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98
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flowDensity on a flowset
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28 days ago fredrikwallberg • 0
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2
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How can I create a GO plot with ggpubr and clusterProfiler libraries (begginer)
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how to do Differential splicing from SGSeq analysis
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8 days ago • updated 3 days ago Sara • 0
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what is the sampleFiles
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15 days ago bocchemistry • 0
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Error retrieving ensembl gene id using biomaRt...
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featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_get_next_read_BIN: Assertion `l_name < 256' failed. Aborted (core dumpe…
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3 days ago Chris • 0
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1 day ago Chris • 0
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Why output of GSEA is not the same but inversed, when you have the same but inversed input data?
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27 days ago andromeda • 0
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1
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putting my own expression data in deseq2
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14 days ago sropri • 0
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I am trying to detect alternative splicing.
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4 hours ago arfranco ▴ 130
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updated 2 days ago by 65k • written 3 days ago by • 0
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1 day ago • updated 10 hours ago Ian D. ▴ 70
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29 days ago Marianna ▴ 20
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IgG control in RIP-seq with Deseq2
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updated 23 days ago by 41k • written 23 days ago by • 0
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15 days ago • updated 9 days ago hortense96 • 0
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updated 28 days ago by ▴ 170 • written 29 days ago by • 0
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89
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Why does GSEA on edgeR results for randomized samples give highly significant p-values?
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updated just now by 50k • written 6 hours ago by ▴ 10
206 results • Page 3 of 5
Recent ...
Replies
Comment: Deseq2 and Normalization of RNA sequencing data by kcarey • 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP by Gordon Smyth 50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Answer: Gene-by-sample covariates in limma by Gordon Smyth 50k
Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p- by Gordon Smyth 50k
You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …
Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k
In that case both time and treatment are identical things, so choose one and go with it.
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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