Showing : wgcna • reset
0
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2
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202
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voom(calcNormFactors()) for normalization of RNAseq counts for WGCNA
Voom Limma WGCNA
6 weeks ago Gimena • 0
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2
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236
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WGCNA: analysis of complex trait associations with regressions
Regression WGCNA
6 weeks ago w.cookson • 0
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1
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177
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problem with ClusterRepro function
WGCNA
updated 8 weeks ago by 65k • written 8 weeks ago by • 0
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1
reply
306
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WGCNA | plotDendroAndColors ERROR
plotDendroAndColor WGCNA
updated 3 months ago by ★ 4.1k • written 3 months ago by • 0
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2
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553
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Trouble generating a dendrogram with colored gene modules using WGCNA for large RNA-seq experiment
WGCNA
written 5 months ago by • 0
4
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3
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1.0k
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WGCNA documentation not available
WGCNA
written 5 months ago by ▴ 10
1
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2
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692
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Different results from blockwiseModules and blockwiseConsensusModules individual TOM
RNASeqData WGCNA consensusnetworks
5 months ago • updated 4 months ago Levi • 0
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2
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318
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WGCNA less samples
RNA-Seq WGCNA Worms
5 months ago davca • 0
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1
reply
523
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WGCNA tutorial docs needed: Horvath Lab site down
WGCNA
updated 6 months ago by ★ 4.1k • written 6 months ago by • 0
1
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1
reply
421
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How do I select a subset of genes for functional enrichment(GO/KEGG) analysis from WGCNA results?
WGCNA
updated 6 months ago by ▴ 190 • written 6 months ago by ▴ 10
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1
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403
views
TOMsimilarityFromExpr the returned matrix has NaN values except for diagonal 1
TOMsimilarityFromExpr WGCNA
updated 8 months ago by ★ 4.1k • written 8 months ago by • 0
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1
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2.1k
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Is it proper to compare two WGCNA matrixes if they were raised to different power (soft threshold)?
Network cluster WGCNA RNASeq
updated 9 months ago by 65k • written 9 months ago by • 0
1
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1
reply
506
views
WGCNA Cluster batch effect
BatchEffect TCGA WGCNA
updated 10 months ago by ★ 4.1k • written 10 months ago by • 0
0
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1
reply
631
views
Hub genes selection in WGCNA
wgcna WGCNA hubgene
updated 10 months ago by ★ 4.1k • written 10 months ago by ▴ 20
2
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5
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1.2k
views
DESeq2 remove batch effect
BatchEffect RNASeqData WGCNA DESeq2
updated 28 days ago by • 0 • written 11 months ago by • 0
3
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6
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853
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Question on constructing design matrix and defining contrasts for analysis
wgcna DESeq2 edgeR limma design
updated 11 months ago by 50k • written 11 months ago by ▴ 10
1
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0
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485
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WGCNA of two different cohorts study
DifferentialExpression WGCNA
updated 11 months ago by 42k • written 11 months ago by ▴ 20
2
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1
reply
521
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WGCNA: many over and under-expressed features in modules of a signed network
WGCNA wgcna_package
updated 11 months ago by ▴ 50 • written 11 months ago by ▴ 10
0
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0
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433
views
blockwiseConsensusModules won't save individualTOM data?
blockwiseconsensusModules WGCNA consensus
11 months ago Levi • 0
3
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7
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1.2k
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"Degree values are the same for all nodes in a network imported from WGCNA to Cytoscape using RCy3. Seeking insights and potential causes."
Cytoscape RCy3 Networkvisualization WGCNA
12 months ago Ortega-C ▴ 10
0
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1
reply
528
views
WGCNA for one perturbation time series (pooled from two independent replicates)?
WGCNA
updated 12 months ago by ★ 4.1k • written 12 months ago by • 0
0
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0
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553
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Problems with the input (from TPM) - How to remove isoforms in WGCNA
Arabidopsis_thaliana removeisoforms WGCNA
12 months ago Ortega-C ▴ 10
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2
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615
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WGCNA problem
WGCNA
updated 12 months ago by ▴ 10 • written 13 months ago by • 0
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5
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1.7k
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blockwiseModule crashes in the end and doesn't generate modules
WGCNA
written 13 months ago by • 0
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0
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570
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WGCNA approach on multiregional brain transcriptomes
Neurotranscriptome RNAseq WGCNA
13 months ago Levi • 0
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0
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434
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Module Trait Corelation
WGCNA
13 months ago allanokwaro • 0
2
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3
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924
views
Batch correction and Deseq2
DESeq2 WGCNA Normalization NormalyzerDE BatchEffect
updated 13 months ago by ★ 4.1k • written 14 months ago by ▴ 20
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0
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450
views
How to draw module significance barplot?
module_significance barplot WGCNA
14 months ago Sooni ▴ 10
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0
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488
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Multiple way network preservation
wgcna
15 months ago madzayasodara • 0
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0
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540
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WGCNA TOM file empty
WGCNA TOM
15 months ago gianni.drm • 0
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0
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840
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WGCNA Heatmap and Export to Cytoscape Not Working
Cytoscape Heatmap heatmaps WGCNA
15 months ago gianni.drm • 0
0
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1
reply
895
views
WGCNA soft thresholding suggesting a power of 1
independence thresholding WGCNA connectivity scale
updated 10 weeks ago by ▴ 720 • written 15 months ago by • 0
0
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1
reply
533
views
In WGCNA which is the matrix on which the eigen decomposition is run to get the module eigen gene
WGCNA
updated 15 months ago by ▴ 50 • written 15 months ago by • 0
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0
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626
views
Does verboseScatterplot in WGCNA package allow for highlighting a subset of genes
WGCNA
15 months ago S • 0
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0
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614
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Problems running WGCNA
WGCNA
17 months ago S • 0
0
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0
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531
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coexpression networks
WGCNA igraph
17 months ago María José • 0
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0
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521
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A question about GWENA R/Bioconductor package
proteomics GWENA Proteomics WGCNA
17 months ago Abdullah • 0
0
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2
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935
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using WGCNA, positive or negative corrlation between genes composing modules.
correlation wgcna network
updated 8 hours ago by • 0 • written 17 months ago by • 0
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0
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780
views
WGCNA: minModuleSize is not responding correctly
wgcna Network WGCNA minModuleSize
18 months ago • updated 17 months ago bioinformaticssrm2011 • 0
2
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1
reply
808
views
WGCNA: weird issue of module with a single gene
network co-expression WGCNA
updated 20 months ago by ▴ 50 • written 20 months ago by ▴ 10
0
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1
reply
833
views
WGCNA - Network construction and module detection
gene Clustering wgcna flashclust
updated 20 months ago by ▴ 50 • written 20 months ago by ▴ 20
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0
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566
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MM-GS plot doesn't show any negative correlation
wgcna
21 months ago shubhankar.pawar • 0
0
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1
reply
970
views
WGCNA Export Eigengene Adjacency/Correlation values export
WGCNA
updated 22 months ago by • 0 • written 22 months ago by • 0
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0
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639
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ARACNe Sample Size
grndata GRN ARACNE WGCNA
22 months ago Harrsha • 0
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0
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525
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Enrichment in genomic regions
Enrichment clusterPro WGCNA
22 months ago María José • 0
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0
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616
views
How to create consensus network from SampledBlockwiseModules in WGCNA?
NetworkInference SampledBlockWiseModules WGCNA
22 months ago as8020 • 0
0
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0
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425
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WGCNA consensusMEDdissimilrity
WGCNA
2.0 years ago María José • 0
1
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3
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1.8k
views
WGCNA error
WGCNA
2.0 years ago ayabalbaa1990 • 0
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0
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771
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The gene clusters from the WGCNA dendrogram output are not in order
Clustering WGCNA
2.0 years ago chiwut.wong • 0
0
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0
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664
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FILTER GENES FOR WGCNA
WGCNA
2.0 years ago María José • 0
50 results • Page 1 of 1
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Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db") by Marcel Ramos 690
`BiocManager` does not install local packages. It only installs Bioconductor, CRAN, and GitHub ones. You should install local packages w…
Comment: error running enricher from clusterprofiler by Yael • 0
It worked!!! Thanks alot, i think something in the gene_list wasnt right... Thanks agian
Comment: Create protein sequences including variants from a VCF file by Yun • 0
This cannot work for a SNV file, since `injectSNPs` need a `SNPlocs` object
Comment: Can log2cpm be used for proteomics data normalization? by Daniel • 0
Thank you for the quick reply and I apologize for it being on the wrong thread but the "post tag" function wasn't working properly.
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db") by Patadù ▴ 10
I have arranged the code again following the other post and also the script you suggested. Now, I managed to install `org.Vdahliae.eg.db`. …
Votes
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Answer: Trim/Filter out-of-bounds GRanges
Comment: How to correctly adjust for gender in edgeR
Create protein sequences including variants from a VCF file
A: DEXSeq design formula
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