Showing : ATACseqQC • reset
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598
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Error with BSgenome, wanting to analyse non-model species with ATACseqQC
ATACseqQC
updated 20 months ago by 68k • written 20 months ago by • 0
0
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0
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565
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Issue with shiftGAlignmentsList() in ATACseqQC after updating
R ATACseqQC
20 months ago danalvoronov ▴ 10
0
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7
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1.7k
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ATACseqQC shiftGAlignmentsList() problem
ATACseqQC ATACSeq
updated 20 months ago by ▴ 10 • written 23 months ago by • 0
0
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1
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1.0k
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Error in ATACseqQC bamQC analysis
ATACSeq ATACseqQC
updated 2.8 years ago by ★ 1.3k • written 2.8 years ago by • 0
0
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0
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966
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[ATACseqQC] NA values in sigs makes heatmap not completed
ATACseqQC ATACSeq
3.6 years ago hyjforesight • 0
1
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7
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2.2k
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TSSEscore function in ATACseqQC package
ATACseqQC
3.8 years ago Liu Yu-Yu • 0
0
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3
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1.7k
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package for ATACseq data analysis
SequencingData ATACSeq ATACseqQC
updated 3.2 years ago by ★ 5.2k • written 4.1 years ago by ▴ 40
0
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0
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715
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ATACseqQC function fragSizeDist returns error
fragSizeDist ATACseqQC
4.2 years ago xuyao15927402897 • 0
0
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0
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805
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NAs in TSSE for certain windows
ATACseqQC
4.2 years ago red_bricks ▴ 60
0
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2
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2.3k
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*** caught segfault *** address 0xffffffff9a378e20, cause 'memory not mapped'
ATACseqQC
4.4 years ago Nolan • 0
0
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9
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5.5k
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No peak corresponding to the nucleosome-free regions is observed in Fragment size distribution of ATAC-seq
ATACseqQC Fragmentsizedistribution ATAC-seq
4.5 years ago Xiaojie Cheng • 0
1
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4
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1.7k
views
How to use a fimo BED output as GRanges object in factorFootprints from ATACseqQC
ATACseqQC
updated 5.2 years ago by ★ 4.3k • written 5.2 years ago by ▴ 10
0
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4
replies
2.9k
views
ATACseqQC R package for QC scores (TSS, FRIP, NFR, IDR)
ATACseqQC atacseq R
updated 5.2 years ago by ★ 1.3k • written 5.2 years ago by • 0
1
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2
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14k
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Interpreting TSS Enrichment Score Summary
atacseq atacseqqc tss enrichment
updated 5.2 years ago by ★ 1.3k • written 5.2 years ago by • 0
1
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4
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1.5k
views
Subsampling when adjusting the read start sites in the ATACseqQC guide
atacseqqc r
5.3 years ago Arpi Beshlikyan • 0
0
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5
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2.2k
views
ATACSeqQC - error when splitting files using mm10
atacseqqc atac-seq R bioconductor rsamtools
updated 5.5 years ago by ★ 4.0k • written 5.5 years ago by • 0
0
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5
replies
2.4k
views
ATACseqQC installation fails at shiny step
ATACseqQC
updated 6.2 years ago by 68k • written 6.2 years ago by • 0
0
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2
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1.4k
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factorFootprints, bindingSites and Profile.segmentation
ATACSeqQC factorFootprints
updated 6.3 years ago by ★ 4.3k • written 6.3 years ago by • 0
1
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2
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1.9k
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ATACseqQC function bamSplit returns error when input .bam is from mouse
ATACseqQC
6.3 years ago beiting ▴ 30
1
vote
11
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3.4k
views
ATAC-QC shiftGAlignmentsList function
ATAC-seq ATACseqQC
updated 6.3 years ago by ★ 4.3k • written 6.3 years ago by • 0
0
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7
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2.3k
views
ATACseqQC splitGAlignmentsByCut: strand values must be in '+' '-' '*'
ATACseqQC R
updated 6.3 years ago by ★ 4.3k • written 6.3 years ago by • 0
0
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1
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1.4k
views
ATAC-QC fragSizeDist function
ATAC-seq ATACseqQC
updated 6.3 years ago by ★ 4.3k • written 6.3 years ago by • 0
0
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7
replies
2.5k
views
ATACseqQC shiftGAlignmentsList leads to (all(elementNROWS)>3) is not TRUE error
ATACseqQC ATAC ATACseq software error Tutorial
updated 6.4 years ago by ★ 13k • written 6.4 years ago by • 0
0
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6
replies
2.7k
views
atacseqQC error while splittin the bamfile
ATACseqQC ATAC-seq error split bam file
updated 6.5 years ago by • 0 • written 6.5 years ago by ▴ 10
0
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0
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1.2k
views
Enough cell number or not based on library complexity evaluation by ATACseqQC?
ATACseqQC ATAC-Seq Library complexity estimateLibComplexity
6.6 years ago Gary ▴ 20
2
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5
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2.0k
views
The meaning of results produced by the bamQC function implemented in the ATACseqQC
ATACseqQC bamQC ATAC-Seq totalQNAMEs MAPQ
updated 6.7 years ago by ★ 4.3k • written 6.7 years ago by ▴ 20
11
votes
21
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7.1k
views
How about our ATAC-Seq data quality analyzed by ATACseqQC
ATACseqQC ATAC-Seq quality analysis fragment size distribution library complexity
updated 6.7 years ago by ★ 4.3k • written 6.7 years ago by ▴ 20
0
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3
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1.4k
views
Compare the DNA footprinting between different samples when using ATACseqQC
atacseqqc
updated 7.3 years ago by ★ 1.3k • written 7.3 years ago by ▴ 10
0
votes
9
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2.2k
views
use factorFootprints function in ATACseqQC to get DNA footprinting for certain gene region
ATACseqQC
updated 7.3 years ago by ★ 4.3k • written 7.3 years ago by ▴ 10
0
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1
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1.4k
views
ATACseqQC: a few questions
ATACseqQC
updated 7.4 years ago by ★ 4.3k • written 7.4 years ago by • 0
0
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1
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1.3k
views
ATACseqQC questions in R language
atacseqqc
updated 7.4 years ago by ★ 1.3k • written 7.4 years ago by • 0
0
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1
reply
2.2k
views
Issue installing packages ATACseqQC and GO.db
GO.db biocinstaller package installation atacseqqc
updated 7.6 years ago by ★ 1.3k • written 7.6 years ago by • 0
0
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7
replies
3.0k
views
ATACseqQC memory overflow issue
atac-seq software error atacseqqc
updated 7.7 years ago by • 0 • written 7.7 years ago by ▴ 10
0
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2
replies
1.4k
views
ATACseqQC needs too much memory
ATACseqQC
updated 7.9 years ago by ★ 4.3k • written 7.9 years ago by • 0
5
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9
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5.1k
views
mm10 phastCons data for use with ATACseqQC
ATACseqQC bsgenome phastcons rtracklayer
updated 8.5 years ago by ★ 1.3k • written 8.5 years ago by ▴ 10
35 results • Page 1 of 1
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Answer: Setting up a DESeq2 Design with Paired Data by Kevin Blighe ★ 4.0k
Hello, Your design formula looks mostly correct to me, but I believe that `vessel_n` should be `replicate` (or whatever unique identifie…
Comment: Failure to download resources (MeSHDb) from AnnotationHub by Steve Lianoglou ★ 13k
That fixed it, thanks Lori!
Comment: Suppress warning in RHDF5 write by nicolas.lhuillier • 0
Thanks a lot for the quick and effective reply. I had tried "suppressWarnings" but not "suppressMessages".
Answer: Suppress warning in RHDF5 write by James W. MacDonald 68k
``` > fun <- function() message("this is a message") > fun() this is a message > suppressMessages(fun()) > ```
Answer: Failure to download resources (MeSHDb) from AnnotationHub by shepherl 4.2k
apologies. These are contributed by someone outside the core team. On upload I did not realize they included the older Bioconductor storage…
Votes
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
Awards • All
Scholar to shepherl 4.2k
Scholar to James W. MacDonald 68k
Popular Question to Daniel Cameron ▴ 40
Popular Question to Peter Hickey ▴ 760
Popular Question to edward.esiribloom • 0
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