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8
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1.8k
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updated 16 months ago by ★ 4.1k • written 16 months ago by • 0
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16 months ago Robert • 0
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DEG Analysis using Limma on DSP GeoMx Data: Handling Multiple ROIs per Core
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16 months ago Bioinformagician • 0
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17 months ago • updated 16 months ago alephreish • 0
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16 months ago Fiona • 0
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1.4k
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updated 16 months ago by ★ 4.1k • written 16 months ago by • 0
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683
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methylKit problem
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updated 16 months ago by ▴ 10 • written 16 months ago by • 0
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3
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Create merged ChIP heatmap across conditions
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updated 16 months ago by ★ 5.2k • written 16 months ago by • 0
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ASICS to process NMR spectra
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16 months ago KONG ZHI XIAN • 0
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MAST package: Most appropriate way to perform lrTest for effect of factor with multiple levels in pairwise manner?
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16 months ago Kelly • 0
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Limma comparing gene expression between base line and one treatment
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updated 16 months ago by 68k • written 16 months ago by • 0
0
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How to rank DEG for GSEA using DEseq2 result ?
DESeq2 limma GeneSetEnrichment
updated 16 months ago by ★ 5.0k • written 16 months ago by • 0
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Run DEXSeq successfully but got a result that padj==1 in all genes
DEXSeq
updated 16 months ago by ★ 5.0k • written 16 months ago by • 0
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Get_interactions is giving the combined score
STRINGdb
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Limma - 0 downreg and upreg values
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updated 16 months ago by 68k • written 16 months ago by • 0
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updated 16 months ago by 43k • written 16 months ago by • 0
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Error from runShinyMethyl() - is(object, "shinyMethylSet") is not TRUE
shinyMethyl
updated 16 months ago by 68k • written 16 months ago by • 0
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5
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ComplexHeatmap - alter legend position
ComplexHeatmap
17 months ago • updated 16 months ago Lucy ▴ 60
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LIMMA 2x2 Factorial Design with Paired Samples
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updated 16 months ago by 53k • written 16 months ago by • 0
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updated 16 months ago by 16k • written 16 months ago by • 0
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16 months ago cereyredondo • 0
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rain
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DESeq2: two conditions two genotypes
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17 months ago • updated 16 months ago Rocio • 0
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17 months ago • updated 16 months ago Lucy ▴ 60
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updated 16 months ago by ▴ 760 • written 16 months ago by • 0
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featureCounts from Rsubread
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updated 16 months ago by 53k • written 17 months ago by • 0
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17 months ago Maria Doyle ▴ 110
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Problem with spike-ins (ERCC) in DESeq2 analysis after doing RUVg!
SpikeIn RUVSeq DESeq2 RUV
updated 17 months ago by 43k • written 17 months ago by • 0
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updated 17 months ago by 21k • written 17 months ago by • 0
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lmer MAST DifferentialExpression
17 months ago nhaus ▴ 70
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17 months ago jcollier • 0
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ChAMP analysis Error: Meth Matrix and UnMeth Matrix seems not paried correctly AND incomplete final line
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606
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RUVg spike-in assumption global expression
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17 months ago Erdi ▴ 10
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Spam: Ground Handling Companies in Maldives
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17 months ago vvipflight01 0
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Fail to install hgu133plus2.db
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updated 17 months ago by 68k • written 17 months ago by • 0
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17 months ago Steven 0
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How to perform a methylation analyisis from beta values matrix and pd.csv
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17 months ago yemeijie123 • 0
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XCMS2 of orbitrap data
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updated 17 months ago by • 0 • written 8.9 years ago by ▴ 10
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17 months ago Maria Doyle ▴ 110
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unreal negative log2fc values
DESeq2 des
updated 17 months ago by 68k • written 17 months ago by • 0
46,689 results • Page 19 of 934
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Comment: GOseq Probability Weight Function bad fit by ejasge.r.m • 0
When performing GO analysis with GOseq, i s important to carefully check your input and assumptions, just like reviewing choices on the McD…
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The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
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It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …
Comment: problem reading bam files into nucleR by efoss ▴ 10
I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…
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Answered here: https://support.bioconductor.org/p/16318/
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Upcoming Ensembl API and data access changes - new blog post available
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