Showing : Affy • reset
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794
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ERROR; return code from pthread_create() is 22
affy
updated 8 months ago by 67k • written 8 months ago by • 0
1
vote
10
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1.1k
views
Obtaining pheno data from CEL files
GEO affy
10 months ago • updated 9 months ago Kurtis • 0
1
vote
2
replies
473
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Problem with maplot {affy} method when using rma {affy} method output as its input
maplot_function rma_function ExpressionSet MicroarrayData affy
10 months ago Mj.A. • 0
1
vote
3
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659
views
frma normalization
frmaTools affy
updated 11 months ago by 67k • written 11 months ago by • 0
0
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11
replies
2.5k
views
globaltest question
Pathways probe affy Pathways probe affy
written 18.4 years ago by ▴ 30
0
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5
replies
2.3k
views
Normalizing Affy Almac Xcel Array Data from CEL files
Annotation affy oligo ffpe Annotation affy oligo ffpe
written 11.1 years ago by ★ 13k
0
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6
replies
3.0k
views
Error when Installing BioConductor Package ('affy')
Bioconductor Install affy
updated 14 months ago by ★ 4.6k • written 2.2 years ago by • 0
0
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1
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912
views
affy package and SNP arrays
crlmm hapmapsnp6 genomewidesnp6Crlmm affy
updated 19 months ago by ★ 4.0k • written 19 months ago by 6.7k
2
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3
replies
1.3k
views
Using gcrma() and using the t-test to compare single genes of interest for disease vs healthy comparison?
gcrma CustomCDF Affyhgu133aExpr limma affy
updated 21 months ago by 67k • written 21 months ago by ▴ 10
0
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3
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2.7k
views
*** caught segfault *** , cause 'memory not mapped'
affycoretools FRMA affyio AffymetrixDataTestFiles affy
updated 22 months ago by 67k • written 22 months ago by • 0
0
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1
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1.5k
views
limma: decideTests
affy limma affy limma
updated 2.0 years ago by 52k • written 17.1 years ago by ▴ 270
3
votes
9
replies
2.9k
views
Installing 'affy' package on MacOS M2 chip
nlme affy preprocessCore
updated 2.3 years ago by 67k • written 2.3 years ago by • 0
1
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3
replies
1.5k
views
Microarray - Illumina Metadata
limma GEO MicroarrayData affy
updated 3.3 years ago by 67k • written 3.4 years ago by • 0
0
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0
replies
1.2k
views
Reading Affymetrix Axiom files
affy SNP axiom
3.7 years ago f.calboli • 0
1
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3
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1.2k
views
The eBayes function gives two p-values for each row
hgu133plus2.db limma DifferentialExpression affy
updated 3.7 years ago by 52k • written 3.7 years ago by • 0
2
votes
2
replies
1.2k
views
Subscript out of bounds while normalising using affy::rma()
Normalization affy AffymetrixChip
3.7 years ago geoffrey ▴ 10
0
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1
reply
1.6k
views
filtering on variance
probe affy probe affy
updated 3.8 years ago by 52k • written 17.1 years ago by ▴ 90
0
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1
reply
2.7k
views
How to plot the RMA log2 normalised data from Affymetrix
log2 RMA Affymetrix affy Normalization
updated 3.9 years ago by ★ 4.0k • written 3.9 years ago by • 0
1
vote
2
replies
1.4k
views
Getting error in collapsing the affy probs
affy eset
updated 4.0 years ago by 67k • written 4.0 years ago by ▴ 30
0
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3
replies
1.7k
views
ReadAffy does not take into account parameter sampleNames with phenoData object
affycoretools ReadAffy Biobase phenoData affy
updated 4.1 years ago by 67k • written 4.1 years ago by • 0
5
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8
replies
3.0k
views
how to annotate arrays
affy annotation microarray oligo
updated 4.2 years ago by 67k • written 9.5 years ago by • 0
1
vote
3
replies
3.0k
views
Annotating [HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array [transcript (gene) version] file
microarray annotation affy
4.3 years ago kiera.lee ▴ 10
4
votes
7
replies
1.8k
views
Limma sample groups
microarray limma affy cancer
updated 4.3 years ago by 52k • written 4.3 years ago by • 0
0
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0
replies
893
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Probe Design questions
probe affy
4.4 years ago henry1995910343 • 0
0
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2
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1.3k
views
What is the best way to do annotation of the transcript clusters and filter in HTA 2.0
HTA2.0 microarray affy r
4.4 years ago Marco_aurelio • 0
0
votes
6
replies
1.4k
views
Problems loading latest Version of S4Vectors
affy
4.5 years ago ianrector97 • 0
5
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9
replies
4.3k
views
Pipeline to analyzing Microarray data set( GSE files from NCBI GEO)
microarray affy
updated 4.6 years ago by ★ 4.0k • written 4.6 years ago by ▴ 40
0
votes
2
replies
1.3k
views
How to process triplicate cel data?
microarray affy cel drugmatrix
updated 4.6 years ago by 52k • written 4.6 years ago by • 0
6
votes
3
replies
1.7k
views
GEOquery: preprocessing log of imported data
GEOquery microarray lumi affy limma
updated 4.6 years ago by 21k • written 4.6 years ago by ▴ 40
2
votes
7
replies
1.5k
views
Affycoretools package, HTA 2.0 annotation for non-coding RNA
affy rna hta2.0 r
updated 4.7 years ago by 67k • written 4.7 years ago by • 0
1
vote
1
reply
848
views
Microarray Workflow - NA error
limma affy
updated 4.8 years ago by ★ 4.0k • written 4.8 years ago by • 0
3
votes
4
replies
1.3k
views
gcrma problem with make.cdf.package
gcrma make.cdf.package affy
updated 4.8 years ago by 67k • written 4.8 years ago by ▴ 40
0
votes
1
reply
1.2k
views
Problem analyzing Affymetrix Microarray data from Clariom S Mouse
affy oligo Clariom S Mouse microarray
updated 4.8 years ago by 67k • written 4.8 years ago by • 0
0
votes
1
reply
786
views
Affymetrix microarray - Limma on timepoint experiment, how to make the design and contrast matrix ?
limma R microarray timepoint affy
updated 4.8 years ago by 4.1k • written 4.8 years ago by • 0
1
vote
1
reply
1.2k
views
Trouble using affy library
software error R microarray affy
updated 4.9 years ago by 67k • written 4.9 years ago by • 0
1
vote
1
reply
2.2k
views
How to annotate the Affymetrix data HTA-2.0 with oligo
annotation affy normalization
updated 5.0 years ago by ★ 4.1k • written 5.0 years ago by • 0
0
votes
2
replies
1.6k
views
3' microarray data using Affy - can't find cdf file, please help!
Affy microarray cdf
updated 5.1 years ago by 67k • written 5.1 years ago by • 0
0
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1
reply
1.1k
views
limma Multi-level Experiments - Main effect test
limma microarray affy
updated 5.2 years ago by 52k • written 5.2 years ago by • 0
0
votes
2
replies
1.3k
views
Ask for help on the preprocessing of GEO microarray data with Oligo and affy package
affy rma frma oligo
updated 5.2 years ago by 67k • written 5.2 years ago by • 0
3
votes
2
replies
1.1k
views
issue with hgu95acdf package
affy
updated 5.2 years ago by 25k • written 5.2 years ago by • 0
0
votes
1
reply
1.1k
views
Still Not Recognizing CDF
affy CDF
5.2 years ago ekl • 0
1
vote
5
replies
2.2k
views
CDf files in R
affy CDF
updated 5.2 years ago by 67k • written 5.2 years ago by • 0
1
vote
2
replies
1.3k
views
What should I do with the package:org.Hs.eg.db?
microarray affy
updated 5.3 years ago by 25k • written 5.3 years ago by ▴ 10
2
votes
4
replies
1.9k
views
Using function select
Affy
updated 5.3 years ago by 67k • written 5.3 years ago by • 0
3
votes
8
replies
3.2k
views
Error: 'exprs<-' is not an exported object from 'namespace:affy'
affy limma piano
updated 5.4 years ago by 67k • written 5.4 years ago by • 0
0
votes
0
replies
904
views
Different versions of r/affy combination may lead to differences in rma normalization results
microarray affy rma normalization affy package
5.5 years ago yshuang • 0
1
vote
2
replies
2.5k
views
CDF not found
Affy microarray
updated 5.5 years ago by ★ 4.1k • written 5.5 years ago by ▴ 10
0
votes
0
replies
922
views
Fold Change Calculation in edge package
edge microarray limma affy
5.6 years ago soumyab.g ▴ 10
6
votes
8
replies
2.1k
views
How to find out the genes that changes in expression by using gene level expression data matrix?
limma microarray affy edger
5.6 years ago Jurat Shahidin ▴ 80
1
vote
2
replies
1.0k
views
"hgu133plus2db" package not working in R
microarray affy annotation
updated 5.7 years ago by 67k • written 5.7 years ago by • 0
50 results • Page 1 of 1
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Answer: Restricting differential binding analysis to only TSS-proximal regions by Aaron Lun ★ 28k
Seems reasonable to filter out windows outside of the TSS if you don't care about those events. IIRC the `discard` option will ignore any f…
Comment: Sample-specific methylation values using QSEA by User3088 • 0
Thanks Simon. I got the sample-specific methylation values by using '**samples=getSampleNames**' ``` result=makeTable(qs=prad_QSEAset, glm=…
Comment: input for singR function by iamin053 • 0
Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!
Comment: build samplesheet and plot profile by yf • 0
![enter image description here][1] [1]: /media/images/8ea93bd0-bc90-443d-a332-4701f54a
Answer: I am having issues with bowtie2_build by James W. MacDonald 67k
Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…
Votes
Unused arguments error without used arguments in GSVA?
Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte
A: Doubt about the "zero expression" genes or genes with no reads at all in the co
Answer: Unable to install nloptr
Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?
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