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2
votes
15
replies
3.0k
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BiSeq trimClusters FDR.loc confusion
biseq
fdr
data
results
9.0 years ago • updated 8.9 years ago
mnaymik
▴ 10
2
votes
4
replies
1.4k
views
edgeR, data processing with some missed values
edger
data
analysis
8.8 years ago
Pau Marc Muñoz Torres
▴ 20
1
vote
2
replies
1.2k
views
about transforming a data.frame
data
8.9 years ago
Bogdan
▴ 670
0
votes
1
reply
1.1k
views
Transform data from MoFlo Astrios
transform
flow cytometry
data
updated 7.3 years ago by
SamGG
▴ 350 • written 7.3 years ago by
cr
• 0
2
votes
4
replies
3.0k
views
exporting limma log2 data
limma
export
log2
data
agilent
updated 9.5 years ago by
James W. MacDonald
65k • written 9.5 years ago by
Jahn Davik
▴ 110
1
vote
2
replies
2.0k
views
data() doesn't work for fcs files?
flowCore
flowjo
data
updated 9.4 years ago by
Greg Finak
▴ 150 • written 9.4 years ago by
AJC
▴ 10
0
votes
1
reply
1.2k
views
Drug datasets for RNA-seq
rna-seq
data
updated 7.3 years ago by
Gordon Smyth
50k • written 7.3 years ago by
bioinformatics
▴ 10
2
votes
1
reply
930
views
Curated Data Package in Bioconductor
package
data
5.7 years ago
divyswar01
• 0
0
votes
3
replies
2.1k
views
[ExpressionSet] Question: Error in validObject(.Object)
ExpressionSet
Assay
NanoString
Error
Data
updated 21 months ago by
James W. MacDonald
65k • written 21 months ago by
junli1988
• 0
0
votes
1
reply
1.1k
views
Help With TCGAbiolinks package
TCGAbiolinks
data
normalize
l
updated 2.7 years ago by
Kevin Blighe
★ 3.9k • written 2.7 years ago by
DANIELA
• 0
0
votes
1
reply
567
views
Data visualization
HELP
Data
updated 20 months ago by
Guido Hooiveld
★ 3.9k • written 20 months ago by
mcclurejenniferc
• 0
0
votes
0
replies
496
views
Prepare data frame of 3 column-lists or matrix of three-column lists from VCF or BAM files
BAM
Segmentation
CINdex
VCF
Data
20 months ago
raven1306
• 0
1
vote
0
replies
543
views
Mapping patient dataset onto control dataset
Cytometry
R
Data
22 months ago
hamiltond
▴ 10
0
votes
0
replies
1.3k
views
OmicCircos: included UCSC.hg19.chr dataframe is actually hg18 cytobands
omiccircos
bug
hg19
hg18
data
7.0 years ago
matthew.bashton
• 0
0
votes
0
replies
707
views
Data for cellGrowth package
cellGrowth
data
6.0 years ago
muitalegal888
• 0
0
votes
0
replies
847
views
Job:
Hiring Bioinformaticians, Data Engineers, & Computer Scientists @ Flagship Labs 77
data
immunology
software
vaccinology
2.6 years ago
Daniel
• 0
1
vote
2
replies
1.9k
views
Dealing With Package Sizes Greater than 5 MB
data
package submission
BiocCheck
4.7 years ago
j.flesch
▴ 10
17 results • Page
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Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks
by
ATpoint
★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Votes
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
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