Showing : MicroarrayData • reset
0
votes
0
replies
468
views
Batch correction for microarray
BatchEffect sva MicroarrayData
9 months ago Shaimaa Gamal • 0
0
votes
1
reply
384
views
Ph.D. scholar
WGCNA DataNormalization MicroarrayData
updated 12 months ago by ★ 5.0k • written 12 months ago by • 0
1
vote
2
replies
1.5k
views
Consistent Decimals In Data After Antibody Array Background Correction Using Limma:nec Function
limma MicroarrayData Normalization
15 months ago Ai • 0
1
vote
2
replies
826
views
Problem with maplot {affy} method when using rma {affy} method output as its input
maplot_function rma_function ExpressionSet MicroarrayData affy
22 months ago Mj.A. ▴ 20
5
votes
7
replies
1.7k
views
DEG Filtering
MicroarrayData limma Genefiltering
updated 22 months ago by 53k • written 23 months ago by • 0
2
votes
6
replies
1.7k
views
limma: vooma mean-variance trend and data filtration
MicroarrayData limma
23 months ago • updated 22 months ago Lily Cheang ▴ 10
0
votes
3
replies
1.2k
views
Is it possible to extract the expression of a single group without making comparisons?
MicroarrayData hta20transcriptcluster.db
updated 2.5 years ago by 53k • written 2.5 years ago by • 0
5
votes
8
replies
3.3k
views
Can the limma package be applied to Log2 RUV-normalized data?
RUVnormalizeData MicroarrayData limma
updated 2.2 years ago by • 0 • written 2.7 years ago by ▴ 10
1
vote
2
replies
1.5k
views
Error in getCdfInfo(object) :
MicroarrayData
2.8 years ago kobra • 0
0
votes
0
replies
1.2k
views
Aligning Clariom D against reference Genome and transcriptome pipeline
Clariom Align MicroarrayData Alignment Microarray
3.0 years ago agamemnon • 0
2
votes
1
reply
1.1k
views
Doubts about manipulation and annotation of microarray files deposited at GEO
MicroarrayData Annotation GEOdata
updated 3.0 years ago by 68k • written 3.0 years ago by • 0
0
votes
1
reply
1.2k
views
Micro Array GEO data analysis
GEOquery MicroarrayData Normalization Microarray NanoStringDiff
updated 3.0 years ago by 68k • written 3.0 years ago by • 0
0
votes
2
replies
1.9k
views
Remove batch effect between microarray data
Microarray DifferentialExpression limma MicroarrayData removebatcheffect
3.1 years ago dqt • 0
2
votes
2
replies
1.1k
views
2-Way Repeated Measures ANOVA - Affymetrix
AffymetrixChip MicroarrayData Anova
3.3 years ago evan.j.williams ▴ 10
0
votes
17
replies
4.7k
views
Advice for the analysis of microarray data with limma
Microarray MicroarrayData limma
updated 3.0 years ago by 53k • written 3.3 years ago by • 0
0
votes
1
reply
905
views
Finding negative control in the array using R
R MicroarrayData
updated 3.4 years ago by 68k • written 3.4 years ago by • 0
0
votes
0
replies
855
views
Filtering single-channel Affymetrix probes
filtering probe MicroarrayData
3.5 years ago Fatemeh • 0
2
votes
2
replies
2.4k
views
the difference between getGEO and getGEOSuppFiles
MicroarrayData
3.5 years ago Fatemeh • 0
1
vote
1
reply
970
views
IS DGE possible with normalized microarray expression data and Limma ?
limma MicroarrayData
updated 3.5 years ago by 68k • written 3.5 years ago by • 0
0
votes
1
reply
1.3k
views
Compare different cell lines with tissues using limma
limma MicroarrayData Microarray Agilent
updated 3.6 years ago by 53k • written 3.6 years ago by • 0
0
votes
8
replies
2.3k
views
Finding differentially expressed genes in a prospective cohort study
limma MicroarrayData Microarray
3.6 years ago YC • 0
1
vote
2
replies
1.4k
views
Problem with results of Differential expression in Affymetrix microarray
limma MicroarrayData Microarray Affymetrix
3.7 years ago Mikołaj Mierzejewski • 0
1
vote
2
replies
2.0k
views
Affymetrix analysis of microarray by using Limma
limma MicroarrayData Microarray Affymetrix
3.7 years ago Mikołaj Mierzejewski • 0
0
votes
2
replies
1.3k
views
Identifying multiple mappings with pd.clariom.d.human
clariomdhumantranscriptcluster.db MicroarrayData Microarray pd.clariom.d.human
3.8 years ago amir.rakhimov.b • 0
0
votes
2
replies
1.2k
views
How to extract probe level intensity after rma() normalization
MicroarrayData AffymetrixChip
updated 3.8 years ago by 68k • written 3.8 years ago by • 0
0
votes
4
replies
1.5k
views
getProbeInfo and exprs return two different dimensions
CELfile MicroarrayData AffymetrixChip
3.9 years ago Haoran • 0
0
votes
1
reply
1.4k
views
R CODE TO FIND AGGREGATE FOR DUPLICATES
aggregateBioVar DEGseq MicroarrayData
updated 4.2 years ago by 68k • written 4.2 years ago by • 0
0
votes
1
reply
1.2k
views
Import and Analyze 4 GSE12050_GSM304448.gpr microarrays files
.gpr raw Agilent MicroarrayData import
updated 4.3 years ago by 53k • written 4.3 years ago by • 0
1
vote
3
replies
1.8k
views
Microarray - Illumina Metadata
limma GEO MicroarrayData affy
updated 4.4 years ago by 68k • written 4.4 years ago by • 0
0
votes
2
replies
977
views
Adj. P-value identical and high for all the genes
MicroarrayData
4.4 years ago Adriana • 0
1
vote
1
reply
1.9k
views
Extracting a list of genes from the Gene Expression Omnibus with Geoquery.
Microarray GEOquery cancerdata MicroarrayData
updated 4.4 years ago by 68k • written 4.4 years ago by ▴ 50
3
votes
5
replies
2.6k
views
Use of arrayWeights with two treatment groups
Microarray arrays limma MicroarrayData
updated 4.6 years ago by 53k • written 4.7 years ago by • 0
1
vote
1
reply
2.2k
views
How do I adjust for other factors in Limma differential expression analysis?
limma Microarray MicroarrayData arrays
updated 4.7 years ago by ★ 4.0k • written 4.7 years ago by • 0
0
votes
2
replies
2.9k
views
How to exclude outlier (Microarray ) from PCA in R
OutlierD pcaMethods MicroarrayData Microarray
4.8 years ago waiyin0923 • 0
0
votes
2
replies
2.5k
views
WGCNA - Outliers after creating sample tree
MicroarrayData WGCNA Microarray
5.0 years ago jpwl2 • 0
9
votes
4
replies
2.0k
views
Limma outputs different results for same sample?
topTable MicroarrayData ebayes limma Microarray
5.0 years ago snijesh ▴ 200
3
votes
9
replies
2.3k
views
limma analysis when only Cy5 was used
MicroarrayData limma Microarray
5.0 years ago Daniel.Schnell • 0
37 results • Page 1 of 1
Recent ...
Replies
Comment: soGGi error by shepherl 4.3k
We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…
Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k
No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.
Comment: Questions about bacon QC and correction on EWAS results by Tikaaa2sahaaaq2c • 0
In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …
Comment: using limma trend workflow in CAMERA by A.Barden ▴ 20
Do you need to set trend.var=TRUE when using camera in the limma-voom pipeline with RNA-Seq data (as apposed to limma-trend pipeline)?
Comment: Upcoming Ensembl API and data access changes - new blog post available by Tikaaa2sahaaaq2c • 0
Just as the Ensembl team transitions to a new platform for streamlined data access, diners can benefit from a digital newks menu prices con…
Votes
Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
C: Why limma, edgeR, and DESeq did not implement fold change moderation first?
Comment: using limma trend workflow in CAMERA
C: z-score with DESeq2?
Awards • All
Popular Question to shepherl 4.3k
Popular Question to Steve Lianoglou ★ 13k
Teacher to Michael Love 43k
Supporter to fl ▴ 20
Popular Question to James W. MacDonald 68k
Locations • All
United Kingdom, 29 minutes ago
United States, 42 minutes ago
United States, 3 hours ago
The city by the bay, 3 hours ago
Vietnam, 4 hours ago
Traffic: 1134 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6