Showing : MicroarrayData • reset
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Ph.D. scholar
WGCNA DataNormalization MicroarrayData
updated 6 weeks ago by ★ 4.7k • written 6 weeks ago by • 0
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Consistent Decimals In Data After Antibody Array Background Correction Using Limma:nec Function
limma MicroarrayData Normalization
4 months ago Ai • 0
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2
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519
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Problem with maplot {affy} method when using rma {affy} method output as its input
maplot_function rma_function ExpressionSet MicroarrayData affy
11 months ago Mj.A. • 0
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7
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DEG Filtering
MicroarrayData limma Genefiltering
updated 11 months ago by 52k • written 11 months ago by • 0
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6
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1.2k
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limma: vooma mean-variance trend and data filtration
MicroarrayData limma
12 months ago • updated 11 months ago Lily Cheang ▴ 10
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925
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Is it possible to extract the expression of a single group without making comparisons?
MicroarrayData hta20transcriptcluster.db
updated 18 months ago by 52k • written 19 months ago by • 0
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Can the limma package be applied to Log2 RUV-normalized data?
RUVnormalizeData MicroarrayData limma
updated 15 months ago by • 0 • written 21 months ago by ▴ 10
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1.2k
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Error in getCdfInfo(object) :
MicroarrayData
23 months ago kobra • 0
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906
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Aligning Clariom D against reference Genome and transcriptome pipeline
Clariom Align MicroarrayData Alignment Microarray
2.0 years ago agamemnon • 0
2
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1
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805
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Doubts about manipulation and annotation of microarray files deposited at GEO
MicroarrayData Annotation GEOdata
updated 2.1 years ago by 68k • written 2.1 years ago by • 0
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Micro Array GEO data analysis
GEOquery MicroarrayData Normalization Microarray NanoStringDiff
updated 2.1 years ago by 68k • written 2.1 years ago by • 0
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1.4k
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Remove batch effect between microarray data
Microarray DifferentialExpression limma MicroarrayData removebatcheffect
2.2 years ago dqt • 0
2
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2
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798
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2-Way Repeated Measures ANOVA - Affymetrix
AffymetrixChip MicroarrayData Anova
2.4 years ago evan.j.williams ▴ 10
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3.3k
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Advice for the analysis of microarray data with limma
Microarray MicroarrayData limma
updated 2.1 years ago by 52k • written 2.4 years ago by • 0
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747
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Finding negative control in the array using R
R MicroarrayData
updated 2.5 years ago by 68k • written 2.5 years ago by • 0
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699
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Filtering single-channel Affymetrix probes
filtering probe MicroarrayData
2.6 years ago Fatemeh • 0
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2
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1.5k
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the difference between getGEO and getGEOSuppFiles
MicroarrayData
2.6 years ago Fatemeh • 0
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813
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IS DGE possible with normalized microarray expression data and Limma ?
limma MicroarrayData
updated 2.6 years ago by 68k • written 2.6 years ago by • 0
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975
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Compare different cell lines with tissues using limma
limma MicroarrayData Microarray Agilent
updated 2.7 years ago by 52k • written 2.7 years ago by • 0
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8
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1.9k
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Finding differentially expressed genes in a prospective cohort study
limma MicroarrayData Microarray
2.7 years ago YC • 0
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2
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1.1k
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Problem with results of Differential expression in Affymetrix microarray
limma MicroarrayData Microarray Affymetrix
2.8 years ago Mikołaj Mierzejewski • 0
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1.5k
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Affymetrix analysis of microarray by using Limma
limma MicroarrayData Microarray Affymetrix
2.8 years ago Mikołaj Mierzejewski • 0
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1.0k
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Identifying multiple mappings with pd.clariom.d.human
clariomdhumantranscriptcluster.db MicroarrayData Microarray pd.clariom.d.human
2.9 years ago • updated 2.8 years ago amir.rakhimov.b • 0
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How to extract probe level intensity after rma() normalization
MicroarrayData AffymetrixChip
updated 2.9 years ago by 68k • written 2.9 years ago by • 0
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4
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1.2k
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getProbeInfo and exprs return two different dimensions
CELfile MicroarrayData AffymetrixChip
3.0 years ago • updated 2.9 years ago Haoran • 0
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1.1k
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R CODE TO FIND AGGREGATE FOR DUPLICATES
aggregateBioVar DEGseq MicroarrayData
updated 3.3 years ago by 68k • written 3.3 years ago by • 0
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962
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Import and Analyze 4 GSE12050_GSM304448.gpr microarrays files
.gpr raw Agilent MicroarrayData import
updated 3.4 years ago by 52k • written 3.4 years ago by • 0
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3
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1.5k
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Microarray - Illumina Metadata
limma GEO MicroarrayData affy
updated 3.4 years ago by 68k • written 3.5 years ago by • 0
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2
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797
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Adj. P-value identical and high for all the genes
MicroarrayData
3.5 years ago Adriana • 0
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1.5k
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Extracting a list of genes from the Gene Expression Omnibus with Geoquery.
Microarray GEOquery cancerdata MicroarrayData
updated 3.5 years ago by 68k • written 3.5 years ago by ▴ 50
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5
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2.2k
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Use of arrayWeights with two treatment groups
Microarray arrays limma MicroarrayData
updated 3.7 years ago by 52k • written 3.8 years ago by • 0
1
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1
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1.9k
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How do I adjust for other factors in Limma differential expression analysis?
limma Microarray MicroarrayData arrays
updated 3.8 years ago by ★ 4.0k • written 3.8 years ago by • 0
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2
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How to exclude outlier (Microarray ) from PCA in R
OutlierD pcaMethods MicroarrayData Microarray
3.9 years ago waiyin0923 • 0
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2
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2.1k
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WGCNA - Outliers after creating sample tree
MicroarrayData WGCNA Microarray
4.1 years ago • updated 4.0 years ago jpwl2 • 0
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4
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1.6k
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Limma outputs different results for same sample?
topTable MicroarrayData ebayes limma Microarray
4.1 years ago snijesh ▴ 200
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9
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1.9k
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limma analysis when only Cy5 was used
MicroarrayData limma Microarray
4.1 years ago Daniel.Schnell • 0
36 results • Page 1 of 1
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Answer: Using tximport for kallisto aligned TOIL data by James W. MacDonald 68k
If you just have the transcript data, you probably don't need (and maybe cannot use) `tximport`. Instead you could just do the naive thing …
Answer: Reading gene expression data in GPR format and converting it to xlsx format by James W. MacDonald 68k
Setting aside the inadvisability of putting these data into Excel (and I should point out that these data are not single-cell, but instead …
Comment: concentration tables suitable as input for new packages? by wilkinson • 0
I am grateful for your response. Software such as "Spectra" may parse MS-data to generate tables of concentrations, for instance. But inste…
Comment: Removing UTR from GTF for gene quantification by ATpoint ★ 4.7k
Consider asking at biostars or bioinformatics reddit, since this is not directly related to a Bioconductor problem. Anyway, a couple of th…
Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Hoover • 0
I got it! ([Drift Boss][1]) [1]: https://driftbossgame.co
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Answer: Differential expression of proteins using somascan data
Answer: Surprising behavior for DEXseq dispersion estimate plot?
Answer: Handle zero effective gene length when tximport RSEM results
Handle zero effective gene length when tximport RSEM results
How to remove genes with 0 counts in tximport?
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