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biseq fdr data results

9.1 years ago • updated 9.0 years ago mnaymik ▴ 10

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1.4k

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edger data analysis

8.8 years ago Pau Marc Muñoz Torres ▴ 20

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3.0k

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limma export log2 data agilent

updated 9.6 years ago by James W. MacDonald 65k • written 9.6 years ago by Jahn Davik ▴ 110

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ExpressionSet Assay NanoString Error Data

updated 21 months ago by James W. MacDonald 65k • written 21 months ago by junli1988 • 0

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data package submission BiocCheck

4.8 years ago j.flesch ▴ 10

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1.2k

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data

8.9 years ago Bogdan ▴ 670

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flowCore flowjo data

updated 9.4 years ago by Greg Finak ▴ 150 • written 9.5 years ago by AJC ▴ 10

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570

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HELP Data

updated 20 months ago by Guido Hooiveld ★ 3.9k • written 20 months ago by mcclurejenniferc • 0

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rna-seq data

updated 7.3 years ago by Gordon Smyth 50k • written 7.3 years ago by bioinformatics ▴ 10

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1.1k

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transform flow cytometry data

updated 7.3 years ago by SamGG ▴ 350 • written 7.3 years ago by cr • 0

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939

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package data

5.7 years ago divyswar01 • 0

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1.1k

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TCGAbiolinks data normalize l

updated 2.7 years ago by Kevin Blighe ★ 3.9k • written 2.7 years ago by DANIELA • 0

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548

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Cytometry R Data

22 months ago hamiltond ▴ 10

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853

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data immunology software vaccinology

2.6 years ago Daniel • 0

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omiccircos bug hg19 hg18 data

7.0 years ago matthew.bashton • 0

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499

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BAM Segmentation CINdex VCF Data

20 months ago raven1306 • 0

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709

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cellGrowth data

6.0 years ago muitalegal888 • 0

17 results • Page 1 of 1

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Comment: Differences in differential analysis methods for RNA-Seq by ATpoint ★ 4.1k

MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…

Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position) by Yveto • 0

Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…

Answer: More regions in union when increasing DBA$config$mergeOverlap by Rory Stark ★ 5.2k

I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …

Comment: log2FoldChange value is way too different when compared with counts(dds) by Michael Love 41k

But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…

Comment: log2FoldChange value is way too different when compared with counts(dds) by HAK • 0

Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…

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A: Error in DESeqDataSet : some values in assay are not integers

Bioconductor 3.19 is Released!

Answer: DEseq2 coefficient

SPIA plotP giving error

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