Showing : ATACseqQC • reset
1
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427
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Error with BSgenome, wanting to analyse non-model species with ATACseqQC
ATACseqQC
updated 12 months ago by 68k • written 12 months ago by • 0
0
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0
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374
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Issue with shiftGAlignmentsList() in ATACseqQC after updating
R ATACseqQC
12 months ago danalvoronov ▴ 10
0
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7
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1.3k
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ATACseqQC shiftGAlignmentsList() problem
ATACseqQC ATACSeq
updated 12 months ago by ▴ 10 • written 15 months ago by • 0
0
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1
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824
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Error in ATACseqQC bamQC analysis
ATACSeq ATACseqQC
updated 2.2 years ago by ★ 1.3k • written 2.2 years ago by • 0
0
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0
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822
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[ATACseqQC] NA values in sigs makes heatmap not completed
ATACseqQC ATACSeq
3.0 years ago hyjforesight • 0
1
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7
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1.8k
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TSSEscore function in ATACseqQC package
ATACseqQC
3.1 years ago Liu Yu-Yu • 0
0
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3
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1.5k
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package for ATACseq data analysis
SequencingData ATACSeq ATACseqQC
updated 2.5 years ago by ★ 5.2k • written 3.4 years ago by ▴ 40
0
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0
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596
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ATACseqQC function fragSizeDist returns error
fragSizeDist ATACseqQC
3.5 years ago xuyao15927402897 • 0
0
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0
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680
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NAs in TSSE for certain windows
ATACseqQC
3.5 years ago red_bricks ▴ 60
0
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2
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1.9k
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*** caught segfault *** address 0xffffffff9a378e20, cause 'memory not mapped'
ATACseqQC
3.7 years ago Nolan • 0
0
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9
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4.7k
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No peak corresponding to the nucleosome-free regions is observed in Fragment size distribution of ATAC-seq
ATACseqQC Fragmentsizedistribution ATAC-seq
3.9 years ago • updated 3.8 years ago Xiaojie Cheng • 0
1
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4
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1.4k
views
How to use a fimo BED output as GRanges object in factorFootprints from ATACseqQC
ATACseqQC
updated 4.5 years ago by ★ 4.3k • written 4.5 years ago by ▴ 10
0
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4
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2.5k
views
ATACseqQC R package for QC scores (TSS, FRIP, NFR, IDR)
ATACseqQC atacseq R
updated 4.5 years ago by ★ 1.3k • written 4.5 years ago by • 0
1
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2
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12k
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Interpreting TSS Enrichment Score Summary
atacseq atacseqqc tss enrichment
updated 4.6 years ago by ★ 1.3k • written 4.6 years ago by • 0
1
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4
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1.2k
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Subsampling when adjusting the read start sites in the ATACseqQC guide
atacseqqc r
4.6 years ago Arpi Beshlikyan • 0
0
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5
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1.8k
views
ATACSeqQC - error when splitting files using mm10
atacseqqc atac-seq R bioconductor rsamtools
updated 4.8 years ago by ★ 4.0k • written 4.8 years ago by • 0
0
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5
replies
2.1k
views
ATACseqQC installation fails at shiny step
ATACseqQC
updated 5.5 years ago by 68k • written 5.5 years ago by • 0
0
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2
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1.2k
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factorFootprints, bindingSites and Profile.segmentation
ATACSeqQC factorFootprints
updated 5.6 years ago by ★ 4.3k • written 5.6 years ago by • 0
1
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2
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1.8k
views
ATACseqQC function bamSplit returns error when input .bam is from mouse
ATACseqQC
5.6 years ago beiting ▴ 30
1
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11
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3.0k
views
ATAC-QC shiftGAlignmentsList function
ATAC-seq ATACseqQC
updated 5.6 years ago by ★ 4.3k • written 5.6 years ago by • 0
0
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7
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2.0k
views
ATACseqQC splitGAlignmentsByCut: strand values must be in '+' '-' '*'
ATACseqQC R
updated 5.6 years ago by ★ 4.3k • written 5.6 years ago by • 0
0
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1
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1.3k
views
ATAC-QC fragSizeDist function
ATAC-seq ATACseqQC
updated 5.6 years ago by ★ 4.3k • written 5.6 years ago by • 0
0
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7
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2.2k
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ATACseqQC shiftGAlignmentsList leads to (all(elementNROWS)>3) is not TRUE error
ATACseqQC ATAC ATACseq software error Tutorial
updated 5.7 years ago by ★ 13k • written 5.7 years ago by • 0
0
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6
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2.3k
views
atacseqQC error while splittin the bamfile
ATACseqQC ATAC-seq error split bam file
updated 5.8 years ago by • 0 • written 5.8 years ago by ▴ 10
0
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0
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986
views
Enough cell number or not based on library complexity evaluation by ATACseqQC?
ATACseqQC ATAC-Seq Library complexity estimateLibComplexity
6.0 years ago Gary ▴ 20
2
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5
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1.8k
views
The meaning of results produced by the bamQC function implemented in the ATACseqQC
ATACseqQC bamQC ATAC-Seq totalQNAMEs MAPQ
updated 6.0 years ago by ★ 4.3k • written 6.1 years ago by ▴ 20
11
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21
replies
6.2k
views
How about our ATAC-Seq data quality analyzed by ATACseqQC
ATACseqQC ATAC-Seq quality analysis fragment size distribution library complexity
updated 6.1 years ago by ★ 4.3k • written 6.1 years ago by ▴ 20
0
votes
3
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1.3k
views
Compare the DNA footprinting between different samples when using ATACseqQC
atacseqqc
updated 6.6 years ago by ★ 1.3k • written 6.6 years ago by ▴ 10
0
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9
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1.9k
views
use factorFootprints function in ATACseqQC to get DNA footprinting for certain gene region
ATACseqQC
updated 6.7 years ago by ★ 4.3k • written 6.7 years ago by ▴ 10
0
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1
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1.3k
views
ATACseqQC: a few questions
ATACseqQC
updated 6.7 years ago by ★ 4.3k • written 6.7 years ago by • 0
0
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1
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1.1k
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ATACseqQC questions in R language
atacseqqc
updated 6.8 years ago by ★ 1.3k • written 6.8 years ago by • 0
0
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1
reply
2.0k
views
Issue installing packages ATACseqQC and GO.db
GO.db biocinstaller package installation atacseqqc
updated 7.0 years ago by ★ 1.3k • written 7.0 years ago by • 0
0
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7
replies
2.7k
views
ATACseqQC memory overflow issue
atac-seq software error atacseqqc
updated 7.0 years ago by • 0 • written 7.1 years ago by ▴ 10
0
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2
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1.3k
views
ATACseqQC needs too much memory
ATACseqQC
updated 7.2 years ago by ★ 4.3k • written 7.3 years ago by • 0
5
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9
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4.6k
views
mm10 phastCons data for use with ATACseqQC
ATACseqQC bsgenome phastcons rtracklayer
updated 7.8 years ago by ★ 1.3k • written 7.8 years ago by ▴ 10
35 results • Page 1 of 1
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Comment: Using tximport for kallisto aligned recount2 data by ATpoint ★ 4.7k
recount 2 does not use kallisto, does it? And recount does offer genelevel counts, so what's the point?
Comment: Seeking Advice on HTA 2.0 Microarray Data Processing with Oligo Package by Yao Lipu • 0
Thank you for your help! Your explanation was very clear and really helped me solve my issue. I truly appreciate your time and effort!
Answer: Surprising behavior for DEXseq dispersion estimate plot? by Snow • 0
Interesting adaptation of DEXseq, Elijah! Seeing those dispersion estimates makes me think about optimizing slopes, just like in [Snow Ride…
Answer: library org.Hs.eg.db failing to install by James W. MacDonald 68k
It should just install. ``` > library(BiocManager) Bioconductor version 3.20 (BiocManager 1.30.25), R 4.4.1 (2024-06-14 ucrt) W…
Comment: Surprising behavior for DEXseq dispersion estimate plot? by Elijah • 0
Thank you so much for your quick reply! I was worried if some underlying technical artifact or unusual behavior would be causing the patter…
Votes
A: WGCNA sample size minimum: why?
WGCNA sample size minimum: why?
Answer: Surprising behavior for DEXseq dispersion estimate plot?
Answer: Surprising behavior for DEXseq dispersion estimate plot?
Answer: Surprising behavior for DEXseq dispersion estimate plot?
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