Bioconductor DMR

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4.2k

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bumphunter DMR DMR analysis minfi bioconductor

updated 7.3 years ago by rafa ▴ 60 • written 7.3 years ago by chelsey.ju • 0

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3.6k

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bsseq dmr ttest pvalue

updated 8.2 years ago by James W. MacDonald 65k • written 8.2 years ago by enricoferrero ▴ 660

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2.5k

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dmr methylation deseq2 bsseq biseq

updated 8.5 years ago by Kasper Daniel Hansen ★ 6.5k • written 8.5 years ago by enricoferrero ▴ 660

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1.8k

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dmr MethylationArrayData DMRcatedata

updated 3.5 years ago by James W. MacDonald 65k • written 3.5 years ago by Julie • 0

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1.7k

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methylation linear model dmr bsseq biseq

8.4 years ago enricoferrero ▴ 660

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1.6k

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ChAMP DMR champ.DMR

5.6 years ago yuabrahamliu • 0

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1.5k

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dmrcate dmr analysis dmr

updated 7.3 years ago by Tim Peters ▴ 170 • written 7.3 years ago by alexandria.andrayas ▴ 10

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1.5k

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dmrseq dmr dmrs bisulfite methylation

updated 6.2 years ago by keegan ▴ 60 • written 6.2 years ago by l.kremer • 0

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1.4k

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bumphunter DMR doparallel multicore

updated 9 months ago by Alessandro • 0 • written 6.0 years ago by arce.domingo.1407 • 0

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1.4k

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DMR Methylation R Gviz

updated 5 months ago by Robert Ivanek ▴ 730 • written 3.0 years ago by ltzhou • 0

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1.3k

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ChAMP minfi DMR dmr analysis lasso

8.6 years ago AST ▴ 60

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1.2k

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illumina methylationepic 450k limma minfi dmr analysis dmr

updated 7.1 years ago by Aaron Lun ★ 28k • written 7.1 years ago by Ellen O • 0

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1.2k

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BiSeq DMR

updated 3.9 years ago by James W. MacDonald 65k • written 3.9 years ago by akhaira • 0

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909

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bumphunter DMR methylation minfi

4.2 years ago i.s.brorson • 0

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852

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DMR bumphunter EPIC chip

4.2 years ago i.s.brorson • 0

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800

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ChAMP DMR

updated 3.9 years ago by Yuan Tian ▴ 280 • written 3.9 years ago by olive8306 • 0

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749

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Biseq Methylation DMP DMR RRBS

3.8 years ago i.s.castanho • 0

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727

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BiSeq testClusters error dmr

3.8 years ago akhaira • 0

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708

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methylsig no replicates dmr

5.8 years ago nilaycan • 0

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524

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edgeR DMR

updated 15 months ago by Michael Love 41k • written 15 months ago by Fiona • 0

20 results • Page 1 of 1

Recent ...

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Comment: log2FoldChange value is way too different when compared with counts(dds) by Michael Love 41k

But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…

Comment: log2FoldChange value is way too different when compared with counts(dds) by HAK • 0

Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…

Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call by ATpoint ★ 4.1k

Here the error probably means that you habe genes where expression scross all samples is the same. Rowscaling is value minus mean divided b…

Comment: Store output of matchPWM() by James W. MacDonald 65k

Here's a self contained reproducible example, using part of the example in `?matchPWM` ``` > library(Biostrings) > data(HNF4alpha) > libr…

Comment: DEseq2 coefficient by JKim • 0

Hi Dr. Love, I'm sorry to ask another question to my old post. If the design isn't balanced, the interpretation of coefficients will be…

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SPIA plotP giving error

Answer: Fold change calculation in Diffbind vs. DESEQ2?

C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB

C: Extremely big genes in annotation TxDb packages

Make custom Txdb class objects from Txdb

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