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0
votes
0
replies
6
views
Gene set enrichment analysis
clusterProfiler
GeneSetEnrichment
1 hour ago
aogunbaw
• 0
0
votes
0
replies
14
views
Batch effect correction: methylome data
sesame
BatchEffect
MethylationArray
4 hours ago
Seungmin
• 0
0
votes
0
replies
35
views
Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(paste("networks", net.suid, "tables", tbl, sep = "/"), : object 're…
RCy3
18 hours ago
Matthew Thornton
▴ 350
2
votes
7
replies
264
views
deseq2 results
DESeq2
DifferentialExpression
rnaseqGene
DifferentialRegulation
4 days ago • updated 1 day ago
sajadahmad41454
• 0
0
votes
0
replies
38
views
The 'Home' shows:An error has occurred. Check your logs or contact the app author for clarification.
Reports
1 day ago
315005358
• 0
0
votes
1
reply
69
views
error
Biobase
2 days ago
NATASHA
• 0
0
votes
0
replies
34
views
Recommendations on deploying cytoviewer shiny.appobj to shinyapps.io?
cytoviewer
ShinyApps
2 days ago
neilzhao
▴ 30
0
votes
1
reply
1.3k
views
DSS CpG coverage threshold
DSS
WGBS
coverage
updated 3 days ago by
j.gilbert
• 0 • written 6.6 years ago by
floriandeckert
▴ 30
0
votes
0
replies
41
views
Treeio as.treedata function seq lenght error
treeio
4 days ago
nromerov
• 0
0
votes
0
replies
57
views
need help with Diffbind multiple groups
DiffBind
ChIPSeqData
5 days ago
Dinesh
• 0
0
votes
0
replies
123
views
Empty table plot using plotGseaTable()
fgsea
10 days ago • updated 8 days ago
Chris
• 0
0
votes
0
replies
101
views
dba.plotProfile() plotting and interpretation
DiffBind
9 days ago
Henry
▴ 10
0
votes
0
replies
132
views
One error problem occurred caused by data type during using GDCprepare function of TCGAbiolinks to handle TCGAbiolinks BRCA data
GDCRNATools
TCGA
17 days ago • updated 9 days ago
glaciya2018
• 0
0
votes
0
replies
78
views
flowStats for CyTOF
flowStats
10 days ago
tholmes
• 0
0
votes
0
replies
74
views
DiffBind: no peaks in DBA object
DiffBind
macs2
chipseq
10 days ago
yvonneh
• 0
0
votes
0
replies
69
views
How to create consensus peak sets for each group to use in DiffBind?
DiffBind
10 days ago
Ian D.
▴ 70
0
votes
3
replies
182
views
Differences in differential analysis methods for RNA-Seq
DESeq2
StatisticalMethod
Proteomics
DifferentialExpression
RNASeq
updated 10 days ago by
ATpoint
★ 4.1k • written 10 days ago by
james.zhang20
• 0
0
votes
0
replies
84
views
Could we detect difference at pathway level but not significant different at gene level?
GSVA
13 days ago
Chris
• 0
0
votes
0
replies
94
views
how to do Differential splicing from SGSeq analysis
DEXSeq
SGSeq
18 days ago • updated 13 days ago
Sara
• 0
0
votes
2
replies
259
views
featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_get_next_read_BIN: Assertion `l_name < 256' failed. Aborted (core dumpe…
metaMSdata
19 days ago • updated 17 days ago
shuwangxinze1996
• 0
0
votes
8
replies
363
views
DESeq2 output used for PCA plot on R studio
DESeq2
RSTUDIO
PCAtools
updated 17 days ago by
swbarnes2
★ 1.4k • written 19 days ago by
Aaliya
• 0
2
votes
13
replies
452
views
Trying to use enrichGO
clusterProfiler
GenomicDistributionsData
KEGG
21 days ago • updated 17 days ago
fernanda.backsouza
▴ 10
0
votes
0
replies
92
views
Exon-exon Junction Analysis for Variable-length Exons
Rsubread
18 days ago
Dario Strbenac
★ 1.5k
1
vote
3
replies
876
views
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
clusterProfiler
RNASeq
updated 18 days ago by
Guangchuang Yu
★ 1.2k • written 14 months ago by
ruiqi.li
▴ 10
0
votes
0
replies
86
views
Unlocking Potential: NURS FPX Strategies and Insights
levi
NURSFPX
ragene20sttranscriptcluster.db
ssrch
21 days ago
vaxahey107
• 0
0
votes
0
replies
102
views
I am trying to detect alternative splicing.
ASpli
22 days ago
Sebashish
• 0
0
votes
4
replies
248
views
Differential peaks that were not identified in diffbind were identified in diseq2
DiffBind
DESeq2
ATACSeq
25 days ago • updated 22 days ago
lonn
• 0
0
votes
2
replies
267
views
Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
featureCounts
Rsubread
6 weeks ago • updated 23 days ago
isaac.vock
• 0
1
vote
2
replies
228
views
significant difference of p-values with dream() after updating VariancePartition
variancePartition
24 days ago • updated 23 days ago
Le
• 0
0
votes
3
replies
270
views
A ComBat-seq issue: the covariates are confounded
ComBat-seq
sva
updated 24 days ago by
W. Evan Johnson
▴ 850 • written 4 weeks ago by
schlumbohm
• 0
0
votes
0
replies
128
views
Warning while loading DEP package
DEP
updated 24 days ago by
shepherl
3.9k • written 24 days ago by
Namrata
• 0
1
vote
2
replies
168
views
Error in champ.load(): The following specified files do not exist
ChAMP
24 days ago
Sherin
• 0
0
votes
1
reply
104
views
Input Question for deseq.r
RSeqAn
updated 24 days ago by
ATpoint
★ 4.1k • written 24 days ago by
Nina
• 0
1
vote
7
replies
1.8k
views
Error using champ.import
ChAMP
EPICv2
updated 25 days ago by
shilpa
• 0 • written 10 months ago by
medha.suman
• 0
0
votes
0
replies
87
views
Enzyme Engineering
BioTIP
25 days ago
bocchemistry
• 0
0
votes
0
replies
97
views
Syntaxt Error in IsorcorrectoR package with Molecule Info File
Syntaxerror
IsoCorrectoR
26 days ago • updated 25 days ago
Maliha Tabassum
• 0
0
votes
1
reply
126
views
what is the sampleFiles
chipseq
updated 26 days ago by
James W. MacDonald
65k • written 26 days ago by
zhulin
• 0
2
votes
2
replies
175
views
[DiffBind] Obtaining normalization factors
DiffBind
4 weeks ago • updated 26 days ago
Henry
▴ 10
0
votes
0
replies
101
views
Diffbind Error in socketConnection
DiffBind
Errorinsocketconnection
SpikeIn
26 days ago
Virangika
• 0
0
votes
0
replies
77
views
[ChIPseeker] Unable to perform gene ontology analysis
ChIPseeker
27 days ago
Henry
▴ 10
0
votes
1
reply
138
views
Deseq2 Rlog transformation
DESeq2
updated 27 days ago by
ATpoint
★ 4.1k • written 28 days ago by
Sahar
• 0
0
votes
1
reply
169
views
compareCluster dotplot: how to modify the genesets order
DOSE
enrichplot
clusterProfiler
updated 28 days ago by
Guido Hooiveld
★ 3.9k • written 4 weeks ago by
Lucie
• 0
42 results • Page
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Comment: More regions in union when increasing DBA$config$mergeOverlap
by
Ziliang
• 0
I am so confused and frustrated learning to use this software. Isn't how you merge the peaksets one of the most important steps for the com…
Answer: SingleR Label.Ont
by
Denis
• 0
[Jackpot City Casino][1] is the perfect option when looking for an online casino in Canada for an exciting vacation and huge winnings that …
Comment: deseq2 results
by
sajadahmad41454
• 0
thank you so much and sorry for bothering you again and again, it is urgent because it is my project deadline. i have removed that sample a…
Comment: deseq2 results
by
swbarnes2
★ 1.4k
Ask the people who made the libraires if there was anything unusual in the QC of the outlier sample. Try to figure out what biologically …
Comment: Can't post a question containing code?
by
NATASHA
• 0
did you find a solution? I´m having the same problem
Votes
A: AIC-like measure for DESeq2
Comment: Extremely small p-values using Limma for proteomic data
Comment: Log-cpm values from limma
Comment: Log-cpm values from limma
Comment: deseq2 results
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