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pValue
•
reset
0
votes
2
replies
429
views
RNA-Seq p value range variation
DESeq2
pvalue
RNA-Seq
5 months ago
paul.meraner
• 0
1
vote
12
replies
2.0k
views
How to calculate p value when comparing two sets of DEGs and not applying interaction
DEGcomparison
DESeq2
InteractionSet
pvalue
13 months ago
paria.alipour
• 0
0
votes
0
replies
797
views
How to extract P-Values and LogFC from lrTest in MAST?
pvalue
logFC
lrtest
MAST
23 months ago
Tadeoye
▴ 20
0
votes
1
reply
1.7k
views
values (NA) in p value Deseq2 (reopen)
pvalue
NA
R
DESeq2
updated 3.3 years ago by
ATpoint
★ 4.8k • written 3.3 years ago by
Johan Largo
• 0
1
vote
2
replies
1.1k
views
How to understand the P-value generated by DEseq2
pValue
updated 3.9 years ago by
Michael Love
43k • written 3.9 years ago by
Kai_Qi
▴ 20
0
votes
6
replies
2.0k
views
DEXSeq dispersion outlier
DEXSeq
dispersion
pvalue
5.9 years ago
fiona.dick91
▴ 60
1
vote
6
replies
2.0k
views
Zero pvalues after lfcShrink of DESeq2 package
deseq2
pvalue
lfcshrink
updated 6.0 years ago by
Michael Love
43k • written 6.0 years ago by
peibo_xu
▴ 10
1
vote
5
replies
3.2k
views
Why the p value and logFC calculated by limma is so small
limma
volcanoplot
pvalue
logFC
updated 6.0 years ago by
Gordon Smyth
52k • written 6.0 years ago by
xingxd16
▴ 20
0
votes
9
replies
16k
views
How to generate a volcano plot when p-values from DESeq2 are zero?
deseq2
pvalue
visualization
enhancedvolcano
rnaseq
written 6.1 years ago by
ricardo3889
• 0
4
votes
7
replies
3.1k
views
edgeR DEG glmQLFTest
glmQLFTest
pvalue
updated 6.2 years ago by
Gordon Smyth
52k • written 6.2 years ago by
zhang.jianhai
▴ 10
0
votes
3
replies
1.1k
views
p-values smaller than machine epsilon in DESeq2
deseq2
pvalue
updated 6.4 years ago by
Michael Love
43k • written 6.4 years ago by
oscarf
• 0
9
votes
5
replies
5.7k
views
Finding DE genes from RNA-seq data
edgeR
pvalue
qvalue
fpkm
differential gene expression
updated 6.4 years ago by
Steve Lianoglou
★ 13k • written 6.4 years ago by
Harrisonesmith
• 0
4
votes
4
replies
2.1k
views
What doest this p.value distribution mean?
deseq2
pvalue
updated 6.8 years ago by
Michael Love
43k • written 6.8 years ago by
chipolino
• 0
1
vote
1
reply
1.5k
views
fdrtool corrected p-value histograms look weird
pvalue
adjusted pvalue
fdrtool
updated 7.1 years ago by
Michael Love
43k • written 7.1 years ago by
hele7
▴ 20
2
votes
2
replies
2.5k
views
How to control p-value inflation with limma
limma
pvalue
inflation
bacon
updated 8.1 years ago by
Aaron Lun
★ 28k • written 8.1 years ago by
stephane.cauchi
▴ 10
1
vote
1
reply
3.5k
views
Q value obtained from QValue package is lower than P value?
qvalue
pvalue
r
multiple comparisons
updated 8.2 years ago by
Storey, John D.
▴ 100 • written 8.2 years ago by
tombernardryan
▴ 60
0
votes
1
reply
1.5k
views
meta analysis of clc output(differential expression data )
rnaseq
metaseq
clc output
pvalue
meta analysis
updated 8.2 years ago by
Koki
▴ 10 • written 8.2 years ago by
hassangiahi
• 0
2
votes
10
replies
12k
views
adjusted p-values and p-values problems!
pvalue
adjusted pvalue
r
bonferroni
rna-seq
updated 8.5 years ago by
Michael Love
43k • written 8.5 years ago by
fromhj304
▴ 10
2
votes
4
replies
1.4k
views
ResrtingTools include pvalue NA
reportingtools
deseq2
NA
pvalue
updated 8.7 years ago by
Michael Love
43k • written 8.7 years ago by
NMostajo
▴ 10
0
votes
8
replies
2.0k
views
ReportingTools include pvalue NA and comparissons
R
reportingtools
deseq2
pvalue
coef
updated 8.8 years ago by
Michael Love
43k • written 8.8 years ago by
NMostajo
▴ 10
4
votes
1
reply
2.2k
views
Very low EdgeR Pvalues with very small sample size
edger
pvalue
sample size
updated 8.8 years ago by
Aaron Lun
★ 28k • written 8.8 years ago by
Venu Pullabhatla
▴ 40
6
votes
8
replies
7.0k
views
Does limma calculate pvalues using log2 fold changes or with linear values?
limma
pvalue
log2fc
log2
updated 2.3 years ago by
James W. MacDonald
68k • written 9.0 years ago by
serpalma.v
▴ 60
7
votes
11
replies
4.4k
views
t-statistic cutoff for finding DMRs with bsseq
bsseq
dmr
ttest
pvalue
updated 9.1 years ago by
James W. MacDonald
68k • written 9.1 years ago by
enricoferrero
▴ 680
1
vote
2
replies
1.7k
views
Cannot re-create q-values from the p-values in the DiffTable.
cummeRbund
pvalue
adjusted pvalue
qvalue
updated 9.2 years ago by
James W. MacDonald
68k • written 9.2 years ago by
Sameet Mehta
▴ 30
0
votes
0
replies
1.3k
views
pvalRRHO() does not compute the p-value
RRHO
rank
pvalue
9.5 years ago
aurelien
▴ 10
1
vote
3
replies
2.0k
views
confusing output from EdgeR Glm
edger
logfc
pvalue
updated 9.6 years ago by
Aaron Lun
★ 28k • written 9.6 years ago by
amoltej
▴ 10
4
votes
5
replies
3.2k
views
Is it sensable to use p-value detection in illumina bead array as present, absent or marginal call
illumina
pvalue
updated 9.8 years ago by
svlachavas
▴ 840 • written 9.8 years ago by
Agaz Hussain Wani
▴ 260
27 results • Page
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Comment: ComBat with repeated measures
by
ATpoint
★ 4.8k
It looks to me that you do not need the batch information since subject is nested with batch so correcting for subject will do a paired ana…
Comment: Surprising behavior for DEXseq dispersion estimate plot?
by
ATpoint
★ 4.8k
You realize this is a spam bot talking to you?
Comment: Merging EPICV1 and V2 betas
by
Garbayo
• 0
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Comment: Package developing and interoperation with Bioconductor
by
shepherl
4.1k
Using an example with SummarizedExperiment would satisfy the requirement; however the package should take the object directly and not just…
Comment: Error in H5Dclose(h5dataset) when trying to read in kallisto h5 files
by
Sofia
• 0
1. I have tried to update the packages and R but to no avail. I keep getting either this error or : `Error in H5Fclose(file$H5Identifier) …
Votes
Answer: CpGs with genomic positions greater than the chromosome size in EPICv2?
Answer: Explannation for ROAST results
A: How DiffBind run PCA based on peak data?
Looking for equivalent EPIC chip v1 vs. v2 annotation variables
Properly constructing a hypergeometric test
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