Showing : illimina 450k methylation • reset
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Generation of QSEA TCGA 450K Human Methylation Calibration Dataset
illimina 450k methylation qsea MEDIPS TCGA
updated 23 months ago by ▴ 280 • written 8.7 years ago by ▴ 20
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Merge column to SummarizedExperiment from other dataframe
summarizedexperiment rangedsummarizedexperiment illimina 450k methylation
7.1 years ago s.w.vanderlaan ▴ 30
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DNA methylation analysis without raw data IDAT files
r illimina 450k methylation minfi champ tcga
updated 7.3 years ago by ▴ 290 • written 7.3 years ago by ▴ 60
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Error in Rnbeads:Error in logger.error(em) : Could not create file. cannot popen '/usr/bin/which 'gs' 2>/dev/null', probable reason 'Cannot alloca…
R bioconductor rnbeads microarray illimina 450k methylation
8.0 years ago preethibagopi28 ▴ 10
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Beta Value Analysis - DNA Methylation Dataset
dna methylation illimina 450k methylation beta M significance
updated 8.2 years ago by 68k • written 8.2 years ago by • 0
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Error when using Champ.SVD() function
champ champs.svd() 450K illimina 450k methylation champ 2.8.9
8.2 years ago david.ch • 0
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how to use Methylumi background correction (noob) in CHAMP
Methylumi NOOB CHAMP Background corection illimina 450k methylation
8.7 years ago rahel14350 ▴ 10
0
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2.2k
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Epigenetic clock (Horvath): package?
methylation illimina 450k methylation epigenetics minfi
updated 8.7 years ago by ▴ 60 • written 8.8 years ago by ▴ 120
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effective tools, methylation data
illimina 450k methylation bioconductor
updated 8.8 years ago by 68k • written 8.8 years ago by • 0
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0
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Problem annotating with COHCAP 1.16.0 in MacOsX
illimina 450k methylation RNA-seq COHCAP
8.9 years ago IOM ▴ 20
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Replicates need for methylation analysis using minfi
minfi methylation illimina 450k methylation
9.2 years ago arisarkar88 ▴ 40
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Discrepanices between minifi dmp finder and lmfit
illimina 450k methylation minfi limma
9.3 years ago Andreas Paul • 0
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Common probes between 27K and 450 chip
illimina 450k methylation
9.4 years ago Adrian Johnson ▴ 330
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Further analysis of methylation microarrays data (Illumina - idat) after reading by illuminaio package
limma lumi illuminaio illimina 450k methylation microarray
9.7 years ago Adam • 0
0
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4
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2.1k
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minfi sample limit
minfi illumina illimina 450k methylation methylation
updated 9.7 years ago by ★ 6.5k • written 9.7 years ago by ▴ 50
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2
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RnBeads - error with 'rnb.run.differential' module
RnBeads illimina 450k methylation
10.1 years ago Brian Smith ▴ 120
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13
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MethylAid package visualize function not opening a web browser
illimina 450k methylation methyanalysis methylaid
10.1 years ago jdangelo • 0
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3.2k
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Illumina 450k Annotation Definitions/Articles: How was "Enhancer" status determined?
probe annotation illimina 450k methylation minfi methylation
10.4 years ago metamaden ▴ 10
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DMRcate: incorporating covariates to find DMRs in methylation data?
limma illimina 450k methylation DMRcate
updated 10.6 years ago by ▴ 230 • written 10.6 years ago by ▴ 120
19 results • Page 1 of 1
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Comment: upstream git branches of bioc-release by TrentonCollier99 • 0
Thank you very much for taking the time to answer the question. I really appreciate your insights and comments. https://bioc-release.r-univ…
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0
Thank you very much! will take that into consideration
Comment: Large logFC but somewhat high FDR by JKim • 0
Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.
Comment: upstream git branches of bioc-release by Jeroen ▴ 10
OK I have updated https://bioc-release.r-universe.dev accordingly. Let me know if you find version differences when mirroring binaries.
Comment: Large logFC but somewhat high FDR by Gordon Smyth 53k
I don't know what `tp1` is. The relevant histogram would be: ``` hist(fit2$p.value[,"KO_vs_WT"]) ```
Votes
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
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