of 1
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Comment: DiffBind custom normalization factor by Abbie • 0
Hello! Thanks so much for adding dba.normalize and all the documentation in the manual! I'm hoping I can ask a follow-up question here. I…
Answer: CpGs with genomic positions greater than the chromosome size in EPICv2? by James W. MacDonald 68k
All of the annotation packages provided by Bioconductor are simply repackaging of existing data from one or more sources. In this case, the…
Comment: Using TPM from tximport of Salmon output for singscore by Kent • 0
Thank you for the suggestions Michael. Would you say that after filtering out the low count genes, `rlog(counts, blind = T)` is doing the s…
Comment: Using TPM from tximport of Salmon output for singscore by Michael Love 43k
For clustering generally we recommend `vst()` see the workflow for example. For working with individual samples, I can see how a scaling/t…
Comment: DESeq2 model - How to test case/control time course model when taking account wi by Michael Love 43k
I'd recommend working with a local statistician or someone familiar with linear models in R. I have to reserve my time on the support site …
Votes
clusterProfiler-GO enrichment Error
A: Machine learning in R book
Data preparation and Machine learning on time course RNAseq data
Data preparation and Machine learning on time course RNAseq data
Answer: Use of org.Rn.eg.db with GRCr8 reference genome
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