Bioconductor Data

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1.0k

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HELP Data

updated 3.2 years ago by Guido Hooiveld ★ 4.1k • written 3.2 years ago by mcclurejenniferc • 0

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849

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BAM Segmentation CINdex VCF Data

3.2 years ago raven1306 • 0

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3.3k

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ExpressionSet Assay NanoString Error Data

updated 3.3 years ago by James W. MacDonald 68k • written 3.3 years ago by junli1988 • 0

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911

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Cytometry R Data

3.3 years ago hamiltond ▴ 10

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1.4k

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data immunology software vaccinology

4.1 years ago Daniel • 0

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1.7k

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TCGAbiolinks data normalize l

updated 4.3 years ago by Kevin Blighe ★ 4.0k • written 4.3 years ago by DANIELA • 0

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2.6k

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data package submission BiocCheck

6.3 years ago j.flesch ▴ 10

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1.3k

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package data

7.2 years ago divyswar01 • 0

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933

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cellGrowth data

7.6 years ago • updated 7.5 years ago muitalegal888 • 0

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1.6k

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omiccircos bug hg19 hg18 data

8.5 years ago matthew.bashton • 0

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1.5k

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transform flow cytometry data

updated 8.8 years ago by SamGG ▴ 360 • written 8.8 years ago by cr • 0

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1.7k

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rna-seq data

updated 8.9 years ago by Gordon Smyth 53k • written 8.9 years ago by bioinformatics ▴ 30

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1.9k

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edger data analysis

10.3 years ago Pau Marc Muñoz Torres ▴ 20

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1.6k

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data

10.4 years ago Bogdan ▴ 670

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4.3k

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biseq fdr data results

10.6 years ago • updated 10.5 years ago mnaymik ▴ 10

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2.6k

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flowCore flowjo data

updated 10.9 years ago by Greg Finak ▴ 150 • written 11.0 years ago by AJC ▴ 10

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3.6k

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limma export log2 data agilent

updated 11.1 years ago by James W. MacDonald 68k • written 11.1 years ago by Jahn Davik ▴ 110

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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