Showing : Bioconductor • reset
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Tutorial: Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
bioconductor Install
7 days ago BioinfGuru ▴ 30
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73
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News: Important Release 3.18 Freeze Announcment
Release release Bioconductor Bioconducto
14 days ago shepherl 3.8k
0
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7
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353
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Internet connection for Bioconductor packages in Rstudio in Iran...
No_internet_connection_Packages Proxy Bioconductor GEOquery Internet_connection_problem
27 days ago • updated 24 days ago needNGS • 0
0
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2
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167
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bioconductor emailing list
Bioconductor
updated 4 weeks ago by 3.8k • written 4 weeks ago by • 0
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0
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132
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News: Deadline Extended - BioC2024 Abstracts and Sticker Contest - April 1st!
BioC2024 Conference Bioconductor
5 weeks ago Maria Doyle ▴ 70
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0
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119
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News: Nominations for Bioconductor Awards 2024!
Recognition Awards Bioconductor Bioc204
5 weeks ago shepherl 3.8k
1
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2
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243
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supportedOrganisms() in goseq producing Error in names(trackIds)
goseq Bioconductor rtracklayer
7 weeks ago thomas • 0
0
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0
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159
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News: BioC2024 registration is now open!
BioC2024 Conference Bioconductor Community
8 weeks ago Maria Doyle ▴ 70
1
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0
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261
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News: Nominations for Bioconductor Awards 2024!
Recognition Awards Bioconductor Bioc2024
9 weeks ago • updated 7 weeks ago shepherl 3.8k
0
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1
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288
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News: BioC2024 abstract submission is open!
BioC2024 Conference Bioconductor
updated 5 weeks ago by • 0 • written 9 weeks ago by ▴ 70
0
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0
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162
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News: EuroBioC2024 abstract submission is open!
Conference Bioconductor EuroBioC2024
10 weeks ago Maria Doyle ▴ 70
2
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0
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229
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News: Upholding our core values: a reminder of the Bioconductor Code of Conduct
Bioconductor
10 weeks ago Maria Doyle ▴ 70
0
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1
reply
217
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Bioconductor: Won't Update to 3.18 with Default Command
Bioconductor
updated 10 weeks ago by ▴ 730 • written 10 weeks ago by ▴ 30
1
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4
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413
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Can't post a question containing code?
Bioconductor
updated 10 weeks ago by ▴ 730 • written 11 weeks ago by ▴ 10
0
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1
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195
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Limitation on single file size and package size when developing Bioc package
packagedevelopment datalimit Bioconductor
updated 11 weeks ago by 16k • written 11 weeks ago by • 0
6
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11
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931
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Packages don't update, but no error or warning is thrown
Bioconductor
12 weeks ago • updated 10 weeks ago gernophil • 0
0
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0
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201
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News: Note about packages submitted for Bioconductor 3.19
Release Submission release Bioconductor
12 weeks ago shepherl 3.8k
2
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1
reply
272
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News: "Edit" button not working
Bioconductor Website SupportSite
updated 12 weeks ago by • 0 • written 3 months ago by 3.8k
2
votes
2
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297
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How to contact Bioconductor's test host?
Bioconductor
updated 3 months ago by 16k • written 3 months ago by ▴ 30
4
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3
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332
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Bioconductor code browser time out
Bioconductor
updated 3 months ago by ★ 6.5k • written 3 months ago by ▴ 30
0
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4
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704
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Bioconductor installation
Bioconductor
written 3 months ago by • 0
3
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1
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298
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News: Bioconductor.org has a new look!
Bioconductor Website
written 3 months ago by 3.8k
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260
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News: Online course - FLOW CYTOMETRY DATA ANALYSIS WITH R/BIOCONDUCTOR
Bioconductor FlowCytometryData FlowCytometry
4 months ago info ▴ 10
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0
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231
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Normalising processed Proteomics data in R
Bioconductor Proteomics
5 months ago Joshua • 0
2
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477
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News: Bioconductor's Transition Away from Twitter/X
Bioconductor
5 months ago Maria Doyle ▴ 70
0
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0
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279
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News: CRAN downtime
BiocManager Bioconductor
5 months ago shepherl 3.8k
2
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4
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595
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Import a Bioconductor package that is only used in a vignette/.Rmd script
Bioconductor PackageType BiocStyle
updated 5 months ago by 3.8k • written 5 months ago by • 0
0
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3
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539
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Support for installation and usage of TxDb.Hsapiens.UCSC.hg19.knownGene package in R version 4.2.2
Bioconductor BiocPkgTools
5 months ago blessybo • 0
0
votes
1
reply
333
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Advice needed on package using online databases (fails CHECK when database is down)
Bioconductor
updated 5 months ago by 3.8k • written 5 months ago by ▴ 30
5
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1
reply
425
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News: Bioconductor 3.18 is Released!
Packages Bioconductor Release Software
written 6 months ago by 3.8k
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0
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354
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News: COURSE - Developing R/Bioconductor Packages for Genomics
Bioconductor PackageTypeData PackageType
6 months ago info ▴ 10
2
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1
reply
839
views
limma::topTable with adjust.method=NULL is not BH corrected (manual is inconsistent with behavior?)
Bioconductor biocon limma
updated 6 months ago by 50k • written 6 months ago by • 0
2
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11
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916
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Error MakeOrgPackagefromNCBI
Bioconductor
updated 11 weeks ago by ★ 3.9k • written 6 months ago by • 0
5
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2
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732
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ComBat_seq function in sva package does not return a matrix
sva ComBat ComBat-seq Bioconductor ComBat_seq
7 months ago Federico ▴ 10
0
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2
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627
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For R version 4.0.2 and Biconductor version 3.11, clusterProfiler is not working
Bioconductor clusterProfiler
updated 7 months ago by 65k • written 7 months ago by • 0
0
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2
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1.1k
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Bioconductor version cannot be validated
Bioconductor
updated 5 months ago by • 0 • written 7 months ago by • 0
0
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1
reply
3.4k
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Bioconductor version cannot be validated
Bioconductor Annotation Ann
updated 7 months ago by 65k • written 7 months ago by • 0
0
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2
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911
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MACS2 not installing
Bioconductor
7 months ago alia.sinqua • 0
0
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0
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611
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NAs in tabular output from DNAcopy
Bioconductor DNAcopy
8 months ago NewtoBioconductor • 0
0
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2
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769
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Job: Bioinformatics Laboratory Head in AI or machine learning (WEHI, Australia)
bioconductor artificialintelligence JobPosting machinelearning
written 8 months ago by 50k
0
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1
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382
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Package "Netboost" is an Unix-only package, how can I install it in R?
Bioconductor netboost
updated 8 months ago by ★ 4.0k • written 8 months ago by • 0
1
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4
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740
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running Bioconductor Docker images only works with versions <= 3.15
Bioconductor
8 months ago patrick.turko • 0
1
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2
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651
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unable to retrieve certain packages from bioconductor 3.15
Bioconductor biocondu
updated 8 months ago by 65k • written 8 months ago by ▴ 10
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0
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440
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News: Bioconductor.org website new design - We Need Your Input!
Bioconductor Community Website
8 months ago Maria Doyle ▴ 70
0
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2
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2.4k
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vmatchPattern on DNAstring set
Bioconductor
9 months ago Avner • 0
0
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1
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464
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Read methylation data from tar files on GEO (GSE73303)
GeneExpression Bioconductor GEOquery MethylationArrayData
9 months ago Arianna • 0
0
votes
1
reply
596
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bioconductor - rhdf5 is not avbauloable for bioconductor version "3.14"
Bioconductor Install
updated 9 months ago by ★ 6.5k • written 9 months ago by • 0
3
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5
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1.1k
views
why is downloading the .tar.gz file for a given bioconductor package, then installing with R CMD INSTALL so much more effective than BiocManager::ins…
Bioconductor Install library biocmanager
updated 9 months ago by 6.7k • written 9 months ago by ▴ 20
0
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0
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436
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News: Reminder: BioC2023 in-person registration closes 19th July!
Bioconductor BioC2023 Conference
9 months ago Maria Doyle ▴ 70
0
votes
0
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525
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News: Course - Network Analysis in Systems Biology with R/Bioconductor
Bioconductor Network RNASeqData SystemsBiology
9 months ago info ▴ 10
50 results • Page 1 of 1
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Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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