Showing : CAMERA • reset
3
votes
4
replies
633
views
using limma trend workflow in CAMERA
CAMERA limma
4 months ago Jay • 0
3
votes
3
replies
586
views
One-sided tests with CAMERA-PR
CAMERA limma
updated 4 months ago by 52k • written 4 months ago by ▴ 10
4
votes
5
replies
1.1k
views
Method to find pathways different between 2 groups
fgsea GSVA CAMERA
7 months ago Chris ▴ 20
3
votes
4
replies
603
views
Help with error using camera() in limma
CAMERA limma
8 months ago Chris ▴ 20
1
vote
3
replies
851
views
CAMERA + Gene Ontology Gene Sets
GO limma CAMERA
updated 10 months ago by 52k • written 10 months ago by ▴ 10
1
vote
3
replies
992
views
Can CAMERA analyze just one particular pathway
pathway ORA limma CAMERA DGE
updated 16 months ago by 52k • written 16 months ago by • 0
0
votes
3
replies
832
views
Battery gene sets for CAMERA limma
CAMERA
updated 22 months ago by 67k • written 22 months ago by • 0
2
votes
2
replies
978
views
how to make a group to apply the data to CAMERA
CAMERA
2.6 years ago Akira • 0
4
votes
9
replies
2.3k
views
HELP! Troubleshooting Installing EBImage Package
Install CAMERA insta PackageType
updated 4.1 years ago by ▴ 750 • written 4.1 years ago by • 0
0
votes
0
replies
763
views
Interpretation of mroast p-value results for gene set testing of specific molecular signatures using microarray data
mroast camera gene set testing
4.2 years ago svlachavas ▴ 840
4
votes
11
replies
2.6k
views
Dealing with duplicated genes in camera gene set testing
limma camera gene set testing ensembl
updated 5.0 years ago by ★ 3.4k • written 5.0 years ago by ▴ 10
0
votes
2
replies
1.8k
views
Removing redundancy in Reactome pathways after performing gene set analysis with camera
camera limma gene set analysis gene set enrichment
updated 6.2 years ago by 52k • written 6.2 years ago by • 0
10
votes
2
replies
3.2k
views
How barcode-plot enrichment is calculated?
limma barcodeplot camera
updated 6.3 years ago by 52k • written 6.3 years ago by • 0
7
votes
2
replies
1.7k
views
Pre-ranked camera gene set testing with edgeR results
limma camera cameraPR edgeR gene set testing
updated 6.3 years ago by 52k • written 6.3 years ago by ▴ 60
0
votes
0
replies
1.3k
views
CAMERA error - isotopeProportionFits
camera metabolomics
7.0 years ago bhgyu ▴ 30
1
vote
2
replies
1.7k
views
Package won't recognise raw data files
camera metabolomics r
7.1 years ago bhgyu ▴ 30
0
votes
1
reply
1.6k
views
limma: Camera() about the input data
limma camera
updated 7.3 years ago by 52k • written 7.3 years ago by • 0
3
votes
1
reply
1.3k
views
No gene hits in cameraPR - due to bug dropping statistic names?
limma camera
updated 7.3 years ago by 52k • written 7.3 years ago by ▴ 40
0
votes
1
reply
1.4k
views
LIMMA Camera missing IDs.
limma camera
updated 7.4 years ago by 52k • written 7.4 years ago by • 0
0
votes
6
replies
2.1k
views
Different results obtained from mroast and camera from Deseq2 counts
limma camera mroast tximport
updated 7.5 years ago by 67k • written 7.5 years ago by ▴ 40
1
vote
0
replies
1.2k
views
Meta Analysis on CAMERA results
limma camera cohen d meta analysis
7.9 years ago Andy91 ▴ 60
0
votes
7
replies
2.8k
views
Camera gene set interpretation
limma camera gene set analysis gene set enrichment
updated 7.9 years ago by 52k • written 7.9 years ago by • 0
3
votes
2
replies
1.4k
views
how to deal with technical replicates in limma camera
limma camera
updated 8.1 years ago by 52k • written 8.1 years ago by ▴ 20
0
votes
2
replies
1.7k
views
using camera/roast/romer to find enriched gene sets from proteomics data
limma proteomics camera mroast romer
updated 8.2 years ago by 52k • written 8.2 years ago by • 0
0
votes
3
replies
2.2k
views
limma camera function Multiple contrasts
limma microarray contrast camera
updated 8.2 years ago by 52k • written 8.2 years ago by ▴ 20
1
vote
3
replies
2.2k
views
Is it possible to visualise the content of a xcmsSet object / the output of peak picking ?
metaMS xcmx CAMERA
updated 8.3 years ago by ▴ 20 • written 8.3 years ago by • 0
3
votes
7
replies
1.9k
views
major camera change from limma 3.22 to 3.28?
limma camera
updated 8.4 years ago by 52k • written 8.4 years ago by ▴ 10
3
votes
4
replies
1.8k
views
Competitive gene set testing between two sets of genes
gene set testing camera edger
updated 8.5 years ago by 52k • written 8.5 years ago by ▴ 20
2
votes
4
replies
2.0k
views
Getting gene ID's from camera results
limma camera
updated 8.6 years ago by ▴ 150 • written 8.6 years ago by ▴ 110
1
vote
5
replies
2.3k
views
Confused by results from CAMERA gene set testing
limma camera gene set testing
8.7 years ago claire.n.levy ▴ 10
2
votes
4
replies
3.3k
views
Arguments for camera (gene set analysis)
camera GSEA
updated 8.8 years ago by ★ 13k • written 8.8 years ago by ▴ 10
3
votes
4
replies
2.2k
views
Random effects with limma's camera()
limma camera duplicatecorrelation
updated 8.9 years ago by 52k • written 8.9 years ago by ▴ 30
8
votes
4
replies
6.3k
views
Differences between edgeR's and limma+voom's implementation of camera/roast/romer
limma edger mroast romer camera
updated 8.9 years ago by ★ 13k • written 8.9 years ago by ▴ 180
0
votes
1
reply
1.3k
views
romer implementation in edgeR
edgeR CAMERA edgeR CAMERA
updated 8.9 years ago by 52k • written 11.5 years ago by ▴ 110
4
votes
12
replies
2.8k
views
Limma Camera error
limma camera
9.2 years ago ea1402 ▴ 20
5
votes
2
replies
2.4k
views
Using limma::roast/camera/romer etc from DESeq2
deseq2 edger limma romer camera
updated 9.4 years ago by 52k • written 9.4 years ago by ▴ 150
10
votes
9
replies
7.1k
views
CAMERA error: $ operator not defined for this S4 class
software error CAMERA
updated 9.5 years ago by ▴ 20 • written 9.5 years ago by ▴ 60
8
votes
4
replies
2.0k
views
NaN results on some pathways in CAMERA
camera edger pathway analysis
updated 9.5 years ago by 52k • written 9.5 years ago by ★ 7.9k
3
votes
4
replies
5.5k
views
Gene set analysis with CAMERA
limma gene set analysis camera
updated 9.7 years ago by 52k • written 10.2 years ago by • 0
0
votes
1
reply
2.8k
views
CAMERA limma package. Gene set analysis.
limma camera
updated 9.7 years ago by 52k • written 9.7 years ago by • 0
0
votes
2
replies
1.5k
views
Using camera on a filtered expression matrix
camera limma gene set analysis
updated 9.9 years ago by 52k • written 9.9 years ago by • 0
0
votes
3
replies
1.6k
views
CAMERA on Mac OS X 10.9 (Mavericks)
CAMERA CAMERA
updated 10.4 years ago by ★ 13k • written 10.4 years ago by ★ 13k
0
votes
0
replies
2.1k
views
IdeogramTrack and bigWig file errors in Gviz
GO Network rtracklayer CAMERA Gviz GO Network rtracklayer CAMERA Gviz
10.7 years ago Robert Ivanek ▴ 750
0
votes
0
replies
1.3k
views
CAMERA output to Neutral Monoisotopic Mass
convert CAMERA convert CAMERA
11.0 years ago Charles Determan Jr ▴ 140
0
votes
0
replies
1.5k
views
enrichment packages that accept t-stat (or related stat) as input
Microarray limma Category CAMERA GSVA Microarray limma Category CAMERA GSVA
11.2 years ago Gordon Smyth 52k
0
votes
0
replies
1.3k
views
enrichment packages that accept t-stat (or related stat) as input
Microarray Proteomics limma Category CAMERA GSVA Microarray Proteomics limma Category
11.2 years ago Pekka Kohonen ▴ 190
0
votes
1
reply
1.7k
views
IdeogramTrack and bigWig file errors in Gviz
ChIPSeq GO Network rtracklayer CAMERA chipseq Gviz ChIPSeq GO Network rtracklayer Gviz
updated 11.2 years ago by ★ 11k • written 11.2 years ago by ▴ 40
0
votes
2
replies
2.1k
views
romer implementation in edgeR
limma edgeR CAMERA limma edgeR CAMERA
updated 11.5 years ago by 52k • written 11.5 years ago by ▴ 190
0
votes
2
replies
1.5k
views
IdeogramTrack and bigWig file errors in Gviz
Network rtracklayer CAMERA Gviz Network rtracklayer CAMERA Gviz
11.7 years ago Michael Lawrence ★ 11k
0
votes
6
replies
2.1k
views
IdeogramTrack and bigWig file errors in Gviz
ChIPSeq GO rtracklayer CAMERA chipseq Gviz ChIPSeq GO rtracklayer CAMERA chipseq Gviz
updated 11.7 years ago by ▴ 750 • written 11.7 years ago by ★ 13k
50 results • Page 1 of 1
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Answer: DESeq error: counts matrix should be numeric, currently it has mode: character by ATpoint ★ 4.6k
R thinks your data are characters (e.g. "1", "2", instead of 1, 2) so given that your `counts_data` indeed only contains counts, do: `mo…
Comment: Any tools to convert .gff to .gtf format by ControlF5 • 0
Yes, the Appsierra team recently built a tool to convert .gff to .gtf format. [ControlF5][1] is providing the best software testing service…
Comment: EuroBioC2024 abstract submission is open! by Alan Downey • 0
EuroBioC2024 has opened its abstract submission process, presenting an exciting opportunity for researchers to contribute to groundbreaking…
Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0
Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…
Answer: combining raw counts and estimated counts by O'Brien • 0
It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…
Votes
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
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