Bioconductor Forum

Thursday, September 04, 2003 11:5 AM To: bioconductor@stat.math.ethz.ch Subject: [BioC] Seeking collaboration for an opensource data analysisinterface project We are looking for people interested in an opensource...data analysis software that we would like to propose as a NEXT-Adventure project (we are from Univ. Milano Bicocca, Italy. Dep. of Computer Science and Dep. of Biotechnology and Bioe…

Microarray affy Microarray affy

updated 22.3 years ago • Park, Richard

div class="preformatted">Dear Colleagues, We will start soon a cancer bioinformatics project. The goal is to find sets of hundreds or (preferably) tens of genes, differentially expressed in various clinical situations...and cancer localizations (breast, prostate, bladder, ovarian, etc). We are looking for collaborators (various part time jobs) - skilled in Bioconductor, able to pre-process (n…

Microarray Clustering Cancer Ovarian Microarray Clustering Cancer Ovarian

updated 15.6 years ago • Alexandru Floares

You may have noticed in a recent round of updates to the support site, there is a new editor for posting. The default editor now uses markdown by default rather than being a plain text editor. You can still type...https://guides.github.com/features/mastering-markdown/). As this is an mardown plugin for the editor not all the markdown syntax is activated but the above references can serve as a…

support.bioconductor.org editor markdown updates Tutorial

updated 6.8 years ago • shepherl

<div class="preformatted">This is probably a good time to mention on the BioC mailing list that we have developed a GUI interface to the limma package using the R tktcl library and tktcl extensions. The GUI package package is publicly available from http://bioinf.wehi.edu.au/limmaGUI. The package currently takes users from data input through data analysis to differential expression with two…

Microarray GUI affy limma Microarray GUI affy limma

updated 22.3 years ago • Gordon Smyth

The Role of Physiotherapy in Sports Injury Recovery** Physiotherapy plays a pivotal role in the rehabilitation process after a sports injury. This section will highlight the fundamental principles of sports injury...be interwoven to illustrate the effectiveness of these techniques in real-life scenarios. **The Rehabilitation Process in Abbotsford** Navigating the road to recovery require…

therapist KCsmart clinic

updated 2.0 years ago • legendphysio

Bioconductor has published a project-wide code of conduct: http://bioconductor.org/about/code-of-conduct/. We invite all members of the community to familiarise...values - an open approach to science that promotes the sharing of ideas, code, and expertise - collaboration - diversity and inclusivity - kindness and a welcoming environment - community contributions - openness in.…

Coc code conduct Bioconductor News

updated 5.2 years ago • Laurent Gatto

the analyses of sequencing datasets. The appointee will work under the supervision of Dr Wei Shi and collaborate with Prof Axel Kallies’ group at the Peter Doherty Institute (University of Melbourne). Prof Kallies is a world...will work on methodology development for analyses of sequence data generated by next-generation and third-generation sequencers. He/she will also work on collaborative proj…

bioinformatician job postdoc Job

updated 8.2 years ago • Wei Shi

such as 3 replicates in the first week, 5 replicates in the second week, 4 replicates in the third week, and 5 replicates in the fourth week, without any experimental controls. How can I use masigpro to make an experimental...design. such ## make a single series edesign > Time <- rep(c(1,5,10,24), each = 3) > Replicates <- rep(c(1:4), each = 3) > Group &a…

tissueTreg

updated 2.8 years ago • guang-hui

See <http://www.jobs.cam.ac.uk/job/7372/> for full details SOUND is an international research project funded by the European Commission (EC) within its Horizon 2020 Research and Innovation programme "Personalizing...and Care". Its objective is to create the bioinformatic tools for statistically informed use of personal genomic and other \`omic data in medicine, including cancers a…

computational biology job liquid biopsy Job

updated 10.5 years ago • Andy Lynch

The [Walters lab][1] (University of Kansas) is seeking a collaborator with expertise in statistical analysis of RNA-seq expression data and Bioconductor package development...This collaborator, paid as a contractor, will play a lead role in implementing a Bioconductor package that applies mixed-effects...RNA-seq expression data, with the primary aim of analyzing sex chromosome dosage compensation…

RNASeq JobPosting

updated 2.8 years ago • Jamie Walters

Hi everyone, I am a postgraduate student and currently I am doing a project . So I required some time series microarray data for my study. Could anyone help me with some simulated or raw data. If

microarray

updated 8.9 years ago • greevaphilip7

<div class="preformatted"> Hi all, This is not a proper Bioconductor question, but I think this is a good forum to place my request. I am looking for a public/available dataset regarding to a Mutiple Series Time Course Microarray design, for which also Real Time -PCR data for a number of genes has been measured. Can anyone put...a good forum to place my request. I am looking for a public/…

Microarray Microarray

updated 18.6 years ago • Ana Conesa

in an opensource data analysis software that we would like to propose as a NEXT-Adventure project (we are from Univ. Milano Bicocca, Italy. Dep. of Computer Science and Dep. of Biotechnology and Bioengineering). Obviously

updated 22.3 years ago • Andrea Splendiani

Sorry for my late answer, I was finalizing the different frameworks and tools of the biocep project and they are now robust enough for production. The different APIs are finalized but the documentation is incomplete...on the fly for thin web clients - Use R from within a Workbench that includes an advanced script editor, a Spreadsheet View fully connected to R data and functions, an R Object Insp…

Infrastructure PROcess Infrastructure PROcess

updated 18.1 years ago • kchine@ebi.ac.uk

div class="preformatted">We now have have two mailing lists for the bioconductor project (which is ``in construction''). The bioconductor project has been `opened' by two nice guys from Harvard, Robert Gentleman...the heading Bioconductor : R-based software for bioinformatics I currently am just the person who helped setting up the mailing lists. There's currently a very innofficial w…

updated 24.1 years ago • Martin Maechler

potential applications, too. To exploit the whole potential of our methodologies, we are looking for collaborators, interested in results to be published in high-impact journals (Nature, Science, PLOS, etc.). We want our collaborators...complement our expertise in cancer biology and clinics, and data science programming (R, Python, etc.). Collaborators wanting us to extract knowledge from their …

cancer microarray mirna sequencing

updated 10.7 years ago • alexandru.floares

Research UK Cambridge Institute. The position is to support an exciting whole-genome sequencing project funded by the CRUK Oesophageal International Cancer Genome Consortium Study led by Professor Rebecca Fitzgerald...from the MRC Cancer Cell Unit, and is available for one year in the first instance. The aim of the project is to understand the genetic architecture, history and clinical relevance…

job sequencing methylation expression Job

updated 10.9 years ago • Andy Lynch

div class="preformatted">Dear BioC people, I am doing a project that needs a large Affymetrix time-series data. I know there are a lot of cDNA time-series data but haven't found an ideal...Affymetrix one. Could anyone show me where I can download a publicly available Affymetrix time-series data? Many thanks, Frank</div

updated 21.1 years ago • fenghai duan

the R script that I am running in batch mode. The first version, which lacks "robust=TRUE" as the third argument of estimateDisp, works perfectly well. The second version, which I am appending below and which has "robust...as the third argument of estimateDisp, fails with the following error message: ``` > geno_comp <- estimateDisp(geno_comp,geno_design...functional batch file…

edgeR

updated 4.4 years ago • Erich

throughput flow cytometry, mass-cytometry, and related technologies. The institute is launching a series of collaborations focused on understanding the behavior of the immune system in autoimmune diseases and cancer...as part of a team. Demonstrated ability to track and meet goals and milestones across multiple projects. Desirable General Abilities Excellent written and verbal c…

bioinformatics scientist python computational Job

updated 6.9 years ago • careers

flow cytometry, mass-cytometry, and related technologies. The institute is launching a series of collaborations focused on understanding the behavior of the immune system in autoimmune diseases and cancer...as part of a team. Demonstrated ability to track and meet goals and milestones across multiple projects. Desirable General Abilities Excellent written and verbal communicatio…

analyst bioinformatics Job

updated 6.9 years ago • careers

epigenomics, and high-dimensional mass & flow cytometry. The institute is launching a series of collaborations focused on understanding the behavior of the immune system in autoimmune diseases and cancer...as part of a team. Demonstrated ability to track and meet goals and milestones across multiple projects. Desirable General Abilities Excellent written and verbal commu…

biostatistics single-cell high throughput Job

updated 6.9 years ago • careers

epigenomics, and high-dimensional mass & flow cytometry. The institute is launching a series of collaborations focused on understanding the behavior of the immune system in autoimmune diseases and cancer...as part of a team. Demonstrated ability to track and meet goals and milestones across multiple projects. Desirable General Abilities Excellent written and verbal commu…

Biostatistics Job

updated 6.9 years ago • careers

gene expression data. - There are three groups (each representing a haplotype). - There are several persons in each group (3 persons in group 1, 5 persons in group 2, and 4 persons in group 3). - There are 4 biological replicates in each...person. The experimenter took a cell from a person and cultured it four times, in consideration of possible variation that...data. If there were no four replic…

updated 17.3 years ago • Seungwoo Hwang

refer to our [lab page](https://tengmx.github.io) for more information about our ongoing research projects . This position will have great opportunities to closely interact with our biological/clinical collaborators...in the highly collaborative research environment at Moffitt Cancer Center, Tampa, FL. **The Ideal Candidate:** * Highly motivated with strong...genomics. **Responsibilitie…

genomics bioinformatics data science cancer research tampa Job

updated 5.5 years ago • tengmx

<div class="preformatted">We are offering 2 positions for scientific programmers with a strong background in Bio- and Chemoinformatics, Data Mining, Toxicology and (Q)SAR modelling. The successful candidates will design, implement and test open source software for the EU projects Sens-it-iv (www.sens-it-iv.eu) and OpenTox (www.opentox.org) using Ruby (on rails) as the main scripting langua…

updated 5.0 years ago • Christoph Helma

informatics resources; test the clinical validity of those items with likely impact in the personal medicine clinical enterprise; and to execute high priority projects that translate key technologies into the...and Duties: As a member of LPM, the Fellow is expected to assume important roles in prioritized LPM projects including: work with LPM project leadership to identify and describe key pilot…

updated 16.5 years ago • CBMI LPMGEN1

Postdoctoral Position in Bioinformatics/Biostatistics The successful candidate will work on a joint collaborative project between BIA and the General Hospital of the University of Vienna with the title "Genomic approaches...Ingelheim Austria GmbH Human Resources, Ms Susanna Steirer Dr. Boehringer-Gasse 5-11 A-1121 Wien personal@boehringer-ingelheim.at <mailto:personal@boehringer- ingelheim.at…

Visualization Visualization

updated 21.4 years ago • christian.haslinger@vie.boehringer-inge…

bioconductor at="" stat.math.ethz.ch=""> >Subject: [BioC] clustering of microarray time-series data >Message-ID: ><aanlktim6kiep+heaxqwj27cl9a-vsoqmpladl_a87==l at="" mail.gmail.com=""> >Content-Type: text/plain...gt; >Dear All, > >I have a time series data from two different samples (treatment A and >treatment B) at 3 different tim…

Microarray Clustering limma maSigPro Microarray Clustering limma maSigPro

updated 15.2 years ago • Maciej Jończyk

A dynamic, molecular diagnostics company focused on cancer is looking for a highly qualified person to work on several challenging genomic projects underway. The projects involve analysis of large, complex multidimensional...biological datasets generated from genomic or metabolomic technologies through collaborations with multi-disciplinary teams. The successful candidate will join a highly mot…

miRNA Normalization Cancer miRNA Normalization Cancer

updated 16.0 years ago • Christos Hatzis

informatics resources; test the clinical validity of those items with likely impact in the personal medicine clinical enterprise; and to execute high priority projects that translate key technologies into the...member of the program, the Fellow is expected to assume important roles in the prioritized PM projects including: Work with PM project leadership to identify and describe key pilot project…

updated 17.4 years ago • Tonellato, Peter

Due to capacity restrictions, there are a limited number of in-person spots for Bioc2022 in Seattle. A lottery system will be in place for selecting in-person attendance from the pool of

Registration Bioc2022 Conference

updated 3.7 years ago • shepherl

The third Bioconductor Asia meeting ([https://www.abacbs.org/conference-workshops\#bioc2017-link](https://www.abacbs.org/conference...This one-day event aims to bring together researchers with an interest in the Bioconductor project to exchanging ideas and expertise. On the preceding day (Thursday 16th November) a series short Bioconductor tutorials

conference news News

updated 8.3 years ago • Matthew Ritchie

biologists, human immunologists, and clinician scientists who come together to perform team-based projects, with each postdoctoral researcher leading her or his own project. The position therefore offers a stimulating...and multi-disciplinary environment with numerous opportunities to collaborate with researchers without and outside of the CTCN, including established collaborations with the New Y…

JobPosting

updated 4.3 years ago • Hans-Ulrich Klein

field **GENERAL SUMMARY:** We are looking for a motivated scientist to join a fast-paced, collaborative, and multidisciplinary Bioinformatics team and contribute to our collaborative drug discovery projects...innovative computational approaches, data visualizations, in support to oncology multiomics projects **MISSIONS AND RESPONSIBILITIES:** - Supporting project teams in analysing l…

clinical R bioinformatics multiomics oncology

updated 3.7 years ago • vincent.piras

informatics resources; test the clinical validity of those items with likely impact in the personal medicine clinical enterprise; and to execute high priority projects that translate key technologies into the...and Duties: As a member of LPM, the Fellow is expected to assume important roles in prioritized LPM projects including: work with LPM project leadership to identify and describe key pilot…

updated 12.4 years ago • Doe, Aimee

biophysical collaboration for testing predictions programmed into the work plan. Algorithms to predict pH-dependent effects have...application to biological systems has been largely piecemeal, studying individual elements. This project seeks to apply prediction methods to detect pH-sensing across a range of biological processes, including virus...by high throughput datasets. Specific systems a…

CancerData StructuralGenomics VirusStability pH-dependence

updated 4.4 years ago • jim.warwicker

A friendly reminder about two opportunities: **BioC2024 In-Person Registration** The deadline to register for in-person attendance at BioC2024 in Grand Rapids, Michigan, is fast approaching...Don't miss your chance to join the conference and expand your expertise. I**n-person registration closes next Wednesday, July 10**. [Sign up here.][1] **Bioconductor Carpentries RNA-seq Workshop** …

BioC2024 Conference Bioconductor Community

updated 18 months ago • Maria Doyle

informatics resources; test the clinical validity of those items with likely impact in the personal medicine clinical enterprise; and to execute high priority projects that translate key technologies into the...nbsp; As a member of LPM, the Fellow is expected to assume important roles in prioritized LPM projects including: work with LPM project leadership to identify and describe key pilot projec…

genomes Job

updated 11.2 years ago • Doe, Aimee

<div class="preformatted">Hi, I hope credit crunch is not affecting you!! TeamInIndia.com is a team of young and energetic professionals based in India with experience of 4+ years in PHP, ASP.NET, Web Design and Internet Marketing. Our unique proposition is that we have a huge exposure of the UK market (in fact we have an office here in the UK) we understand what you want with an objecti…

Infrastructure Infrastructure

updated 17.4 years ago • Kat

workforce (e.g., 50 million publications, 4 million patents, 2 million grants) and analyzing the collaboration networks of scientists. There are opportunities to study a wide range of related topics, such as the role of...interdisciplinary teams, international collaborations, and diversity (e.g., gender, race) in science. The Postdoctoral Research Associate will gain experience writing...Both of …

Statistical Modeling Job

updated 10.7 years ago • Doe, Aimee

and the question is much more simple... Do anyone have some suggestion on a nice and well done text editor R-interfaced for windows ? I found something on CRAN but I have no clue... Thanks to all in advance... Giulio </div

pamr pamr

updated 20.3 years ago • Giulio Di Giovanni

and in building analysis pipelines for such data, as a service for the EMBL research community. The person may also participate in the scientific development of new approaches for large-scale data analysis. The successful...for next- generation sequencing. The work will be carried out in an international and highly collaborative environment at the cutting edge of science, with a primary focus on …

Sequencing Sequencing

updated 17.0 years ago • delhomme@embl.de

gt; Cc: Paul Shannon <pshannon at="" fhcrc.org=""> > Subject: [BioC] new: Mentored Projects at Bioconductor > > We wish to announce a new feature of Bioconductor: "Mentored Projects". > > The web page is &gt...gt; http://www.bioconductor.org/developers/mentored-projects > > with this overview: > > Developers new to Biocondu…

updated 13.3 years ago • Gordon Smyth

OSB Group - Affordable Housing Projects Gurugram][1] Ocean Seven Buildtech (OSB Group) a real estate company based in gurugram proving best affordable housing...projects in India The OSB Group is launching an upcoming affordable housing project under the Moderate Lodging Arrangement...of 2013. This project aims to provide affordable homes with modern internal and external amenities. The ho…

NewWave

updated 2.4 years ago • osbgroup.dm

in Mainz, Germany. The Bioinformatics Core Facility supports IMB researchers and external collaborators in the computational analysis of NGS and other “omics” data generated in the course of research projects. We...m/f/d) to join our Core Facility team and take part in the computational analysis of various projects related to biological ageing. **You will:** - Support biomedical scientists i…

bioinformatics JobPosting germany job

updated 5.0 years ago • sergisayolspuig

for its pioneering work in bone-marrow transplantation, the Center's four scientific divisions collaborate to form a unique environment for conducting basic and applied science. The Hutchinson Center, in collaboration...make a difference. Responsibilities We are seeking an experienced Programmer/Systems Analyst. The person will join the Cancer Prevention Program providing support for the data …

Cancer Cancer

updated 16.3 years ago • Duran, Alysha M

# Postdoctoral Position: Posttranscriptional gene regulation in T cells The __Molecular Immune Regulation__ group at the Department of Biomedicine of the University of Basel and Basel University Hospital in Switzerland is seeking a highly motivated postdoc to work at the intersection of immunology, computational biology and molecular biology. We have recently developed a CRISPR…

Basel switzerland RNAseq metabolomics Job

updated 7.7 years ago • Robert Ivanek

div class="preformatted">Is there a package capable of visualizing time series data a la Gene Spring? How about for normalizing replicate time series data points? -- Mike</div

updated 22.3 years ago • Mike Schaffer

<div class="preformatted">Computational and Statistical Aspects of Microarray Analysis (III) June 19-25 2005, Bressanone-Brixen, Italy This 5 days lecture series provides an introduction to genomic data and their interpretation. The main focus will be on microarray experiments, covering statistical topics such as preprocessing, normalization, quality assessment, gene identification, machin…

Microarray Proteomics Normalization Preprocessing Cancer Microarray Proteomics Cancer

updated 21.1 years ago • stefano iacus

bioinformatics, computational biology, or closely related area. Additionally, applicants should have collaborative research experience. Primary responsibilities include teaching and advising graduate students as well...independent methodological research. In addition, the successful applicant will be expected to collaborate with other VCU investigators in related fields in obtaining extramural g…

updated 19.7 years ago • Kellie J. Archer, Ph.D.

Data Analyst who will conduct analyses of genomics data from childhood cancers in close collaboration with molecular biologists, geneticists, pediatric oncologists and other bioinformaticians. Current projects...of the bioinformatics core facility you will:__ * Support CCRI scientists conducting genomics projects in all stages from the experimental  planning to data interpretation, vi…

bioinformatician job Job

updated 9.4 years ago • Max Kauer

to understanding gene expression patterns and gene regulatory mechanisms. The laboratory actively collaborates with biological scientists at the institute and elsewhere on problems relating to stem cells, cancer and...data from RNA-seq, ChIP-seq, Hi-C, DNA-seq and other technologies.  The appointee will work on collaborative projects as prioritised by the Laboratory Head and will have t…

australia wehi Job

updated 9.2 years ago • Gordon Smyth

of omics-wide incompatibilities using systems biology – a personalized medicine approach. (WWTF Project) The __Bioinformatics__ group in the Business Unit Molecular Diagnostics at the __Austrian Institute of Technology...data to yield an integrative map of factors leading to organ rejection. This work will be done in collaboration with the Medical University of Vienna (Prof. Rainer Oberbauer)…

bioinformatics protein variantannotation data integration Job

updated 9.1 years ago • stephan.pabinger

literature related to drug discovery projects • Collaborate closely and effectively with researchers across disciplines and serve as a resource for colleagues...department • Influence discovery decisions and contribute significantly to corporate goals and project milestones • Follow the industry’s best practices for ensuring analytical reproducibility • Conduct other duties...analysis • …

Bioinformatics drug-discovery RNA-seq CRISPR Job

updated 5.4 years ago • yzhang

and Cancer Genomics at the IMP in Vienna A postdoctoral position localized at the IMP in collaboration with Boehringer Ingelheim Oncology in Vienna is available immediately. Research: The person will work closely...at the IMP and Boehringer Ingelheim to implement analysis pipelines for next generation sequencing projects in the area of cancer genomics. In-house generated data as well as selecte…

Cancer Cancer

updated 16.5 years ago • Ido M. Tamir

<div class="preformatted">Computational and Statistical Aspects of Microarray Analysis (IV) June 18-23 2006, Bressanone-Brixen, Italy This 5 days lecture series provides an introduction to genomic data and their interpretation. The main focus will be on microarray experiments, covering statistical topics such as preprocessing, normalization, quality assessment, gene identification, machine…

Microarray Proteomics Normalization Preprocessing Cancer Microarray Proteomics Cancer

updated 19.9 years ago • stefano iacus

with expertise in machine learning and data integration to take a leading role in an exciting new project "Comprehensive characterisation of prostate cancer subtypes to inform precision medicine” funded by a Prostate...Cancer Research Centre grant. This project will expand on previous work where we used our existing machine learning approaches to identify novel prostate...improve our understandin…

prostate cancer machine learning data science genomics Job

updated 6.0 years ago • Daniel Brewer

In-person registration for #BioC2023 closes in just one week! Be sure to register before Wednesday 19th July! Registration for

Bioconductor BioC2023 Conference

updated 2.5 years ago • Maria Doyle

div class="preformatted">We wish to announce a new feature of Bioconductor: "Mentored Projects". The web page is http://www.bioconductor.org/developers/mentored-projects with this overview: Developers new to...Bioconductor may find mentored projects a useful way to apply, refine and extend their skills. Projects are identified by experienced Bioconductor developers...The projects invol…

updated 10.6 years ago • Paul Shannon