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pairedGSEA input files
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How to adjust for Cell Type Differences between groups in Pseudo-Bulk Differential Gene Expression analysis in scRNA-seq?
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6 months ago AL • 0
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6 months ago svlachavas ▴ 840
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Does anyone have the command to download all of the core_nt using blast_db_get()
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updated 6 months ago by 4.2k • written 6 months ago by ▴ 380
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Pathview visualisation not including positive log2 fold changes
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UniProt.ws query for single UniRef90 ID takes several minutes
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Unable to restore chromosome sequence lengths or other metadata in BSgenome.Mfascicularis.NCBI.6.0
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7 months ago Jessica • 0
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Comparing Mock vs Infected in WT and Knockout Cells
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In WGCNA, what networkType should be used in pickSoftThreshold for a Signed Nowick TomType
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Error: lexical error: invalid char in json text (alevin-seurat)
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updated 7 months ago by ★ 4.9k • written 7 months ago by • 0
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updated 7 months ago by 68k • written 7 months ago by • 0
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Methylation data - different probes are classified differently based on transcript? (Illumina methylation arrays, using minfi)
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7 months ago charlie.wright • 0
46,625 results • Page 7 of 933
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Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by Gordon Smyth 53k
Normalization or filtering are never done for subsets of samples in any limma or edgeR analysis. These things must always be done globally.
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The simpler way to do the first four comparisons is to make a new column in colData that is temp_pollution, and specify that column alone a…
Comment: How to construct a BSgenome object from a custom genome assembly using BSgenomeF by James W. MacDonald 68k
You are. The reason I pointed you to `forgeBSgenomeDataPkgFromTwobitFile` is because it's much simpler, doesn't require a seed file, and is…
Comment: How to construct a BSgenome object from a custom genome assembly using BSgenomeF by mat149 ▴ 80
I've tried the following, but I must be missing something: setwd("C:\\Users\\....\\wd\\dump\\seqs_srcdir") e122<-readDNA…
Comment: readBam vs read_bam_insert_metrics by rtrivedi1 ▴ 10
Thanks for the answer.
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Comment: How to construct a BSgenome object from a custom genome assembly using BSgenomeF
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
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