Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
pValue
•
reset
0
votes
2
replies
766
views
RNA-Seq p value range variation
DESeq2
pvalue
RNA-Seq
16 months ago
paul.meraner
• 0
1
vote
12
replies
3.0k
views
How to calculate p value when comparing two sets of DEGs and not applying interaction
DEGcomparison
DESeq2
InteractionSet
pvalue
23 months ago
paria.alipour
• 0
0
votes
0
replies
1.1k
views
How to extract P-Values and LogFC from lrTest in MAST?
pvalue
logFC
lrtest
MAST
2.8 years ago
Tadeoye
▴ 20
0
votes
1
reply
2.1k
views
values (NA) in p value Deseq2 (reopen)
pvalue
NA
R
DESeq2
updated 4.2 years ago by
ATpoint
★ 5.0k • written 4.2 years ago by
Johan Largo
• 0
1
vote
2
replies
1.3k
views
How to understand the P-value generated by DEseq2
pValue
updated 4.8 years ago by
Michael Love
43k • written 4.8 years ago by
Kai_Qi
▴ 20
0
votes
6
replies
2.4k
views
DEXSeq dispersion outlier
DEXSeq
dispersion
pvalue
6.8 years ago
fiona.dick91
▴ 60
1
vote
6
replies
2.3k
views
Zero pvalues after lfcShrink of DESeq2 package
deseq2
pvalue
lfcshrink
updated 6.9 years ago by
Michael Love
43k • written 6.9 years ago by
peibo_xu
▴ 10
1
vote
5
replies
4.0k
views
Why the p value and logFC calculated by limma is so small
limma
volcanoplot
pvalue
logFC
updated 6.9 years ago by
Gordon Smyth
53k • written 6.9 years ago by
xingxd16
▴ 20
0
votes
9
replies
17k
views
How to generate a volcano plot when p-values from DESeq2 are zero?
deseq2
pvalue
visualization
enhancedvolcano
rnaseq
written 7.0 years ago by
ricardo3889
• 0
4
votes
7
replies
3.8k
views
edgeR DEG glmQLFTest
glmQLFTest
pvalue
updated 7.0 years ago by
Gordon Smyth
53k • written 7.0 years ago by
zhang.jianhai
▴ 10
0
votes
3
replies
1.3k
views
p-values smaller than machine epsilon in DESeq2
deseq2
pvalue
updated 7.3 years ago by
Michael Love
43k • written 7.3 years ago by
oscarf
• 0
9
votes
5
replies
7.6k
views
Finding DE genes from RNA-seq data
edgeR
pvalue
qvalue
fpkm
differential gene expression
updated 7.3 years ago by
Steve Lianoglou
★ 13k • written 7.3 years ago by
Harrisonesmith
• 0
4
votes
4
replies
2.4k
views
What doest this p.value distribution mean?
deseq2
pvalue
updated 7.7 years ago by
Michael Love
43k • written 7.7 years ago by
chipolino
• 0
1
vote
1
reply
1.7k
views
fdrtool corrected p-value histograms look weird
pvalue
adjusted pvalue
fdrtool
updated 8.0 years ago by
Michael Love
43k • written 8.0 years ago by
hele7
▴ 20
2
votes
2
replies
3.0k
views
How to control p-value inflation with limma
limma
pvalue
inflation
bacon
updated 8.9 years ago by
Aaron Lun
★ 29k • written 8.9 years ago by
stephane.cauchi
▴ 10
1
vote
1
reply
4.2k
views
Q value obtained from QValue package is lower than P value?
qvalue
pvalue
r
multiple comparisons
updated 9.1 years ago by
Storey, John D.
▴ 100 • written 9.1 years ago by
tombernardryan
▴ 60
0
votes
1
reply
1.7k
views
meta analysis of clc output(differential expression data )
rnaseq
metaseq
clc output
pvalue
meta analysis
updated 9.1 years ago by
Koki
▴ 10 • written 9.1 years ago by
hassangiahi
• 0
2
votes
10
replies
14k
views
adjusted p-values and p-values problems!
pvalue
adjusted pvalue
r
bonferroni
rna-seq
updated 9.4 years ago by
Michael Love
43k • written 9.4 years ago by
fromhj304
▴ 10
2
votes
4
replies
1.7k
views
ResrtingTools include pvalue NA
reportingtools
deseq2
NA
pvalue
updated 9.6 years ago by
Michael Love
43k • written 9.6 years ago by
NMostajo
▴ 10
0
votes
8
replies
2.4k
views
ReportingTools include pvalue NA and comparissons
R
reportingtools
deseq2
pvalue
coef
updated 9.7 years ago by
Michael Love
43k • written 9.7 years ago by
NMostajo
▴ 10
4
votes
1
reply
2.7k
views
Very low EdgeR Pvalues with very small sample size
edger
pvalue
sample size
updated 9.7 years ago by
Aaron Lun
★ 29k • written 9.7 years ago by
Venu Pullabhatla
▴ 40
6
votes
8
replies
7.9k
views
Does limma calculate pvalues using log2 fold changes or with linear values?
limma
pvalue
log2fc
log2
updated 3.2 years ago by
James W. MacDonald
68k • written 9.9 years ago by
serpalma.v
▴ 60
7
votes
11
replies
5.1k
views
t-statistic cutoff for finding DMRs with bsseq
bsseq
dmr
ttest
pvalue
updated 10.0 years ago by
James W. MacDonald
68k • written 10.0 years ago by
enricoferrero
▴ 680
1
vote
2
replies
2.0k
views
Cannot re-create q-values from the p-values in the DiffTable.
cummeRbund
pvalue
adjusted pvalue
qvalue
updated 10.1 years ago by
James W. MacDonald
68k • written 10.1 years ago by
Sameet Mehta
▴ 30
0
votes
0
replies
1.4k
views
pvalRRHO() does not compute the p-value
RRHO
rank
pvalue
10.4 years ago
aurelien
▴ 10
1
vote
3
replies
2.3k
views
confusing output from EdgeR Glm
edger
logfc
pvalue
updated 10.4 years ago by
Aaron Lun
★ 29k • written 10.4 years ago by
amoltej
▴ 10
4
votes
5
replies
3.5k
views
Is it sensable to use p-value detection in illumina bead array as present, absent or marginal call
illumina
pvalue
updated 10.7 years ago by
svlachavas
▴ 840 • written 10.7 years ago by
Agaz Hussain Wani
▴ 260
27 results • Page
1 of 1
Recent ...
Replies
Answer: Bulk RNAseq analysis for
by
Gordon Smyth
53k
All three packages allow paired comparisons, where the clone is the "pair". limma moreover allows mixed models (just run `voomLmFit` with `…
Comment: Announcing a New Journal - Bioinformatics Methods and Applications - Now Open fo
by
a2a2haa
• 0
By promoting reproducible analysis, the scientific community can better understand the precise mechanisms that make [Hydrogen inhalation sa…
Answer: Bulk RNAseq analysis for
by
James W. MacDonald
68k
In my experience, the within-clone variability of differentiated stem cells is often as large or larger than the between-clone variability,…
Comment: Jobs at Ensembl
by
frostybuddyy
• 0
I found your blog "Jobs at Ensembl" quite fascinating! The way you talked about the convergence of bioinformatics and data science in emplo…
Comment: Postdoctoral Fellow (Computational Biology / Bioinformatics) - Neuroepigenetics
by
mudasarnaeem2020
• 0
Promoting UDISE+ Features on Social Media to Increase Awareness https://udisseplus.com/[enter link description here][1] [1]: https://ud…
Votes
Comment: Are transformed values from rlog /vst log2 normalized counts?
Are transformed values from rlog /vst log2 normalized counts?
Answer: Bulk RNAseq analysis for
Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
Awards
• All
Popular Question
to
Guido Hooiveld
★ 4.1k
Popular Question
to
shepherl
4.3k
Popular Question
to
Steve Lianoglou
★ 13k
Teacher
to
Michael Love
43k
Supporter
to
fl
▴ 20
Locations
• All
United States,
24 minutes ago
United States,
2 hours ago
The city by the bay,
2 hours ago
Melbourne, Australia,
3 hours ago
United States,
5 hours ago
Traffic: 1137 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6