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Comment: DESeq2- Mysterious interaction suppresses DEGs
by
shaunpeterson
•
0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed.
![enter image de…
Comment: STRINGdb : error with string_db$plot_network()
by
damian.szk
▴
80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library.
However, I will look at why "HTTP" …
Comment: STRINGdb : error with string_db$plot_network()
by
ninidea
•
0
> Does the vignette produce the same error?
No.
Anyway, I finally solved the problem. I don't know why, but I removed: protocol='http' fr…
Comment: maSigPro genes from clusters
by
anne-laure
•
0
Hello
It is a litlle bit late but I do not get how to extract the genes from each cluster identified by
see.genes(sigs$sig.genes$Day4vs…
Comment: STRINGdb : error with string_db$plot_network()
by
damian.szk
▴
80
Your code seems ok.
Does the vignette produce the same error?
[link to STRINGdb R script vignette][1]
[1]: https://www.bioconductor.or…
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